Wall clock time and date at job start Mon Mar 8 2021 10:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86297 * 109.47253 * 2 1 4 4 C 1.50706 * 109.46904 * 240.00265 * 2 1 3 5 5 C 1.38213 * 120.00082 * 284.82153 * 4 2 1 6 6 S 1.76199 * 119.99972 * 0.02562 * 5 4 2 7 7 O 1.42102 * 106.40094 * 312.93476 * 6 5 4 8 8 O 1.42095 * 106.40131 * 180.02562 * 6 5 4 9 9 N 1.65607 * 107.21831 * 66.47128 * 6 5 4 10 10 C 1.46500 * 119.99615 * 63.38554 * 9 6 5 11 11 H 1.08993 * 109.47582 * 6.54207 * 10 9 6 12 12 C 1.52999 * 109.46720 * 126.54617 * 10 9 6 13 13 C 1.53004 * 109.47079 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46986 * 299.99693 * 13 12 10 15 15 H 1.09004 * 109.47430 * 300.00038 * 14 13 12 16 16 N 1.46899 * 109.47305 * 179.97438 * 14 13 12 17 17 C 1.47017 * 111.00043 * 298.63342 * 16 14 13 18 18 C 1.53096 * 109.25964 * 177.60635 * 17 16 14 19 19 O 1.43014 * 109.25804 * 56.84970 * 18 17 16 20 20 C 1.43013 * 113.73834 * 301.32827 * 19 18 17 21 21 C 1.47011 * 111.00292 * 175.00215 * 16 14 13 22 22 C 1.52999 * 109.47434 * 59.99981 * 14 13 12 23 23 C 1.53001 * 109.46854 * 246.53835 * 10 9 6 24 24 C 1.38252 * 119.99962 * 180.27702 * 5 4 2 25 25 C 1.38224 * 120.00103 * 359.47142 * 24 5 4 26 26 C 1.38253 * 119.99302 * 0.52910 * 25 24 5 27 27 C 1.38213 * 120.00588 * 359.74809 * 26 25 24 28 28 H 0.96705 * 114.00271 * 299.99565 * 1 2 3 29 29 H 1.09003 * 109.47382 * 120.00717 * 2 1 3 30 30 H 1.48493 * 110.00496 * 300.00410 * 3 2 1 31 31 H 1.48502 * 109.99791 * 61.32328 * 3 2 1 32 32 H 0.96995 * 119.99927 * 243.38798 * 9 6 5 33 33 H 1.08994 * 109.47916 * 59.99693 * 12 10 9 34 34 H 1.09001 * 109.46924 * 299.99524 * 12 10 9 35 35 H 1.08993 * 109.47273 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.46985 * 59.99170 * 13 12 10 37 37 H 1.08996 * 109.50953 * 297.54335 * 17 16 14 38 38 H 1.09005 * 109.50256 * 57.66895 * 17 16 14 39 39 H 1.09007 * 109.50309 * 296.91513 * 18 17 16 40 40 H 1.08996 * 109.54122 * 176.80903 * 18 17 16 41 41 H 1.08998 * 109.50968 * 298.73983 * 20 19 18 42 42 H 1.08997 * 109.50546 * 178.60351 * 20 19 18 43 43 H 1.09007 * 109.50276 * 302.32735 * 21 16 14 44 44 H 1.08996 * 109.50830 * 62.45388 * 21 16 14 45 45 H 1.09005 * 109.47255 * 59.99452 * 22 14 13 46 46 H 1.09001 * 109.47397 * 180.02562 * 22 14 13 47 47 H 1.08994 * 109.47846 * 300.00445 * 23 10 9 48 48 H 1.09005 * 109.47090 * 60.00611 * 23 10 9 49 49 H 1.07999 * 120.00354 * 179.72424 * 24 5 4 50 50 H 1.07995 * 120.00002 * 180.29671 * 25 24 5 51 51 H 1.08004 * 119.99308 * 179.76368 * 26 25 24 52 52 H 1.07999 * 120.00116 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 -1.2306 5 6 1.8729 -2.0893 -1.3047 6 16 1.2106 -3.0166 0.0392 7 8 1.8130 -2.5005 1.2182 8 8 1.2897 -4.3839 -0.3392 9 7 -0.4016 -2.6513 0.1395 10 6 -1.3000 -2.9924 -0.9662 11 1 -0.7574 -3.5786 -1.7077 12 6 -2.4781 -3.8098 -0.4324 13 6 -3.4168 -4.1656 -1.5870 14 6 -3.9389 -2.8812 -2.2341 15 1 -4.4813 -2.2950 -1.4922 16 7 -4.8397 -3.2227 -3.3430 17 6 -4.1320 -3.9872 -4.3804 18 6 -5.1190 -4.3726 -5.4855 19 8 -5.7292 -3.1889 -6.0068 20 6 -6.4278 -2.4205 -5.0236 21 6 -5.4540 -2.0153 -3.9139 22 6 -2.7609 -2.0637 -2.7679 23 6 -1.8222 -1.7083 -1.6137 24 6 2.3390 -2.7413 -2.4312 25 6 2.8532 -2.0136 -3.4879 26 6 2.9116 -0.6343 -3.4136 27 6 2.4509 0.0173 -2.2851 28 1 -0.3934 0.4417 0.7651 29 1 1.7923 -0.5139 0.8899 30 1 1.5615 2.4679 -1.2083 31 1 1.5879 2.4584 1.2243 32 1 -0.7509 -2.2114 0.9303 33 1 -3.0208 -3.2236 0.3092 34 1 -2.1061 -4.7246 0.0290 35 1 -4.2563 -4.7475 -1.2067 36 1 -2.8743 -4.7516 -2.3289 37 1 -3.3339 -3.3761 -4.8021 38 1 -3.7068 -4.8896 -3.9411 39 1 -5.8874 -5.0277 -5.0748 40 1 -4.5881 -4.8904 -6.2842 41 1 -7.2343 -3.0187 -4.5995 42 1 -6.8428 -1.5260 -5.4881 43 1 -5.9940 -1.4782 -3.1339 44 1 -4.6771 -1.3727 -4.3280 45 1 -2.2184 -2.6498 -3.5098 46 1 -3.1328 -1.1485 -3.2285 47 1 -2.3648 -1.1220 -0.8723 48 1 -0.9829 -1.1259 -1.9941 49 1 2.2975 -3.8190 -2.4874 50 1 3.2129 -2.5226 -4.3698 51 1 3.3169 -0.0659 -4.2377 52 1 2.4961 1.0948 -2.2273 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607746_2726874.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:27:57 Heat of formation + Delta-G solvation = -103.665612 kcal Electronic energy + Delta-G solvation = -36371.830937 eV Core-core repulsion = 31851.128563 eV Total energy + Delta-G solvation = -4520.702374 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.165 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.24156 -40.63574 -39.41706 -38.60229 -37.61078 -37.07006 -36.80347 -33.93133 -32.96435 -32.41814 -32.27895 -31.67874 -29.68255 -26.94457 -26.78136 -25.15461 -24.43382 -23.75461 -22.93081 -22.63851 -21.67770 -20.81921 -20.15526 -19.06676 -18.56507 -18.44583 -17.82313 -17.62037 -17.15474 -17.06161 -16.72167 -16.13579 -16.06184 -15.98845 -15.84843 -15.58940 -15.39521 -15.26351 -15.13761 -15.06612 -14.67999 -14.35327 -14.12916 -13.95714 -13.77313 -13.57133 -13.40459 -13.38744 -13.31089 -13.21633 -13.13009 -13.01872 -12.62037 -12.53960 -12.31258 -12.24513 -12.05316 -11.99164 -11.83924 -11.71654 -11.57233 -11.46391 -11.19816 -10.67170 -10.55628 -10.40629 -10.32152 -10.04636 -9.29730 -4.94848 -0.69508 -0.29227 0.12521 1.21500 1.55843 1.84786 1.88963 2.33749 2.62925 2.72482 2.94668 3.17259 3.31211 3.59805 3.69494 3.73488 3.76707 3.83569 3.92833 3.98364 4.00634 4.07988 4.09834 4.18665 4.19512 4.22392 4.27573 4.30911 4.34847 4.45929 4.46470 4.49411 4.54534 4.59251 4.61425 4.69993 4.73065 4.79702 4.81238 4.81748 4.96920 4.97749 4.99505 5.11918 5.14939 5.17294 5.21754 5.22823 5.28249 5.40066 5.48193 5.74152 5.95586 6.00943 6.14111 6.16291 6.53236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.141 4.141 3 Si 0.764 3.236 4 C 0.027 3.973 5 C -0.669 4.669 6 S 2.704 3.296 7 O -0.984 6.984 8 O -0.992 6.992 9 N -1.083 6.083 10 C 0.159 3.841 11 H 0.076 0.924 12 C -0.121 4.121 13 C -0.106 4.106 14 C 0.088 3.912 15 H 0.090 0.910 16 N -0.536 5.536 17 C 0.013 3.987 18 C 0.059 3.941 19 O -0.409 6.409 20 C 0.059 3.941 21 C 0.018 3.982 22 C -0.147 4.147 23 C -0.106 4.106 24 C -0.038 4.038 25 C -0.137 4.137 26 C -0.055 4.055 27 C -0.149 4.149 28 H 0.397 0.603 29 H 0.109 0.891 30 H -0.279 1.279 31 H -0.282 1.282 32 H 0.428 0.572 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.040 0.960 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.107 0.893 41 H 0.059 0.941 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.040 0.960 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.063 0.937 49 H 0.144 0.856 50 H 0.158 0.842 51 H 0.162 0.838 52 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.001 3.638 -1.186 3.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.340 6.340 2 C -0.250 4.250 3 Si 0.667 3.333 4 C 0.025 3.975 5 C -0.757 4.757 6 S 2.796 3.204 7 O -0.974 6.974 8 O -0.982 6.982 9 N -0.845 5.845 10 C 0.052 3.948 11 H 0.094 0.906 12 C -0.161 4.161 13 C -0.145 4.145 14 C -0.020 4.020 15 H 0.108 0.892 16 N -0.260 5.260 17 C -0.115 4.115 18 C -0.018 4.018 19 O -0.328 6.328 20 C -0.017 4.017 21 C -0.110 4.110 22 C -0.187 4.187 23 C -0.146 4.146 24 C -0.057 4.057 25 C -0.156 4.156 26 C -0.073 4.073 27 C -0.167 4.167 28 H 0.248 0.752 29 H 0.126 0.874 30 H -0.205 1.205 31 H -0.208 1.208 32 H 0.265 0.735 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.116 0.884 39 H 0.078 0.922 40 H 0.125 0.875 41 H 0.078 0.922 42 H 0.125 0.875 43 H 0.114 0.886 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.082 0.918 49 H 0.162 0.838 50 H 0.175 0.825 51 H 0.180 0.820 52 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.030 3.231 -1.330 3.495 hybrid contribution -0.472 0.886 0.178 1.019 sum -0.442 4.117 -1.152 4.298 Atomic orbital electron populations 1.86584 1.15719 1.80532 1.51134 1.25544 0.86487 1.14156 0.98819 0.93566 0.90914 0.71408 0.77363 1.18968 0.93136 0.91104 0.94249 1.30553 1.19500 1.06689 1.18995 1.01237 0.72967 0.72984 0.73194 1.93507 1.76228 1.80705 1.46927 1.93549 1.86653 1.33444 1.84530 1.55044 1.24016 1.77225 1.28203 1.20792 0.91095 0.95888 0.87040 0.90622 1.21836 0.95344 1.00440 0.98479 1.21537 0.99020 0.96658 0.97284 1.21800 0.91313 0.96199 0.92649 0.89202 1.62483 1.32899 1.21043 1.09560 1.22869 0.96085 0.99552 0.93004 1.22796 0.95562 0.86867 0.96561 1.87969 1.71066 1.37810 1.35973 1.22790 0.93692 0.96246 0.89012 1.22791 0.98026 0.92034 0.98161 1.22170 0.97553 1.00319 0.98673 1.21701 0.98988 0.96559 0.97338 1.21225 0.92287 1.00998 0.91235 1.21682 0.99770 0.94718 0.99404 1.21843 0.93168 0.94875 0.97447 1.21510 1.00466 1.01054 0.93702 0.75188 0.87360 1.20526 1.20833 0.73458 0.89757 0.91203 0.90450 0.91773 0.94138 0.88427 0.92242 0.87538 0.92228 0.87474 0.88583 0.94220 0.92307 0.92034 0.90140 0.91817 0.83803 0.82471 0.82000 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 2.22 9.03 -148.98 -1.34 0.88 16 2 C -0.14 0.15 2.01 71.24 0.14 0.29 16 3 Si 0.76 -2.33 30.20 68.60 2.07 -0.26 16 4 C 0.03 0.04 5.28 -19.86 -0.10 -0.07 16 5 C -0.67 -2.28 5.86 22.27 0.13 -2.15 16 6 S 2.70 14.37 4.97 -56.49 -0.28 14.09 16 7 O -0.98 -9.08 15.38 -128.00 -1.97 -11.05 16 8 O -0.99 -11.04 16.53 -128.00 -2.12 -13.16 16 9 N -1.08 1.28 3.77 -169.39 -0.64 0.64 16 10 C 0.16 -0.28 2.79 44.99 0.13 -0.15 16 11 H 0.08 0.02 7.62 -2.39 -0.02 0.00 16 12 C -0.12 0.38 5.53 30.60 0.17 0.55 16 13 C -0.11 0.30 5.01 30.60 0.15 0.45 16 14 C 0.09 -0.22 2.23 44.92 0.10 -0.12 16 15 H 0.09 -0.27 8.12 -2.38 -0.02 -0.29 16 16 N -0.54 0.17 4.72 -869.97 -4.10 -3.94 16 17 C 0.01 0.00 4.86 86.31 0.42 0.42 16 18 C 0.06 0.06 7.01 72.01 0.50 0.57 16 19 O -0.41 -2.18 10.83 -148.98 -1.61 -3.80 16 20 C 0.06 0.04 7.01 72.02 0.50 0.55 16 21 C 0.02 -0.01 5.31 86.32 0.46 0.45 16 22 C -0.15 0.30 4.49 30.58 0.14 0.44 16 23 C -0.11 0.30 4.56 30.58 0.14 0.43 16 24 C -0.04 -0.07 9.55 22.27 0.21 0.14 16 25 C -0.14 0.28 10.05 22.27 0.22 0.50 16 26 C -0.06 0.18 10.05 22.27 0.22 0.41 16 27 C -0.15 0.17 8.66 22.27 0.19 0.36 16 28 H 0.40 -4.45 8.74 -74.05 -0.65 -5.10 16 29 H 0.11 0.04 5.31 -2.39 -0.01 0.03 16 30 H -0.28 -0.30 6.74 99.48 0.67 0.37 16 31 H -0.28 -0.32 7.11 99.48 0.71 0.39 16 32 H 0.43 -2.28 8.55 -96.75 -0.83 -3.11 16 33 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 34 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.06 -0.13 6.38 -2.39 -0.02 -0.15 16 37 H 0.04 0.05 6.42 -2.39 -0.02 0.03 16 38 H 0.10 -0.19 6.22 -2.38 -0.01 -0.21 16 39 H 0.06 0.05 8.14 -2.38 -0.02 0.03 16 40 H 0.11 -0.16 8.14 -2.39 -0.02 -0.17 16 41 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 42 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.10 -0.29 8.13 -2.38 -0.02 -0.30 16 44 H 0.04 0.03 6.56 -2.39 -0.02 0.01 16 45 H 0.06 -0.02 6.43 -2.38 -0.02 -0.04 16 46 H 0.06 -0.04 6.58 -2.39 -0.02 -0.06 16 47 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 48 H 0.06 0.01 7.45 -2.38 -0.02 -0.01 16 49 H 0.14 0.18 7.33 -2.91 -0.02 0.16 16 50 H 0.16 -1.10 8.06 -2.91 -0.02 -1.12 16 51 H 0.16 -1.48 8.06 -2.91 -0.02 -1.50 16 52 H 0.15 -0.61 4.90 -2.91 -0.01 -0.62 16 Total: 0.00 -19.79 395.52 -6.77 -26.56 By element: Atomic # 1 Polarization: -12.52 SS G_CDS: -0.51 Total: -13.04 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 3.73 Total: 3.07 kcal Atomic # 7 Polarization: 1.45 SS G_CDS: -4.74 Total: -3.29 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -7.04 Total: -27.13 kcal Atomic # 14 Polarization: -2.33 SS G_CDS: 2.07 Total: -0.26 kcal Atomic # 16 Polarization: 14.37 SS G_CDS: -0.28 Total: 14.09 kcal Total: -19.79 -6.77 -26.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607746_2726874.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.106 kcal (2) G-P(sol) polarization free energy of solvation -19.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds