Wall clock time and date at job start Mon Mar 8 2021 10:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 H 1.00894 * 109.47180 * 2 1 4 4 C 1.46902 * 109.47142 * 119.99907 * 2 1 3 5 5 C 1.46906 * 109.46786 * 239.99526 * 2 1 3 6 6 C 1.53005 * 109.46721 * 174.99984 * 5 2 1 7 7 H 1.09001 * 112.90864 * 316.25750 * 6 5 2 8 8 C 1.53776 * 113.61330 * 87.50499 * 6 5 2 9 9 C 1.53778 * 87.08245 * 139.98092 * 8 6 5 10 10 H 1.09003 * 113.61516 * 89.11657 * 9 8 6 11 11 N 1.46499 * 113.69335 * 220.00830 * 9 8 6 12 12 S 1.65593 * 120.00120 * 222.84011 * 11 9 8 13 13 O 1.42098 * 106.40427 * 180.70613 * 12 11 9 14 14 O 1.42100 * 106.40500 * 313.62751 * 12 11 9 15 15 C 1.76198 * 107.21990 * 67.16884 * 12 11 9 16 16 C 1.33386 * 122.54377 * 163.84722 * 15 12 11 17 17 C 1.50702 * 125.20086 * 0.02562 * 16 15 12 18 18 O 1.42898 * 109.47275 * 46.05451 * 17 16 15 19 19 Si 1.86304 * 109.46950 * 166.05498 * 17 16 15 20 20 S 1.75884 * 109.59608 * 180.02562 * 16 15 12 21 21 C 1.75888 * 90.96991 * 0.02562 * 20 16 15 22 22 C 1.33388 * 109.59286 * 359.73278 * 21 20 16 23 23 C 1.53774 * 113.61449 * 185.00089 * 6 5 2 24 24 H 1.09007 * 109.47333 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47394 * 299.99981 * 1 2 3 26 26 H 1.09001 * 109.47506 * 60.00464 * 1 2 3 27 27 H 1.09007 * 109.46874 * 59.99881 * 4 2 1 28 28 H 1.08996 * 109.47215 * 179.97438 * 4 2 1 29 29 H 1.08995 * 109.46985 * 300.00358 * 4 2 1 30 30 H 1.08995 * 109.47105 * 55.00603 * 5 2 1 31 31 H 1.09003 * 109.47458 * 294.99986 * 5 2 1 32 32 H 1.09007 * 113.61432 * 254.52790 * 8 6 5 33 33 H 1.09000 * 113.61464 * 25.43381 * 8 6 5 34 34 H 0.97006 * 119.99767 * 42.84330 * 11 9 8 35 35 H 1.08997 * 109.46734 * 286.05340 * 17 16 15 36 36 H 0.96698 * 114.00385 * 66.04540 * 18 17 16 37 37 H 1.48493 * 110.00154 * 58.67922 * 19 17 16 38 38 H 1.48498 * 109.99602 * 180.02562 * 19 17 16 39 39 H 1.07999 * 125.19928 * 179.97438 * 21 20 16 40 40 H 1.08002 * 122.54099 * 180.24597 * 22 21 20 41 41 H 1.09004 * 113.61394 * 334.57310 * 23 6 5 42 42 H 1.09005 * 113.61665 * 105.38673 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9512 0.0000 4 6 1.9587 -0.6925 1.1995 5 6 1.9586 -0.6926 -1.1995 6 6 3.4835 -0.5847 -1.2639 7 1 3.8484 0.4149 -1.0277 8 6 4.2130 -1.7029 -0.5010 9 6 5.2159 -1.7360 -1.6662 10 1 6.0545 -1.0511 -1.5400 11 7 5.6371 -3.0878 -2.0423 12 16 7.2300 -3.3970 -2.3722 13 8 7.3088 -4.7737 -2.7156 14 8 7.6715 -2.3552 -3.2318 15 6 8.1212 -3.2088 -0.8639 16 6 9.3572 -3.6818 -0.6969 17 6 10.1516 -4.4240 -1.7404 18 8 10.0550 -3.7378 -2.9901 19 14 11.9373 -4.5107 -1.2161 20 16 9.9179 -3.3067 0.9274 21 6 8.3969 -2.5055 1.2997 22 6 7.5933 -2.5551 0.2362 23 6 4.0890 -1.1739 -2.5487 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.5953 -1.7202 1.1994 28 1 3.0486 -0.6929 1.1992 29 1 1.5953 -0.1787 2.0894 30 1 1.5240 -0.2331 -2.0871 31 1 1.6702 -1.7429 -1.1557 32 1 4.6500 -1.3748 0.4422 33 1 3.6282 -2.6175 -0.4022 34 1 4.9827 -3.8017 -2.0981 35 1 9.7553 -5.4336 -1.8487 36 1 10.4728 -2.8657 -2.9934 37 1 12.0483 -5.1941 0.0976 38 1 12.7315 -5.2399 -2.2372 39 1 8.1527 -2.0409 2.2435 40 1 6.6043 -2.1211 0.2347 41 1 3.4702 -1.9438 -3.0098 42 1 4.4246 -0.4188 -3.2595 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607758_14772022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:33:56 Heat of formation + Delta-G solvation = 63.628710 kcal Electronic energy + Delta-G solvation = -25842.162969 eV Core-core repulsion = 22162.195098 eV Total energy + Delta-G solvation = -3679.967870 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.098 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.12848 -39.79085 -39.60263 -38.25743 -37.73984 -36.90033 -34.42633 -31.86993 -29.88338 -29.42848 -27.61100 -26.65753 -25.72086 -24.54697 -23.61124 -21.73295 -21.14594 -20.40799 -19.36880 -18.98363 -18.48696 -18.04912 -17.80303 -17.45899 -17.13552 -16.91363 -16.61180 -16.04201 -15.94489 -15.56360 -15.22184 -14.61366 -14.40663 -14.13466 -14.07482 -13.98366 -13.75495 -13.57128 -13.44095 -13.38830 -13.25779 -13.22166 -13.16586 -13.06913 -12.92530 -12.82611 -12.66486 -12.23185 -11.92932 -11.66500 -11.57043 -11.53942 -11.06947 -10.46461 -10.21796 -9.82834 -5.27792 -0.78306 -0.54515 0.30678 0.62082 0.98711 1.08912 1.13744 1.41313 1.76324 1.97377 2.66405 2.94705 3.00229 3.11426 3.24056 3.25278 3.39286 3.50610 3.55837 3.73597 3.82315 3.93332 4.03742 4.07255 4.14812 4.22300 4.26721 4.29261 4.41934 4.44225 4.55188 4.60330 4.75371 4.80328 4.82110 4.84365 4.89523 4.90197 4.94303 5.03262 5.13084 5.16570 5.47769 6.00694 6.36332 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.022081 B = 0.003700 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.767315 B = 7565.336421 C = 8483.792625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.368 5.368 3 H 0.439 0.561 4 C -0.061 4.061 5 C 0.009 3.991 6 C -0.117 4.117 7 H 0.139 0.861 8 C -0.153 4.153 9 C 0.090 3.910 10 H 0.117 0.883 11 N -1.093 6.093 12 S 2.719 3.281 13 O -0.999 6.999 14 O -0.974 6.974 15 C -0.666 4.666 16 C -0.124 4.124 17 C -0.086 4.086 18 O -0.550 6.550 19 Si 0.747 3.253 20 S 0.155 5.845 21 C -0.199 4.199 22 C -0.094 4.094 23 C -0.148 4.148 24 H 0.117 0.883 25 H 0.125 0.875 26 H 0.123 0.877 27 H 0.120 0.880 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.142 0.858 31 H 0.137 0.863 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.430 0.570 35 H 0.128 0.872 36 H 0.403 0.597 37 H -0.247 1.247 38 H -0.268 1.268 39 H 0.210 0.790 40 H 0.190 0.810 41 H 0.101 0.899 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.030 16.946 11.923 34.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 N 0.055 4.945 3 H 0.277 0.723 4 C -0.203 4.203 5 C -0.114 4.114 6 C -0.137 4.137 7 H 0.156 0.844 8 C -0.192 4.192 9 C -0.017 4.017 10 H 0.135 0.865 11 N -0.856 5.856 12 S 2.807 3.193 13 O -0.989 6.989 14 O -0.963 6.963 15 C -0.767 4.767 16 C -0.244 4.244 17 C -0.197 4.197 18 O -0.359 6.359 19 Si 0.647 3.353 20 S 0.419 5.581 21 C -0.335 4.335 22 C -0.121 4.121 23 C -0.188 4.188 24 H 0.136 0.864 25 H 0.143 0.857 26 H 0.141 0.859 27 H 0.138 0.862 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.160 0.840 31 H 0.155 0.845 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.268 0.732 35 H 0.145 0.855 36 H 0.254 0.746 37 H -0.172 1.172 38 H -0.193 1.193 39 H 0.226 0.774 40 H 0.207 0.793 41 H 0.120 0.880 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -25.921 15.292 12.030 32.411 hybrid contribution -1.248 -0.411 -0.594 1.442 sum -27.169 14.881 11.435 33.021 Atomic orbital electron populations 1.24103 0.75834 1.09349 1.09599 1.44818 1.15722 1.19395 1.14559 0.72328 1.24346 1.06192 1.02603 0.87122 1.23890 0.95379 1.03481 0.88606 1.22773 0.92449 1.01461 0.96980 0.84367 1.24034 0.97040 1.00353 0.97765 1.22889 0.98463 0.81461 0.98840 0.86514 1.55329 1.25109 1.18484 1.86697 1.01048 0.72919 0.72285 0.73062 1.93542 1.86544 1.35967 1.82811 1.93560 1.81260 1.58988 1.62536 1.29889 1.07630 1.15239 1.23896 1.24983 0.97515 1.01229 1.00722 1.25182 1.12272 0.97594 0.84635 1.86548 1.81926 1.37057 1.30362 0.94011 0.72241 0.89689 0.79341 1.84769 1.18148 1.50658 1.04552 1.26344 0.96105 1.05998 1.05043 1.20059 1.02712 0.99803 0.89499 1.23492 0.96878 1.01217 0.97204 0.86449 0.85686 0.85871 0.86152 0.85518 0.85622 0.84021 0.84485 0.87070 0.86459 0.73183 0.85525 0.74597 1.17200 1.19343 0.77352 0.79277 0.88049 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 3.05 9.19 127.69 1.17 4.23 16 2 N -0.37 25.19 0.66 -948.80 -0.62 24.56 16 3 H 0.44 -31.73 8.41 -89.70 -0.75 -32.48 16 4 C -0.06 3.98 8.57 127.69 1.09 5.07 16 5 C 0.01 -0.55 4.57 86.30 0.39 -0.15 16 6 C -0.12 6.58 3.31 -10.27 -0.03 6.54 16 7 H 0.14 -8.22 8.10 -2.39 -0.02 -8.24 16 8 C -0.15 7.90 5.08 31.12 0.16 8.06 16 9 C 0.09 -3.50 2.71 45.52 0.12 -3.38 16 10 H 0.12 -4.36 7.49 -2.39 -0.02 -4.38 16 11 N -1.09 32.61 5.56 -167.20 -0.93 31.68 16 12 S 2.72 -42.52 4.27 -56.49 -0.24 -42.76 16 13 O -1.00 5.67 17.08 -126.75 -2.16 3.50 16 14 O -0.97 9.48 16.81 -121.81 -2.05 7.43 16 15 C -0.67 12.18 5.72 21.22 0.12 12.30 16 16 C -0.12 1.85 5.78 24.59 0.14 1.99 16 17 C -0.09 0.98 2.17 71.24 0.15 1.14 16 18 O -0.55 5.20 10.47 -133.57 -1.40 3.80 16 19 Si 0.75 -10.68 30.97 68.60 2.12 -8.55 16 20 S 0.15 -2.98 20.71 -56.49 -1.17 -4.15 16 21 C -0.20 5.25 11.23 66.72 0.75 6.00 16 22 C -0.09 2.52 9.38 21.22 0.20 2.72 16 23 C -0.15 6.39 7.44 31.12 0.23 6.62 16 24 H 0.12 -7.48 8.14 -2.38 -0.02 -7.50 16 25 H 0.12 -8.07 8.14 -2.38 -0.02 -8.09 16 26 H 0.12 -7.94 8.11 -2.39 -0.02 -7.96 16 27 H 0.12 -7.78 8.11 -2.38 -0.02 -7.79 16 28 H 0.13 -8.30 5.13 -2.39 -0.01 -8.31 16 29 H 0.13 -8.20 8.14 -2.39 -0.02 -8.22 16 30 H 0.14 -9.02 8.09 -2.39 -0.02 -9.03 16 31 H 0.14 -8.71 7.79 -2.39 -0.02 -8.73 16 32 H 0.11 -6.15 6.52 -2.38 -0.02 -6.17 16 33 H 0.12 -6.28 7.90 -2.39 -0.02 -6.30 16 34 H 0.43 -14.39 8.96 -96.74 -0.87 -15.26 16 35 H 0.13 -1.10 7.85 -2.39 -0.02 -1.12 16 36 H 0.40 -7.11 8.59 -74.06 -0.64 -7.74 16 37 H -0.25 2.95 7.11 99.48 0.71 3.66 16 38 H -0.27 1.93 7.11 99.48 0.71 2.64 16 39 H 0.21 -7.02 8.06 -2.91 -0.02 -7.04 16 40 H 0.19 -7.07 4.58 -2.91 -0.01 -7.09 16 41 H 0.10 -4.38 8.10 -2.39 -0.02 -4.40 16 42 H 0.07 -2.82 8.14 -2.38 -0.02 -2.84 16 Total: 1.00 -92.65 350.23 -3.10 -95.75 By element: Atomic # 1 Polarization: -161.24 SS G_CDS: -1.16 Total: -162.39 kcal Atomic # 6 Polarization: 46.62 SS G_CDS: 4.51 Total: 51.13 kcal Atomic # 7 Polarization: 57.80 SS G_CDS: -1.55 Total: 56.25 kcal Atomic # 8 Polarization: 20.35 SS G_CDS: -5.61 Total: 14.73 kcal Atomic # 14 Polarization: -10.68 SS G_CDS: 2.12 Total: -8.55 kcal Atomic # 16 Polarization: -45.50 SS G_CDS: -1.41 Total: -46.91 kcal Total: -92.65 -3.10 -95.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607758_14772022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.375 kcal (2) G-P(sol) polarization free energy of solvation -92.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds