Wall clock time and date at job start Mon Mar 8 2021 10:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 H 1.00894 * 109.47180 * 2 1 4 4 C 1.46902 * 109.47142 * 119.99907 * 2 1 3 5 5 C 1.46906 * 109.46786 * 239.99526 * 2 1 3 6 6 C 1.53005 * 109.46721 * 174.99984 * 5 2 1 7 7 H 1.09001 * 112.90864 * 316.25750 * 6 5 2 8 8 C 1.53776 * 113.61330 * 87.50499 * 6 5 2 9 9 C 1.53778 * 87.08245 * 139.98092 * 8 6 5 10 10 H 1.09003 * 113.61516 * 89.11657 * 9 8 6 11 11 N 1.46499 * 113.69335 * 220.00830 * 9 8 6 12 12 S 1.65593 * 120.00120 * 222.84011 * 11 9 8 13 13 O 1.42098 * 106.40427 * 180.70613 * 12 11 9 14 14 O 1.42100 * 106.40500 * 313.62751 * 12 11 9 15 15 C 1.76198 * 107.21990 * 67.16884 * 12 11 9 16 16 C 1.33386 * 122.54377 * 163.84722 * 15 12 11 17 17 C 1.50702 * 125.20086 * 0.02562 * 16 15 12 18 18 O 1.42898 * 109.47275 * 46.05451 * 17 16 15 19 19 Si 1.86304 * 109.46950 * 166.05498 * 17 16 15 20 20 S 1.75884 * 109.59608 * 180.02562 * 16 15 12 21 21 C 1.75888 * 90.96991 * 0.02562 * 20 16 15 22 22 C 1.33388 * 109.59286 * 359.73278 * 21 20 16 23 23 C 1.53774 * 113.61449 * 185.00089 * 6 5 2 24 24 H 1.09007 * 109.47333 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47394 * 299.99981 * 1 2 3 26 26 H 1.09001 * 109.47506 * 60.00464 * 1 2 3 27 27 H 1.09007 * 109.46874 * 59.99881 * 4 2 1 28 28 H 1.08996 * 109.47215 * 179.97438 * 4 2 1 29 29 H 1.08995 * 109.46985 * 300.00358 * 4 2 1 30 30 H 1.08995 * 109.47105 * 55.00603 * 5 2 1 31 31 H 1.09003 * 109.47458 * 294.99986 * 5 2 1 32 32 H 1.09007 * 113.61432 * 254.52790 * 8 6 5 33 33 H 1.09000 * 113.61464 * 25.43381 * 8 6 5 34 34 H 0.97006 * 119.99767 * 42.84330 * 11 9 8 35 35 H 1.08997 * 109.46734 * 286.05340 * 17 16 15 36 36 H 0.96698 * 114.00385 * 66.04540 * 18 17 16 37 37 H 1.48493 * 110.00154 * 58.67922 * 19 17 16 38 38 H 1.48498 * 109.99602 * 180.02562 * 19 17 16 39 39 H 1.07999 * 125.19928 * 179.97438 * 21 20 16 40 40 H 1.08002 * 122.54099 * 180.24597 * 22 21 20 41 41 H 1.09004 * 113.61394 * 334.57310 * 23 6 5 42 42 H 1.09005 * 113.61665 * 105.38673 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9512 0.0000 4 6 1.9587 -0.6925 1.1995 5 6 1.9586 -0.6926 -1.1995 6 6 3.4835 -0.5847 -1.2639 7 1 3.8484 0.4149 -1.0277 8 6 4.2130 -1.7029 -0.5010 9 6 5.2159 -1.7360 -1.6662 10 1 6.0545 -1.0511 -1.5400 11 7 5.6371 -3.0878 -2.0423 12 16 7.2300 -3.3970 -2.3722 13 8 7.3088 -4.7737 -2.7156 14 8 7.6715 -2.3552 -3.2318 15 6 8.1212 -3.2088 -0.8639 16 6 9.3572 -3.6818 -0.6969 17 6 10.1516 -4.4240 -1.7404 18 8 10.0550 -3.7378 -2.9901 19 14 11.9373 -4.5107 -1.2161 20 16 9.9179 -3.3067 0.9274 21 6 8.3969 -2.5055 1.2997 22 6 7.5933 -2.5551 0.2362 23 6 4.0890 -1.1739 -2.5487 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.5953 -1.7202 1.1994 28 1 3.0486 -0.6929 1.1992 29 1 1.5953 -0.1787 2.0894 30 1 1.5240 -0.2331 -2.0871 31 1 1.6702 -1.7429 -1.1557 32 1 4.6500 -1.3748 0.4422 33 1 3.6282 -2.6175 -0.4022 34 1 4.9827 -3.8017 -2.0981 35 1 9.7553 -5.4336 -1.8487 36 1 10.4728 -2.8657 -2.9934 37 1 12.0483 -5.1941 0.0976 38 1 12.7315 -5.2399 -2.2372 39 1 8.1527 -2.0409 2.2435 40 1 6.6043 -2.1211 0.2347 41 1 3.4702 -1.9438 -3.0098 42 1 4.4246 -0.4188 -3.2595 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607758_14772022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:33:56 Heat of formation + Delta-G solvation = 95.888455 kcal Electronic energy + Delta-G solvation = -25840.764081 eV Core-core repulsion = 22162.195098 eV Total energy + Delta-G solvation = -3678.568983 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.098 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -44.57860 -41.67598 -40.49179 -38.92005 -38.48127 -37.54754 -35.90336 -32.71207 -32.16994 -31.97063 -28.63394 -28.38445 -28.13750 -25.72688 -25.35220 -22.98390 -22.63562 -21.76488 -21.26519 -20.28548 -20.11335 -19.83163 -19.29145 -18.85439 -18.54564 -18.15594 -17.70493 -17.36672 -16.89154 -16.75679 -16.43748 -16.31071 -16.17569 -16.06261 -15.95505 -15.67436 -15.53406 -15.41028 -15.17931 -15.09208 -14.89094 -14.83240 -14.65149 -13.85377 -13.82190 -13.72286 -13.59219 -13.51741 -13.36203 -13.28479 -12.84842 -12.43299 -11.87792 -11.73797 -11.07469 -10.71664 -5.91472 -1.61502 -1.50219 -1.37791 -0.54888 -0.23353 0.13775 0.30380 0.43357 0.48313 0.65599 0.77950 0.94661 1.16496 1.22856 1.33045 1.52513 1.61306 1.71264 1.76700 1.82210 1.90258 1.97263 2.03869 2.14777 2.19944 2.24758 2.27377 2.36537 2.49567 2.53759 2.70574 2.81650 2.88645 2.93138 3.06773 3.13748 3.19899 3.39062 3.52483 3.60965 3.75390 3.83260 4.13242 4.66952 5.57706 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.022081 B = 0.003700 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.767315 B = 7565.336421 C = 8483.792625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.386 5.386 3 H 0.427 0.573 4 C -0.056 4.056 5 C 0.001 3.999 6 C -0.145 4.145 7 H 0.120 0.880 8 C -0.164 4.164 9 C 0.129 3.871 10 H 0.126 0.874 11 N -1.109 6.109 12 S 2.714 3.286 13 O -0.942 6.942 14 O -0.935 6.935 15 C -0.668 4.668 16 C -0.094 4.094 17 C -0.074 4.074 18 O -0.529 6.529 19 Si 0.670 3.330 20 S 0.178 5.822 21 C -0.213 4.213 22 C -0.095 4.095 23 C -0.134 4.134 24 H 0.121 0.879 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.422 0.578 35 H 0.148 0.852 36 H 0.390 0.610 37 H -0.230 1.230 38 H -0.221 1.221 39 H 0.175 0.825 40 H 0.145 0.855 41 H 0.102 0.898 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.197 14.781 9.431 30.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 N 0.038 4.962 3 H 0.262 0.738 4 C -0.198 4.198 5 C -0.120 4.120 6 C -0.165 4.165 7 H 0.138 0.862 8 C -0.203 4.203 9 C 0.021 3.979 10 H 0.144 0.856 11 N -0.867 5.867 12 S 2.800 3.200 13 O -0.932 6.932 14 O -0.925 6.925 15 C -0.766 4.766 16 C -0.215 4.215 17 C -0.186 4.186 18 O -0.335 6.335 19 Si 0.567 3.433 20 S 0.442 5.558 21 C -0.349 4.349 22 C -0.123 4.123 23 C -0.175 4.175 24 H 0.140 0.860 25 H 0.143 0.857 26 H 0.142 0.858 27 H 0.140 0.860 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.107 0.893 33 H 0.123 0.877 34 H 0.257 0.743 35 H 0.165 0.835 36 H 0.239 0.761 37 H -0.154 1.154 38 H -0.143 1.143 39 H 0.192 0.808 40 H 0.162 0.838 41 H 0.121 0.879 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -23.070 13.096 9.543 28.192 hybrid contribution -2.036 0.216 0.188 2.056 sum -25.105 13.312 9.731 30.036 Atomic orbital electron populations 1.24147 0.75591 1.09634 1.09641 1.45091 1.16252 1.18926 1.15881 0.73766 1.24314 1.06243 1.02453 0.86796 1.24101 0.98056 1.02547 0.87313 1.22990 0.90180 1.01512 1.01792 0.86242 1.23986 0.98738 0.98734 0.98830 1.22203 0.97265 0.83874 0.94608 0.85610 1.55777 1.28014 1.16295 1.86634 1.01729 0.71476 0.74018 0.72820 1.93624 1.85048 1.33104 1.81375 1.93617 1.79650 1.58523 1.60709 1.29804 1.08037 1.15386 1.23396 1.25090 0.96681 0.99574 1.00166 1.25111 1.10998 0.98127 0.84383 1.86590 1.81407 1.36052 1.29467 0.94905 0.74722 0.91196 0.82522 1.84764 1.15788 1.49826 1.05395 1.25921 0.98127 1.07097 1.03710 1.19629 1.00897 1.00715 0.91065 1.23469 0.97021 1.01446 0.95517 0.86001 0.85710 0.85773 0.85982 0.85564 0.85818 0.84728 0.85065 0.89254 0.87748 0.74321 0.83483 0.76061 1.15398 1.14334 0.80803 0.83752 0.87943 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 1.56 9.19 60.06 0.55 2.12 16 2 N -0.39 12.96 0.66 -251.25 -0.17 12.80 16 3 H 0.43 -15.08 8.41 -39.29 -0.33 -15.41 16 4 C -0.06 1.81 8.57 60.07 0.51 2.32 16 5 C 0.00 -0.04 4.57 -3.82 -0.02 -0.06 16 6 C -0.15 4.00 3.31 -89.81 -0.30 3.70 16 7 H 0.12 -3.44 8.10 -51.93 -0.42 -3.86 16 8 C -0.16 4.11 5.08 -25.92 -0.13 3.98 16 9 C 0.13 -2.56 2.71 -67.12 -0.18 -2.74 16 10 H 0.13 -2.42 7.49 -51.93 -0.39 -2.81 16 11 N -1.11 17.63 5.56 -4.20 -0.02 17.61 16 12 S 2.71 -25.94 4.27 -107.50 -0.46 -26.40 16 13 O -0.94 4.89 17.08 -58.48 -1.00 3.89 16 14 O -0.94 6.46 16.81 -63.65 -1.07 5.39 16 15 C -0.67 6.84 5.72 -41.21 -0.24 6.60 16 16 C -0.09 0.84 5.78 -36.00 -0.21 0.63 16 17 C -0.07 0.58 2.17 36.01 0.08 0.66 16 18 O -0.53 3.73 10.47 -51.35 -0.54 3.19 16 19 Si 0.67 -5.98 30.97 -169.99 -5.26 -11.24 16 20 S 0.18 -1.84 20.71 -107.50 -2.23 -4.07 16 21 C -0.21 2.70 11.23 29.04 0.33 3.03 16 22 C -0.09 1.26 9.38 -41.21 -0.39 0.87 16 23 C -0.13 2.98 7.44 -25.92 -0.19 2.79 16 24 H 0.12 -3.87 8.14 -51.92 -0.42 -4.29 16 25 H 0.12 -4.01 8.14 -51.93 -0.42 -4.43 16 26 H 0.12 -3.98 8.11 -51.93 -0.42 -4.40 16 27 H 0.12 -3.87 8.11 -51.92 -0.42 -4.29 16 28 H 0.13 -3.99 5.13 -51.93 -0.27 -4.26 16 29 H 0.12 -3.97 8.14 -51.93 -0.42 -4.39 16 30 H 0.13 -4.21 8.09 -51.93 -0.42 -4.63 16 31 H 0.13 -4.08 7.79 -51.93 -0.40 -4.49 16 32 H 0.09 -2.33 6.52 -51.93 -0.34 -2.67 16 33 H 0.10 -2.70 7.90 -51.93 -0.41 -3.11 16 34 H 0.42 -7.45 8.96 -34.47 -0.31 -7.76 16 35 H 0.15 -1.06 7.85 -51.93 -0.41 -1.46 16 36 H 0.39 -4.29 8.59 45.56 0.39 -3.90 16 37 H -0.23 1.72 7.11 56.52 0.40 2.12 16 38 H -0.22 1.31 7.11 56.52 0.40 1.71 16 39 H 0.17 -2.68 8.06 -52.49 -0.42 -3.10 16 40 H 0.15 -2.58 4.58 -52.49 -0.24 -2.82 16 41 H 0.10 -2.28 8.10 -51.93 -0.42 -2.70 16 42 H 0.10 -1.97 8.14 -51.93 -0.42 -2.40 16 LS Contribution 350.23 15.07 5.28 5.28 Total: 1.00 -41.24 350.23 -11.77 -53.00 By element: Atomic # 1 Polarization: -77.24 SS G_CDS: -6.12 Total: -83.36 kcal Atomic # 6 Polarization: 24.09 SS G_CDS: -0.18 Total: 23.91 kcal Atomic # 7 Polarization: 30.59 SS G_CDS: -0.19 Total: 30.41 kcal Atomic # 8 Polarization: 15.08 SS G_CDS: -2.61 Total: 12.47 kcal Atomic # 14 Polarization: -5.98 SS G_CDS: -5.26 Total: -11.24 kcal Atomic # 16 Polarization: -27.78 SS G_CDS: -2.68 Total: -30.47 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -41.24 -11.77 -53.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607758_14772022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.890 kcal (2) G-P(sol) polarization free energy of solvation -41.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds