Wall clock time and date at job start Mon Mar 8 2021 10:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 H 1.00904 * 109.47690 * 2 1 4 4 C 1.46903 * 109.47060 * 120.00259 * 2 1 3 5 5 C 1.46900 * 109.46980 * 239.99810 * 2 1 3 6 6 C 1.53003 * 109.46946 * 65.00455 * 5 2 1 7 7 H 1.09004 * 112.85164 * 316.19196 * 6 5 2 8 8 C 1.53778 * 113.61726 * 87.50503 * 6 5 2 9 9 C 1.53778 * 87.08449 * 139.98071 * 8 6 5 10 10 H 1.09000 * 113.61263 * 89.11673 * 9 8 6 11 11 N 1.46502 * 113.61376 * 220.01807 * 9 8 6 12 12 S 1.65600 * 120.00088 * 242.49677 * 11 9 8 13 13 O 1.42092 * 106.40060 * 178.54069 * 12 11 9 14 14 O 1.42103 * 106.40022 * 311.45895 * 12 11 9 15 15 C 1.76196 * 107.21715 * 64.99807 * 12 11 9 16 16 C 1.38241 * 120.00269 * 269.72532 * 15 12 11 17 17 C 1.38231 * 119.99826 * 179.81008 * 16 15 12 18 18 C 1.38237 * 120.00418 * 0.39956 * 17 16 15 19 19 C 1.50692 * 120.00223 * 179.83097 * 18 17 16 20 20 O 1.42903 * 109.47353 * 245.02255 * 19 18 17 21 21 Si 1.86306 * 109.47241 * 5.02547 * 19 18 17 22 22 C 1.38237 * 119.99645 * 359.85453 * 18 17 16 23 23 C 1.38235 * 120.00089 * 359.96167 * 22 18 17 24 24 C 1.53784 * 87.08081 * 334.56700 * 9 8 6 25 25 H 1.09000 * 109.47096 * 59.99779 * 1 2 3 26 26 H 1.08999 * 109.47734 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47083 * 300.00435 * 1 2 3 28 28 H 1.09001 * 109.47082 * 179.97438 * 4 2 1 29 29 H 1.08993 * 109.46939 * 299.99249 * 4 2 1 30 30 H 1.09002 * 109.46791 * 59.99734 * 4 2 1 31 31 H 1.08996 * 109.47281 * 305.00499 * 5 2 1 32 32 H 1.09005 * 109.47555 * 184.99998 * 5 2 1 33 33 H 1.08999 * 113.61111 * 254.53134 * 8 6 5 34 34 H 1.09004 * 113.61682 * 25.42530 * 8 6 5 35 35 H 0.96997 * 119.99802 * 62.49296 * 11 9 8 36 36 H 1.07998 * 119.99562 * 0.02562 * 16 15 12 37 37 H 1.08001 * 119.99848 * 180.22915 * 17 16 15 38 38 H 1.09004 * 109.47087 * 125.02524 * 19 18 17 39 39 H 0.96700 * 113.99779 * 60.00357 * 20 19 18 40 40 H 1.48498 * 109.99823 * 179.97438 * 21 19 18 41 41 H 1.48494 * 109.99777 * 301.31565 * 21 19 18 42 42 H 1.08000 * 119.99696 * 179.97438 * 22 18 17 43 43 H 1.07998 * 119.99734 * 180.02562 * 23 22 18 44 44 H 1.09004 * 113.61451 * 270.88641 * 24 9 8 45 45 H 1.08994 * 113.61477 * 139.97943 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8054 0.9513 0.0000 4 6 1.9586 -0.6926 1.1994 5 6 1.9586 -0.6925 -1.1994 6 6 1.5539 0.0977 -2.4455 7 1 0.5237 0.4517 -2.4062 8 6 2.5664 1.1855 -2.8409 9 6 2.3145 0.7781 -4.3022 10 1 1.4928 1.3195 -4.7710 11 7 3.5274 0.7598 -5.1237 12 16 3.6652 1.7813 -6.4198 13 8 4.9500 1.5478 -6.9798 14 8 2.4595 1.6538 -7.1610 15 6 3.6891 3.4257 -5.7876 16 6 2.5060 4.1237 -5.6317 17 6 2.5246 5.4124 -5.1320 18 6 3.7268 6.0062 -4.7960 19 6 3.7473 7.4125 -4.2549 20 8 4.4230 8.2685 -5.1783 21 14 1.9994 8.0120 -4.0170 22 6 4.9103 5.3102 -4.9568 23 6 4.8914 4.0201 -5.4530 24 6 1.9135 -0.6059 -3.7649 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.0487 -0.6930 1.1992 29 1 1.5954 -0.1787 2.0894 30 1 1.5952 -1.7202 1.1993 31 1 1.5239 -1.6910 -1.2454 32 1 3.0450 -0.7708 -1.1559 33 1 2.2345 2.1969 -2.6062 34 1 3.5814 0.9821 -2.4996 35 1 4.2498 0.1494 -4.9084 36 1 1.5671 3.6607 -5.8971 37 1 1.6000 5.9563 -5.0068 38 1 4.2694 7.4261 -3.2981 39 1 4.0124 8.3054 -6.0531 40 1 2.0060 9.3976 -3.4831 41 1 1.2674 7.9682 -5.3083 42 1 5.8496 5.7743 -4.6947 43 1 5.8160 3.4762 -5.5782 44 1 2.7500 -1.2990 -3.6762 45 1 1.0546 -1.0406 -4.2760 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607758_13421422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:33:49 Heat of formation + Delta-G solvation = 51.555720 kcal Electronic energy + Delta-G solvation = -26691.179123 eV Core-core repulsion = 22921.535483 eV Total energy + Delta-G solvation = -3769.643641 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.142 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.03813 -40.73584 -39.65377 -38.44100 -37.91036 -37.07884 -34.35095 -33.07882 -32.23198 -29.80307 -29.32141 -27.29159 -26.72029 -25.65435 -24.14910 -23.54802 -23.03273 -21.08652 -20.52380 -19.43776 -19.11230 -18.66888 -18.27920 -17.83695 -17.38455 -17.04092 -16.68506 -16.45507 -16.15768 -16.08742 -15.85597 -15.53976 -14.91035 -14.73611 -14.54255 -14.07686 -13.92027 -13.81516 -13.75688 -13.52981 -13.41697 -13.36780 -13.34360 -13.27088 -13.24607 -13.06746 -12.92433 -12.70981 -12.60355 -12.03980 -11.84226 -11.76067 -11.63555 -11.39969 -10.78570 -10.51295 -10.36051 -10.17669 -5.06237 -0.77771 -0.42301 0.15721 1.09326 1.19121 1.54488 1.89798 1.95868 2.30710 2.68570 2.97979 3.02688 3.17631 3.26465 3.27348 3.46636 3.47807 3.54653 3.72510 3.79032 3.79678 3.83469 3.94702 4.16048 4.18004 4.25683 4.29868 4.35176 4.40653 4.43855 4.50484 4.57518 4.58681 4.76409 4.81211 4.84278 4.87489 4.90574 4.91914 4.92399 4.96378 5.01514 5.11481 5.17406 5.23678 5.52943 5.66650 6.04976 6.32489 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.010149 B = 0.004292 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.290860 B = 6521.923241 C = 8430.717745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.370 5.370 3 H 0.438 0.562 4 C -0.047 4.047 5 C 0.009 3.991 6 C -0.123 4.123 7 H 0.136 0.864 8 C -0.154 4.154 9 C 0.094 3.906 10 H 0.116 0.884 11 N -1.089 6.089 12 S 2.702 3.298 13 O -0.999 6.999 14 O -0.988 6.988 15 C -0.670 4.670 16 C -0.018 4.018 17 C -0.137 4.137 18 C -0.059 4.059 19 C -0.094 4.094 20 O -0.549 6.549 21 Si 0.784 3.216 22 C -0.121 4.121 23 C -0.026 4.026 24 C -0.136 4.136 25 H 0.126 0.874 26 H 0.118 0.882 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.117 0.883 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.430 0.570 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.137 0.863 39 H 0.387 0.613 40 H -0.313 1.313 41 H -0.287 1.287 42 H 0.137 0.863 43 H 0.144 0.856 44 H 0.104 0.896 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.884 -15.900 26.966 32.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 N 0.053 4.947 3 H 0.275 0.725 4 C -0.189 4.189 5 C -0.113 4.113 6 C -0.142 4.142 7 H 0.154 0.846 8 C -0.193 4.193 9 C -0.012 4.012 10 H 0.134 0.866 11 N -0.851 5.851 12 S 2.794 3.206 13 O -0.989 6.989 14 O -0.978 6.978 15 C -0.759 4.759 16 C -0.037 4.037 17 C -0.155 4.155 18 C -0.059 4.059 19 C -0.203 4.203 20 O -0.357 6.357 21 Si 0.691 3.309 22 C -0.140 4.140 23 C -0.045 4.045 24 C -0.177 4.177 25 H 0.144 0.856 26 H 0.137 0.863 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.136 0.864 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.117 0.883 34 H 0.128 0.872 35 H 0.268 0.732 36 H 0.178 0.822 37 H 0.173 0.827 38 H 0.155 0.845 39 H 0.237 0.763 40 H -0.242 1.242 41 H -0.214 1.214 42 H 0.155 0.845 43 H 0.162 0.838 44 H 0.122 0.878 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.253 -15.625 26.311 32.273 hybrid contribution 1.222 1.166 -1.228 2.088 sum -9.032 -14.459 25.083 30.328 Atomic orbital electron populations 1.24215 0.76245 1.09567 1.09714 1.44790 1.15923 1.19497 1.14476 0.72507 1.24115 1.05682 1.02331 0.86743 1.23891 1.05729 0.99593 0.82098 1.22870 1.02131 0.96676 0.92507 0.84601 1.23846 1.01093 1.00683 0.93676 1.22801 0.86070 1.00680 0.91671 0.86619 1.55209 1.27702 1.53164 1.49059 1.01338 0.72040 0.73781 0.73460 1.93579 1.42885 1.85571 1.76885 1.93583 1.48535 1.86412 1.69265 1.30787 1.00050 1.25159 1.19870 1.21116 0.97107 0.94065 0.91459 1.21407 0.98006 0.95912 1.00202 1.20699 0.93979 0.95894 0.95363 1.25484 1.11402 0.87448 0.95920 1.86630 1.55373 1.67022 1.26696 0.94404 0.72812 0.80924 0.82799 1.21311 0.98843 0.94185 0.99657 1.21080 0.96783 0.95228 0.91412 1.23398 1.03089 0.95935 0.95248 0.85590 0.86304 0.85551 0.85767 0.85671 0.86410 0.84435 0.84065 0.88321 0.87173 0.73164 0.82221 0.82730 0.84525 0.76331 1.24161 1.21409 0.84506 0.83821 0.87758 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 3.63 8.97 127.69 1.15 4.77 16 2 N -0.37 25.31 0.66 -948.84 -0.62 24.69 16 3 H 0.44 -31.42 8.44 -89.69 -0.76 -32.18 16 4 C -0.05 3.06 9.19 127.69 1.17 4.23 16 5 C 0.01 -0.58 4.48 86.30 0.39 -0.19 16 6 C -0.12 6.91 3.58 -10.27 -0.04 6.88 16 7 H 0.14 -8.08 6.10 -2.39 -0.01 -8.09 16 8 C -0.15 7.77 7.43 31.12 0.23 8.00 16 9 C 0.09 -3.77 4.42 45.52 0.20 -3.57 16 10 H 0.12 -4.44 7.77 -2.39 -0.02 -4.46 16 11 N -1.09 35.11 5.79 -167.19 -0.97 34.14 16 12 S 2.70 -53.83 5.71 -56.49 -0.32 -54.16 16 13 O -1.00 10.61 17.28 -128.00 -2.21 8.40 16 14 O -0.99 12.88 16.80 -128.00 -2.15 10.73 16 15 C -0.67 14.79 5.95 22.27 0.13 14.92 16 16 C -0.02 0.45 9.52 22.27 0.21 0.66 16 17 C -0.14 3.41 8.67 22.27 0.19 3.60 16 18 C -0.06 1.31 5.35 -19.87 -0.11 1.21 16 19 C -0.09 2.02 2.80 71.23 0.20 2.22 16 20 O -0.55 8.21 12.83 -148.98 -1.91 6.30 16 21 Si 0.78 -17.45 29.88 68.60 2.05 -15.40 16 22 C -0.12 2.50 9.69 22.27 0.22 2.71 16 23 C -0.03 0.53 9.52 22.27 0.21 0.75 16 24 C -0.14 6.20 7.43 31.12 0.23 6.43 16 25 H 0.13 -8.24 6.10 -2.39 -0.01 -8.25 16 26 H 0.12 -7.60 8.11 -2.39 -0.02 -7.62 16 27 H 0.13 -8.23 8.14 -2.38 -0.02 -8.25 16 28 H 0.12 -8.08 8.11 -2.39 -0.02 -8.10 16 29 H 0.12 -8.11 8.14 -2.39 -0.02 -8.13 16 30 H 0.12 -7.53 8.14 -2.39 -0.02 -7.55 16 31 H 0.14 -8.74 8.09 -2.39 -0.02 -8.76 16 32 H 0.14 -9.13 7.79 -2.38 -0.02 -9.15 16 33 H 0.10 -5.09 8.14 -2.39 -0.02 -5.11 16 34 H 0.11 -5.70 7.90 -2.38 -0.02 -5.72 16 35 H 0.43 -15.28 8.94 -96.75 -0.87 -16.14 16 36 H 0.16 -4.52 7.61 -2.91 -0.02 -4.54 16 37 H 0.16 -4.43 4.85 -2.91 -0.01 -4.45 16 38 H 0.14 -3.32 7.96 -2.38 -0.02 -3.34 16 39 H 0.39 -7.56 8.70 -74.06 -0.64 -8.21 16 40 H -0.31 3.70 7.11 99.48 0.71 4.40 16 41 H -0.29 4.97 7.01 99.48 0.70 5.67 16 42 H 0.14 -2.85 8.06 -2.91 -0.02 -2.87 16 43 H 0.14 -3.08 7.62 -2.91 -0.02 -3.10 16 44 H 0.10 -4.79 8.10 -2.39 -0.02 -4.81 16 45 H 0.08 -3.22 8.14 -2.39 -0.02 -3.24 16 Total: 1.00 -91.70 371.03 -2.97 -94.67 By element: Atomic # 1 Polarization: -160.77 SS G_CDS: -1.22 Total: -161.99 kcal Atomic # 6 Polarization: 48.23 SS G_CDS: 4.39 Total: 52.62 kcal Atomic # 7 Polarization: 60.42 SS G_CDS: -1.59 Total: 58.83 kcal Atomic # 8 Polarization: 31.70 SS G_CDS: -6.27 Total: 25.43 kcal Atomic # 14 Polarization: -17.45 SS G_CDS: 2.05 Total: -15.40 kcal Atomic # 16 Polarization: -53.83 SS G_CDS: -0.32 Total: -54.16 kcal Total: -91.70 -2.97 -94.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607758_13421422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.227 kcal (2) G-P(sol) polarization free energy of solvation -91.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds