Wall clock time and date at job start Mon Mar 8 2021 10:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 H 1.00902 * 109.46901 * 2 1 4 4 C 1.46909 * 109.47166 * 119.99665 * 2 1 3 5 5 C 1.46894 * 109.47088 * 239.99662 * 2 1 3 6 6 C 1.53001 * 109.47096 * 174.99830 * 5 2 1 7 7 H 1.09000 * 112.85399 * 316.20237 * 6 5 2 8 8 C 1.53962 * 113.74125 * 87.40097 * 6 5 2 9 9 C 1.53786 * 87.01837 * 139.94572 * 8 6 5 10 10 H 1.09002 * 113.61587 * 89.23103 * 9 8 6 11 11 N 1.46498 * 113.61223 * 220.04986 * 9 8 6 12 12 S 1.65602 * 119.99612 * 243.85742 * 11 9 8 13 13 O 1.42104 * 106.40175 * 178.81816 * 12 11 9 14 14 O 1.42095 * 106.40656 * 311.73868 * 12 11 9 15 15 C 1.76203 * 107.21635 * 65.28001 * 12 11 9 16 16 C 1.33389 * 125.19928 * 90.00084 * 15 12 11 17 17 C 1.50699 * 122.54345 * 359.94813 * 16 15 12 18 18 O 1.42893 * 109.47532 * 285.00527 * 17 16 15 19 19 Si 1.86308 * 109.47002 * 165.00445 * 17 16 15 20 20 C 1.38433 * 114.91730 * 179.97438 * 16 15 12 21 21 C 1.33389 * 114.91849 * 359.97438 * 20 16 15 22 22 S 1.75879 * 125.20439 * 269.68817 * 15 12 11 23 23 C 1.53776 * 87.17168 * 334.64076 * 9 8 6 24 24 H 1.09006 * 109.47166 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47369 * 300.00406 * 1 2 3 26 26 H 1.08999 * 109.47491 * 60.00511 * 1 2 3 27 27 H 1.08993 * 109.46935 * 59.99728 * 4 2 1 28 28 H 1.08994 * 109.46954 * 179.97438 * 4 2 1 29 29 H 1.09003 * 109.46918 * 300.00205 * 4 2 1 30 30 H 1.08996 * 109.47382 * 55.00057 * 5 2 1 31 31 H 1.08999 * 109.47285 * 294.99437 * 5 2 1 32 32 H 1.08996 * 113.61350 * 25.42747 * 8 6 5 33 33 H 1.08992 * 113.66987 * 254.47029 * 8 6 5 34 34 H 0.97001 * 120.00384 * 64.14220 * 11 9 8 35 35 H 1.08998 * 109.46945 * 45.00758 * 17 16 15 36 36 H 0.96703 * 114.00236 * 300.00406 * 18 17 16 37 37 H 1.48500 * 110.00006 * 180.02562 * 19 17 16 38 38 H 1.48502 * 109.99920 * 301.32134 * 19 17 16 39 39 H 1.07998 * 122.54095 * 179.97438 * 20 16 15 40 40 H 1.07999 * 125.19809 * 180.02562 * 21 20 16 41 41 H 1.09006 * 113.61692 * 139.93923 * 23 9 8 42 42 H 1.09006 * 113.61630 * 270.75324 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9587 -0.6925 1.1995 5 6 1.9586 -0.6925 -1.1993 6 6 3.4834 -0.5845 -1.2638 7 1 3.8473 0.4156 -1.0284 8 6 4.2168 -1.7014 -0.4988 9 6 5.2172 -1.7340 -1.6664 10 1 6.0556 -1.0486 -1.5423 11 7 5.6384 -3.0863 -2.0406 12 16 7.2228 -3.5369 -1.8700 13 8 7.3011 -4.8936 -2.2856 14 8 8.0000 -2.4996 -2.4524 15 6 7.5862 -3.5229 -0.1460 16 6 7.4401 -4.5608 0.6791 17 6 6.9313 -5.9008 0.2139 18 8 5.5209 -5.8259 -0.0028 19 14 7.2927 -7.1872 1.5122 20 6 7.7906 -4.3135 1.9953 21 6 8.2219 -3.0749 2.2388 22 16 8.2045 -2.1407 0.7487 23 6 4.0891 -1.1739 -2.5486 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.5953 -1.7200 1.1996 28 1 3.0486 -0.6928 1.1993 29 1 1.5953 -0.1786 2.0895 30 1 1.5240 -0.2331 -2.0871 31 1 1.6703 -1.7428 -1.1556 32 1 3.6339 -2.6168 -0.3976 33 1 4.6555 -1.3715 0.4428 34 1 4.9901 -3.7164 -2.3922 35 1 7.4278 -6.1747 -0.7170 36 1 5.0141 -5.5862 0.7852 37 1 6.7964 -8.5135 1.0652 38 1 8.7538 -7.2525 1.7696 39 1 7.7203 -5.0662 2.7665 40 1 8.5375 -2.7039 3.2027 41 1 4.4246 -0.4186 -3.2594 42 1 3.4719 -1.9448 -3.0101 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607758_13652106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:33:52 Heat of formation + Delta-G solvation = 62.695128 kcal Electronic energy + Delta-G solvation = -26171.786642 eV Core-core repulsion = 22491.778288 eV Total energy + Delta-G solvation = -3680.008353 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.098 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.09793 -40.11270 -39.62622 -38.40248 -37.18620 -37.01917 -34.36367 -31.41881 -29.86407 -29.41044 -28.01513 -26.60269 -25.68650 -24.29298 -23.59684 -21.70049 -20.97531 -20.22091 -19.49820 -18.99428 -18.59478 -18.32754 -17.88429 -17.38720 -16.82618 -16.63876 -16.33045 -16.01804 -15.94181 -15.67860 -15.12613 -14.70601 -14.30814 -14.04804 -14.00925 -13.81405 -13.73718 -13.53281 -13.46098 -13.42397 -13.35538 -13.29762 -13.19484 -13.06868 -12.91419 -12.83629 -12.55807 -12.16444 -11.97660 -11.76468 -11.70345 -11.43444 -10.58686 -10.48628 -10.36411 -9.65466 -5.14204 -0.86681 -0.64311 0.28006 0.69576 1.10297 1.17767 1.25722 1.59480 1.94180 1.97457 2.54184 2.95879 3.01951 3.25774 3.29122 3.41978 3.49375 3.53239 3.53992 3.73428 3.81693 3.97707 4.07898 4.16464 4.19400 4.28392 4.30776 4.43776 4.45957 4.51072 4.56887 4.75101 4.76901 4.83270 4.85225 4.90116 4.91851 4.92709 4.94932 5.05259 5.11389 5.13360 5.48782 6.02984 6.76889 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.012871 B = 0.004766 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.840292 B = 5873.171210 C = 6312.093446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.369 5.369 3 H 0.438 0.562 4 C -0.060 4.060 5 C 0.010 3.990 6 C -0.118 4.118 7 H 0.133 0.867 8 C -0.152 4.152 9 C 0.092 3.908 10 H 0.103 0.897 11 N -1.079 6.079 12 S 2.716 3.284 13 O -0.986 6.986 14 O -0.996 6.996 15 C -0.793 4.793 16 C 0.015 3.985 17 C -0.092 4.092 18 O -0.530 6.530 19 Si 0.790 3.210 20 C -0.171 4.171 21 C -0.144 4.144 22 S 0.218 5.782 23 C -0.135 4.135 24 H 0.118 0.882 25 H 0.125 0.875 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.431 0.569 35 H 0.118 0.882 36 H 0.398 0.602 37 H -0.302 1.302 38 H -0.298 1.298 39 H 0.181 0.819 40 H 0.209 0.791 41 H 0.075 0.925 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.080 17.446 9.793 32.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 N 0.054 4.946 3 H 0.276 0.724 4 C -0.202 4.202 5 C -0.112 4.112 6 C -0.137 4.137 7 H 0.151 0.849 8 C -0.190 4.190 9 C -0.015 4.015 10 H 0.121 0.879 11 N -0.842 5.842 12 S 2.805 3.195 13 O -0.976 6.976 14 O -0.985 6.985 15 C -0.997 4.997 16 C -0.004 4.004 17 C -0.204 4.204 18 O -0.337 6.337 19 Si 0.696 3.304 20 C -0.199 4.199 21 C -0.281 4.281 22 S 0.485 5.515 23 C -0.176 4.176 24 H 0.137 0.863 25 H 0.143 0.857 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.137 0.863 33 H 0.117 0.883 34 H 0.270 0.730 35 H 0.135 0.865 36 H 0.248 0.752 37 H -0.230 1.230 38 H -0.225 1.225 39 H 0.197 0.803 40 H 0.225 0.775 41 H 0.093 0.907 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -24.463 17.751 8.408 31.372 hybrid contribution 0.437 -1.480 -0.096 1.547 sum -24.026 16.271 8.312 30.184 Atomic orbital electron populations 1.24105 0.75688 1.09434 1.09582 1.44827 1.15815 1.19356 1.14592 0.72431 1.24335 1.05987 1.02739 0.87104 1.23872 0.95088 1.03588 0.88628 1.22784 0.92645 1.01263 0.97040 0.84903 1.24009 0.97152 1.00203 0.97682 1.22786 0.98114 0.81379 0.99222 0.87940 1.55086 1.27293 1.22037 1.79823 1.00813 0.73802 0.72109 0.72743 1.93536 1.86500 1.36457 1.81134 1.93585 1.69988 1.59439 1.75507 1.35360 1.27565 1.07216 1.29513 1.19258 0.93409 0.94532 0.93178 1.25394 0.86416 0.99018 1.09567 1.86555 1.13900 1.92738 1.40544 0.94524 0.79574 0.75161 0.81114 1.20486 1.04813 0.98692 0.95954 1.26632 1.00715 0.97414 1.03371 1.84381 1.59880 1.09414 0.97863 1.23376 0.96107 1.01144 0.96924 0.86302 0.85699 0.85877 0.85879 0.85933 0.85575 0.83912 0.84306 0.86328 0.88279 0.72997 0.86460 0.75190 1.23016 1.22513 0.80250 0.77458 0.90656 0.87520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 3.01 9.19 127.69 1.17 4.19 16 2 N -0.37 25.10 0.66 -948.85 -0.62 24.48 16 3 H 0.44 -31.38 8.41 -89.69 -0.75 -32.13 16 4 C -0.06 3.88 8.57 127.69 1.09 4.98 16 5 C 0.01 -0.66 4.57 86.30 0.39 -0.26 16 6 C -0.12 6.47 3.30 -10.21 -0.03 6.43 16 7 H 0.13 -7.65 8.09 -2.39 -0.02 -7.66 16 8 C -0.15 7.44 5.70 31.18 0.18 7.62 16 9 C 0.09 -3.37 4.42 45.52 0.20 -3.17 16 10 H 0.10 -3.40 7.75 -2.39 -0.02 -3.41 16 11 N -1.08 30.55 5.79 -167.20 -0.97 29.58 16 12 S 2.72 -41.71 5.73 -56.49 -0.32 -42.04 16 13 O -0.99 7.04 14.92 -128.00 -1.91 5.13 16 14 O -1.00 7.87 17.41 -128.00 -2.23 5.65 16 15 C -0.79 15.68 6.55 66.72 0.44 16.12 16 16 C 0.02 -0.32 5.13 -20.92 -0.11 -0.43 16 17 C -0.09 1.70 1.97 71.24 0.14 1.84 16 18 O -0.53 12.95 12.88 -148.98 -1.92 11.03 16 19 Si 0.79 -15.02 30.25 68.60 2.08 -12.94 16 20 C -0.17 4.45 8.74 21.22 0.19 4.63 16 21 C -0.14 3.97 11.23 66.72 0.75 4.72 16 22 S 0.22 -5.16 23.21 -56.49 -1.31 -6.47 16 23 C -0.14 5.82 7.42 31.12 0.23 6.05 16 24 H 0.12 -7.61 8.14 -2.38 -0.02 -7.63 16 25 H 0.12 -8.07 8.14 -2.39 -0.02 -8.09 16 26 H 0.12 -7.95 8.11 -2.39 -0.02 -7.97 16 27 H 0.12 -7.96 8.11 -2.39 -0.02 -7.98 16 28 H 0.12 -7.83 5.13 -2.39 -0.01 -7.85 16 29 H 0.13 -8.20 8.14 -2.39 -0.02 -8.22 16 30 H 0.14 -9.09 8.09 -2.39 -0.02 -9.11 16 31 H 0.14 -8.81 7.80 -2.39 -0.02 -8.83 16 32 H 0.12 -6.11 7.91 -2.39 -0.02 -6.13 16 33 H 0.10 -5.03 7.19 -2.39 -0.02 -5.05 16 34 H 0.43 -13.42 8.93 -96.74 -0.86 -14.29 16 35 H 0.12 -1.25 5.65 -2.39 -0.01 -1.27 16 36 H 0.40 -14.40 8.70 -74.06 -0.64 -15.04 16 37 H -0.30 2.96 7.11 99.48 0.71 3.67 16 38 H -0.30 3.45 7.11 99.48 0.71 4.15 16 39 H 0.18 -5.54 5.73 -2.91 -0.02 -5.56 16 40 H 0.21 -6.94 8.06 -2.91 -0.02 -6.96 16 41 H 0.07 -2.92 8.14 -2.38 -0.02 -2.94 16 42 H 0.11 -4.68 8.10 -2.38 -0.02 -4.70 16 Total: 1.00 -92.14 356.21 -3.73 -95.87 By element: Atomic # 1 Polarization: -161.84 SS G_CDS: -1.16 Total: -163.00 kcal Atomic # 6 Polarization: 48.08 SS G_CDS: 4.64 Total: 52.72 kcal Atomic # 7 Polarization: 55.65 SS G_CDS: -1.59 Total: 54.06 kcal Atomic # 8 Polarization: 27.87 SS G_CDS: -6.06 Total: 21.81 kcal Atomic # 14 Polarization: -15.02 SS G_CDS: 2.08 Total: -12.94 kcal Atomic # 16 Polarization: -46.88 SS G_CDS: -1.63 Total: -48.51 kcal Total: -92.14 -3.73 -95.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607758_13652106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.563 kcal (2) G-P(sol) polarization free energy of solvation -92.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds