Wall clock time and date at job start Mon Mar 8 2021 10:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86309 * 109.46903 * 2 1 4 4 C 1.50699 * 109.47514 * 240.00187 * 2 1 3 5 5 C 1.33390 * 125.20296 * 300.00254 * 4 2 1 6 6 C 1.38425 * 114.92123 * 179.97438 * 5 4 2 7 7 S 1.76201 * 122.53578 * 180.02562 * 6 5 4 8 8 O 1.42108 * 106.40064 * 203.53851 * 7 6 5 9 9 O 1.42097 * 106.40578 * 336.45842 * 7 6 5 10 10 N 1.65601 * 107.21828 * 90.00174 * 7 6 5 11 11 C 1.46503 * 120.00058 * 64.99563 * 10 7 6 12 12 H 1.09000 * 109.47044 * 335.00372 * 11 10 7 13 13 C 1.53000 * 109.46909 * 94.99986 * 11 10 7 14 14 C 1.52993 * 109.47095 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47345 * 300.00326 * 14 13 11 16 16 H 1.08997 * 109.46820 * 300.00011 * 15 14 13 17 17 N 1.46896 * 109.47028 * 179.97438 * 15 14 13 18 18 C 1.47020 * 110.99677 * 183.63630 * 17 15 14 19 19 C 1.53105 * 109.25762 * 177.60692 * 18 17 15 20 20 O 1.43013 * 109.25422 * 56.84561 * 19 18 17 21 21 C 1.43012 * 113.74324 * 301.32644 * 20 19 18 22 22 C 1.47010 * 111.00320 * 60.00132 * 17 15 14 23 23 C 1.53000 * 109.46920 * 59.99733 * 15 14 13 24 24 C 1.52996 * 109.46909 * 214.99928 * 11 10 7 25 25 C 1.33383 * 114.92174 * 359.97438 * 6 5 4 26 26 S 1.75887 * 109.59638 * 359.97438 * 25 6 5 27 27 H 0.96694 * 113.99875 * 60.00515 * 1 2 3 28 28 H 1.09004 * 109.47339 * 119.99911 * 2 1 3 29 29 H 1.48502 * 109.99843 * 60.00264 * 3 2 1 30 30 H 1.48499 * 109.99904 * 181.31974 * 3 2 1 31 31 H 1.07997 * 122.53530 * 0.23800 * 5 4 2 32 32 H 0.97002 * 119.99637 * 244.99717 * 10 7 6 33 33 H 1.08998 * 109.47229 * 300.00143 * 13 11 10 34 34 H 1.09010 * 109.46953 * 60.00137 * 13 11 10 35 35 H 1.08999 * 109.47544 * 180.02562 * 14 13 11 36 36 H 1.09006 * 109.47328 * 60.00026 * 14 13 11 37 37 H 1.08996 * 109.50541 * 297.53887 * 18 17 15 38 38 H 1.08998 * 109.50734 * 57.67192 * 18 17 15 39 39 H 1.09000 * 109.50425 * 296.90959 * 19 18 17 40 40 H 1.08995 * 109.50503 * 176.78002 * 19 18 17 41 41 H 1.08999 * 109.51013 * 298.74183 * 21 20 19 42 42 H 1.08999 * 109.54463 * 178.63254 * 21 20 19 43 43 H 1.08998 * 109.50691 * 302.32387 * 22 17 15 44 44 H 1.09000 * 109.50699 * 62.41054 * 22 17 15 45 45 H 1.08998 * 109.46859 * 180.02562 * 23 15 14 46 46 H 1.08997 * 109.47146 * 60.00479 * 23 15 14 47 47 H 1.09000 * 109.47630 * 300.00085 * 24 11 10 48 48 H 1.09002 * 109.46827 * 60.00499 * 24 11 10 49 49 H 1.08000 * 125.20529 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 1.6740 -1.9811 -1.5437 6 6 2.2441 -2.4171 -2.7274 7 16 2.0334 -4.0584 -3.3326 8 8 3.1359 -4.3137 -4.1921 9 8 1.7242 -4.8654 -2.2047 10 7 0.6833 -4.0578 -4.2915 11 6 0.6671 -3.2807 -5.5333 12 1 1.3802 -2.4598 -5.4575 13 6 1.0531 -4.1849 -6.7057 14 6 1.0356 -3.3735 -8.0027 15 6 -0.3683 -2.8106 -8.2333 16 1 -1.0811 -3.6318 -8.3088 17 7 -0.3849 -2.0311 -9.4783 18 6 -1.6971 -1.4024 -9.6888 19 6 -1.6520 -0.5539 -10.9624 20 8 -1.2633 -1.3781 -12.0647 21 6 0.0103 -2.0056 -11.8935 22 6 -0.0180 -2.8688 -10.6294 23 6 -0.7542 -1.9065 -7.0609 24 6 -0.7365 -2.7174 -5.7642 25 6 2.9640 -1.5002 -3.3756 26 16 2.9449 0.0101 -2.4744 27 1 -0.3933 0.4416 -0.7650 28 1 1.7924 -0.5138 0.8900 29 1 1.5614 2.4679 1.2085 30 1 3.5345 1.7704 -0.0321 31 1 1.0633 -2.6201 -0.9231 32 1 -0.0969 -4.5720 -4.0309 33 1 2.0530 -4.5862 -6.5412 34 1 0.3399 -5.0058 -6.7815 35 1 1.3101 -4.0177 -8.8380 36 1 1.7484 -2.5523 -7.9272 37 1 -2.4584 -2.1753 -9.7932 38 1 -1.9371 -0.7669 -8.8364 39 1 -0.9286 0.2518 -10.8375 40 1 -2.6385 -0.1318 -11.1536 41 1 0.7821 -1.2421 -11.7957 42 1 0.2267 -2.6332 -12.7580 43 1 0.9676 -3.3037 -10.4636 44 1 -0.7521 -3.6657 -10.7483 45 1 -1.7545 -1.5059 -7.2250 46 1 -0.0414 -1.0853 -6.9854 47 1 -1.4496 -3.5383 -5.8400 48 1 -1.0114 -2.0733 -4.9289 49 1 3.4792 -1.6604 -4.3112 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607746_15065232.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:27:45 Heat of formation + Delta-G solvation = -107.772694 kcal Electronic energy + Delta-G solvation = -33055.649568 eV Core-core repulsion = 28623.921344 eV Total energy + Delta-G solvation = -4431.728224 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.121 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.03041 -39.53665 -39.42893 -38.37861 -37.53035 -37.03839 -36.81452 -34.04267 -32.59013 -31.82805 -31.40268 -29.70050 -27.23139 -26.78719 -25.35232 -24.92787 -23.04991 -22.88424 -21.54014 -21.33162 -20.92313 -20.09297 -19.12573 -18.57525 -17.97144 -17.83087 -17.64653 -17.28515 -17.05575 -16.32471 -16.19021 -15.95417 -15.91761 -15.73804 -15.45975 -15.38861 -15.13148 -14.93302 -14.63675 -14.32694 -14.20551 -14.11428 -13.93260 -13.81419 -13.57185 -13.41247 -13.35636 -13.23660 -12.92953 -12.86879 -12.56580 -12.43116 -12.33114 -12.28676 -12.20754 -12.15651 -12.01598 -11.68860 -11.45954 -11.36830 -11.14310 -10.68711 -10.62166 -10.39434 -10.16416 -9.83054 -9.37191 -5.19165 -0.79641 -0.48168 0.33564 0.58568 0.98099 1.16998 1.53727 1.85170 2.02346 2.65194 2.71745 2.98070 3.21321 3.42737 3.62287 3.64496 3.68469 3.89130 3.92348 3.99557 4.02060 4.12854 4.13871 4.18757 4.21767 4.27827 4.35165 4.36226 4.37906 4.47738 4.52790 4.59266 4.59487 4.64046 4.73592 4.79936 4.82592 4.86329 4.90515 4.96297 5.03441 5.08484 5.14347 5.16161 5.24988 5.27176 5.34938 5.49839 5.97964 6.02512 6.06648 6.20731 6.66467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.034 4.034 3 Si 0.735 3.265 4 C -0.234 4.234 5 C -0.057 4.057 6 C -0.692 4.692 7 S 2.721 3.279 8 O -0.977 6.977 9 O -0.992 6.992 10 N -1.099 6.099 11 C 0.151 3.849 12 H 0.095 0.905 13 C -0.138 4.138 14 C -0.108 4.108 15 C 0.084 3.916 16 H 0.036 0.964 17 N -0.536 5.536 18 C 0.016 3.984 19 C 0.058 3.942 20 O -0.412 6.412 21 C 0.060 3.940 22 C 0.016 3.984 23 C -0.109 4.109 24 C -0.117 4.117 25 C -0.088 4.088 26 S 0.195 5.805 27 H 0.398 0.602 28 H 0.118 0.882 29 H -0.270 1.270 30 H -0.263 1.263 31 H 0.149 0.851 32 H 0.428 0.572 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.032 0.968 38 H 0.107 0.893 39 H 0.062 0.938 40 H 0.107 0.893 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.032 0.968 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.087 0.913 49 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.585 5.805 -3.280 7.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.146 4.146 3 Si 0.638 3.362 4 C -0.352 4.352 5 C -0.085 4.085 6 C -0.793 4.793 7 S 2.810 3.190 8 O -0.967 6.967 9 O -0.982 6.982 10 N -0.861 5.861 11 C 0.045 3.955 12 H 0.113 0.887 13 C -0.178 4.178 14 C -0.146 4.146 15 C -0.024 4.024 16 H 0.054 0.946 17 N -0.261 5.261 18 C -0.111 4.111 19 C -0.018 4.018 20 O -0.331 6.331 21 C -0.017 4.017 22 C -0.112 4.112 23 C -0.147 4.147 24 C -0.157 4.157 25 C -0.227 4.227 26 S 0.459 5.541 27 H 0.248 0.752 28 H 0.135 0.865 29 H -0.196 1.196 30 H -0.189 1.189 31 H 0.166 0.834 32 H 0.265 0.735 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.125 0.875 41 H 0.080 0.920 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.050 0.950 45 H 0.095 0.905 46 H 0.099 0.901 47 H 0.092 0.908 48 H 0.106 0.894 49 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -0.458 7.282 -2.494 7.711 hybrid contribution -1.376 -2.461 0.836 2.941 sum -1.835 4.822 -1.658 5.419 Atomic orbital electron populations 1.86511 1.16410 1.82114 1.50417 1.24592 0.85516 1.09786 0.94718 0.94249 0.79297 0.74885 0.87811 1.25183 1.07776 0.98882 1.03391 1.19616 0.99023 0.95174 0.94718 1.29783 1.15386 1.25953 1.08194 1.00921 0.72971 0.72931 0.72168 1.93577 1.52406 1.83861 1.66865 1.93560 1.84648 1.67354 1.52680 1.55367 1.34050 1.62764 1.33919 1.20990 0.99722 0.92825 0.81965 0.88697 1.22070 1.02736 0.98870 0.94109 1.21553 0.96324 0.99859 0.96869 1.21735 0.97012 0.94415 0.89228 0.94604 1.62289 1.28666 1.32885 1.02283 1.22865 0.89771 0.98703 0.99810 1.22819 1.01657 0.92463 0.84887 1.87971 1.37454 1.64907 1.42751 1.22776 0.85190 0.96163 0.97536 1.22834 1.02223 0.94987 0.91177 1.21595 1.02821 0.98160 0.92136 1.21788 0.95025 1.00599 0.98292 1.26257 0.97317 0.95880 1.03261 1.84275 1.45661 1.11499 1.12657 0.75190 0.86467 1.19582 1.18912 0.83388 0.73467 0.91210 0.91074 0.91489 0.90422 0.94961 0.87510 0.91956 0.87488 0.91994 0.87681 0.88230 0.94986 0.90526 0.90129 0.90759 0.89437 0.77841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.16 12.86 -148.98 -1.92 -0.76 16 2 C -0.03 0.07 2.96 71.24 0.21 0.28 16 3 Si 0.74 -2.88 30.97 68.60 2.12 -0.75 16 4 C -0.23 0.35 5.72 24.59 0.14 0.49 16 5 C -0.06 -0.06 9.56 21.22 0.20 0.14 16 6 C -0.69 0.04 5.73 21.22 0.12 0.17 16 7 S 2.72 6.78 5.71 -56.49 -0.32 6.46 16 8 O -0.98 -7.03 16.90 -128.00 -2.16 -9.20 16 9 O -0.99 -9.94 17.63 -128.00 -2.26 -12.20 16 10 N -1.10 4.72 5.47 -169.39 -0.93 3.79 16 11 C 0.15 -0.94 2.65 44.99 0.12 -0.82 16 12 H 0.10 -0.78 7.35 -2.39 -0.02 -0.80 16 13 C -0.14 0.54 5.53 30.59 0.17 0.70 16 14 C -0.11 0.50 4.97 30.59 0.15 0.65 16 15 C 0.08 -0.39 1.94 44.92 0.09 -0.31 16 16 H 0.04 -0.10 8.14 -2.39 -0.02 -0.12 16 17 N -0.54 1.38 4.59 -869.96 -4.00 -2.62 16 18 C 0.02 -0.05 5.25 86.32 0.45 0.40 16 19 C 0.06 -0.08 7.01 72.02 0.50 0.43 16 20 O -0.41 -1.64 10.83 -148.98 -1.61 -3.25 16 21 C 0.06 -0.03 7.01 72.02 0.50 0.48 16 22 C 0.02 -0.03 5.34 86.32 0.46 0.43 16 23 C -0.11 0.86 4.86 30.58 0.15 1.01 16 24 C -0.12 1.03 5.45 30.58 0.17 1.20 16 25 C -0.09 0.31 10.20 66.72 0.68 0.99 16 26 S 0.20 -0.91 20.58 -56.49 -1.16 -2.07 16 27 H 0.40 -4.29 8.70 -74.06 -0.64 -4.94 16 28 H 0.12 -0.09 7.96 -2.38 -0.02 -0.11 16 29 H -0.27 -0.70 7.11 99.48 0.71 0.01 16 30 H -0.26 -0.10 7.11 99.48 0.71 0.61 16 31 H 0.15 0.32 7.97 -2.91 -0.02 0.30 16 32 H 0.43 -3.10 8.84 -96.74 -0.85 -3.95 16 33 H 0.07 -0.03 7.64 -2.39 -0.02 -0.05 16 34 H 0.07 -0.29 8.14 -2.38 -0.02 -0.30 16 35 H 0.07 -0.26 6.35 -2.39 -0.02 -0.28 16 36 H 0.08 -0.36 8.14 -2.38 -0.02 -0.38 16 37 H 0.03 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.11 -0.69 6.11 -2.39 -0.01 -0.71 16 39 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 40 H 0.11 -0.41 8.14 -2.39 -0.02 -0.43 16 41 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.10 -0.38 6.19 -2.39 -0.01 -0.39 16 44 H 0.03 0.01 8.14 -2.39 -0.02 -0.01 16 45 H 0.08 -0.65 6.30 -2.39 -0.02 -0.67 16 46 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 47 H 0.07 -0.64 8.14 -2.39 -0.02 -0.66 16 48 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 49 H 0.20 -1.60 8.00 -2.91 -0.02 -1.63 16 Total: 0.00 -22.42 403.05 -8.59 -31.01 By element: Atomic # 1 Polarization: -16.18 SS G_CDS: -0.48 Total: -16.66 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 4.12 Total: 6.24 kcal Atomic # 7 Polarization: 6.10 SS G_CDS: -4.92 Total: 1.17 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -7.95 Total: -25.41 kcal Atomic # 14 Polarization: -2.88 SS G_CDS: 2.12 Total: -0.75 kcal Atomic # 16 Polarization: 5.88 SS G_CDS: -1.48 Total: 4.39 kcal Total: -22.42 -8.59 -31.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607746_15065232.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.761 kcal (2) G-P(sol) polarization free energy of solvation -22.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds