Wall clock time and date at job start Mon Mar 8 2021 10:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 H 1.00895 * 109.46856 * 2 1 4 4 C 1.46896 * 109.47137 * 120.00167 * 2 1 3 5 5 C 1.46900 * 109.46837 * 239.99791 * 2 1 3 6 6 C 1.53005 * 109.47141 * 65.00317 * 5 2 1 7 7 H 1.09003 * 112.84903 * 43.80248 * 6 5 2 8 8 C 1.53778 * 113.61621 * 174.99787 * 6 5 2 9 9 C 1.53781 * 87.08353 * 140.06536 * 8 6 5 10 10 H 1.08999 * 113.61397 * 89.19485 * 9 8 6 11 11 N 1.46502 * 113.61382 * 220.02059 * 9 8 6 12 12 S 1.65598 * 119.99565 * 213.46782 * 11 9 8 13 13 O 1.42104 * 106.40458 * 311.45951 * 12 11 9 14 14 O 1.42102 * 106.40035 * 178.54223 * 12 11 9 15 15 C 1.76199 * 107.21932 * 65.00478 * 12 11 9 16 16 C 1.33380 * 122.54262 * 89.96888 * 15 12 11 17 17 S 1.75887 * 109.59348 * 179.97438 * 16 15 12 18 18 C 1.75884 * 90.97226 * 0.02562 * 17 16 15 19 19 C 1.50699 * 125.20431 * 179.97438 * 18 17 16 20 20 O 1.42894 * 109.47188 * 245.01827 * 19 18 17 21 21 Si 1.86298 * 109.46950 * 5.02501 * 19 18 17 22 22 C 1.33387 * 109.59055 * 0.22211 * 18 17 16 23 23 C 1.53781 * 87.16994 * 334.61006 * 9 8 6 24 24 H 1.08995 * 109.47412 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46846 * 300.00230 * 1 2 3 26 26 H 1.09003 * 109.46686 * 59.99638 * 1 2 3 27 27 H 1.08995 * 109.47359 * 180.02562 * 4 2 1 28 28 H 1.08999 * 109.46924 * 300.00341 * 4 2 1 29 29 H 1.09004 * 109.47020 * 59.99800 * 4 2 1 30 30 H 1.08994 * 109.47345 * 305.00149 * 5 2 1 31 31 H 1.09001 * 109.46906 * 184.99998 * 5 2 1 32 32 H 1.09000 * 113.61105 * 25.51506 * 8 6 5 33 33 H 1.09001 * 113.61228 * 254.61601 * 8 6 5 34 34 H 0.96994 * 119.99867 * 33.46656 * 11 9 8 35 35 H 1.08003 * 125.20514 * 0.02752 * 16 15 12 36 36 H 1.09006 * 109.46662 * 125.02096 * 19 18 17 37 37 H 0.96709 * 113.99337 * 60.00344 * 20 19 18 38 38 H 1.48506 * 109.99834 * 180.02562 * 21 19 18 39 39 H 1.48502 * 110.00011 * 301.31529 * 21 19 18 40 40 H 1.08002 * 122.53824 * 179.74900 * 22 18 17 41 41 H 1.09005 * 113.61499 * 139.93789 * 23 9 8 42 42 H 1.08999 * 113.61911 * 270.83927 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9587 -0.6925 1.1994 5 6 1.9587 -0.6926 -1.1994 6 6 1.5539 0.0977 -2.4456 7 1 1.7120 1.1706 -2.3362 8 6 2.1234 -0.4788 -3.7525 9 6 0.7630 -0.1591 -4.3943 10 1 0.7053 0.8431 -4.8189 11 7 0.2907 -1.1955 -5.3157 12 16 -0.5950 -0.7755 -6.6504 13 8 -1.6131 0.1053 -6.1956 14 8 -0.8668 -1.9834 -7.3479 15 6 0.4565 0.1766 -7.6956 16 6 1.2207 -0.3753 -8.6392 17 16 2.1252 0.8805 -9.4750 18 6 1.3935 2.1211 -8.4655 19 6 1.6745 3.5984 -8.5637 20 8 2.3083 4.0436 -7.3629 21 14 2.7967 3.9219 -10.0152 22 6 0.5559 1.5538 -7.5962 23 6 0.1585 -0.2665 -2.9843 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.0487 -0.6921 1.1996 28 1 1.5953 -0.1787 2.0894 29 1 1.5953 -1.7202 1.1994 30 1 1.5240 -1.6910 -1.2453 31 1 3.0450 -0.7708 -1.1558 32 1 2.3418 -1.5455 -3.7005 33 1 2.9479 0.1035 -4.1638 34 1 0.4968 -2.1276 -5.1440 35 1 1.2751 -1.4317 -8.8574 36 1 0.7375 4.1381 -8.7015 37 1 3.1498 3.6048 -7.1764 38 1 3.0820 5.3753 -10.1226 39 1 4.0651 3.1664 -9.8548 40 1 -0.0045 2.1259 -6.8715 41 1 -0.6012 0.4872 -2.7764 42 1 -0.1614 -1.2749 -2.7219 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607758_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:34:00 Heat of formation + Delta-G solvation = 90.826815 kcal Electronic energy + Delta-G solvation = -25295.583041 eV Core-core repulsion = 21616.794570 eV Total energy + Delta-G solvation = -3678.788472 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.098 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -44.54082 -41.59996 -40.40469 -39.18392 -38.53201 -37.82263 -35.91349 -32.73184 -32.13979 -31.95143 -28.55972 -28.15211 -28.05399 -25.88702 -25.65761 -22.97564 -22.36797 -21.68061 -21.21794 -20.27984 -20.14700 -19.80101 -19.54380 -18.82943 -18.68072 -18.27549 -17.95571 -17.26818 -17.06553 -16.81405 -16.42794 -16.31092 -16.05243 -15.92199 -15.84335 -15.61856 -15.54068 -15.33399 -15.17399 -15.08790 -14.99026 -14.78898 -14.64014 -14.10159 -14.00735 -13.80893 -13.78543 -13.60634 -13.30762 -13.22007 -13.17494 -12.41171 -11.91971 -11.64746 -11.13650 -10.74473 -5.85429 -1.75544 -1.47833 -1.36631 -0.55446 -0.27390 0.07162 0.34847 0.46177 0.51237 0.68189 0.71153 0.96835 1.11652 1.24880 1.35527 1.57932 1.64209 1.68323 1.76138 1.82666 1.92194 1.97149 2.04890 2.14840 2.21797 2.27590 2.28734 2.34157 2.38862 2.58429 2.69265 2.90538 2.93874 2.96633 3.01970 3.15148 3.25561 3.32008 3.60790 3.64943 3.75161 3.98908 4.15759 4.61549 5.36274 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.013679 B = 0.003796 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.420480 B = 7373.658495 C = 8633.683559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.386 5.386 3 H 0.427 0.573 4 C -0.048 4.048 5 C 0.002 3.998 6 C -0.147 4.147 7 H 0.118 0.882 8 C -0.131 4.131 9 C 0.135 3.865 10 H 0.122 0.878 11 N -1.105 6.105 12 S 2.706 3.294 13 O -0.945 6.945 14 O -0.948 6.948 15 C -0.692 4.692 16 C -0.084 4.084 17 S 0.176 5.824 18 C -0.224 4.224 19 C -0.034 4.034 20 O -0.523 6.523 21 Si 0.651 3.349 22 C -0.051 4.051 23 C -0.161 4.161 24 H 0.122 0.878 25 H 0.124 0.876 26 H 0.128 0.872 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.422 0.578 35 H 0.187 0.813 36 H 0.133 0.867 37 H 0.375 0.625 38 H -0.230 1.230 39 H -0.238 1.238 40 H 0.155 0.845 41 H 0.092 0.908 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.986 -3.899 26.253 27.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 N 0.039 4.961 3 H 0.262 0.738 4 C -0.190 4.190 5 C -0.119 4.119 6 C -0.166 4.166 7 H 0.136 0.864 8 C -0.171 4.171 9 C 0.027 3.973 10 H 0.139 0.861 11 N -0.863 5.863 12 S 2.793 3.207 13 O -0.934 6.934 14 O -0.938 6.938 15 C -0.792 4.792 16 C -0.223 4.223 17 S 0.441 5.559 18 C -0.342 4.342 19 C -0.147 4.147 20 O -0.329 6.329 21 Si 0.549 3.451 22 C -0.080 4.080 23 C -0.200 4.200 24 H 0.141 0.859 25 H 0.142 0.858 26 H 0.146 0.854 27 H 0.141 0.859 28 H 0.143 0.857 29 H 0.140 0.860 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.120 0.880 33 H 0.110 0.890 34 H 0.257 0.743 35 H 0.204 0.796 36 H 0.150 0.850 37 H 0.223 0.777 38 H -0.152 1.152 39 H -0.162 1.162 40 H 0.173 0.827 41 H 0.111 0.889 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.298 -3.462 24.585 25.614 hybrid contribution 0.365 -0.050 1.864 1.900 sum 6.663 -3.512 26.449 27.501 Atomic orbital electron populations 1.24340 0.75847 1.09786 1.09892 1.45082 1.16507 1.18971 1.15584 0.73784 1.24139 1.05619 1.02478 0.86751 1.24070 1.05090 0.99800 0.82966 1.23027 0.99712 1.01114 0.92760 0.86368 1.23397 0.98189 1.03088 0.92398 1.22109 0.94013 0.92348 0.88871 0.86054 1.55681 1.74203 1.15878 1.40508 1.01794 0.73028 0.73422 0.72474 1.93628 1.52268 1.67187 1.80363 1.93655 1.82842 1.44742 1.72525 1.29922 1.22494 1.07680 1.19102 1.25980 0.95815 1.04694 0.95829 1.84715 1.40430 0.96084 1.34717 1.25076 1.05648 1.00369 1.03067 1.24404 1.05129 0.88868 0.96263 1.86648 1.39364 1.66028 1.40833 0.94883 0.81387 0.85368 0.83491 1.19576 0.97486 0.91125 0.99817 1.23957 0.95243 1.04079 0.96718 0.85950 0.85777 0.85385 0.85856 0.85699 0.85996 0.85096 0.84921 0.88002 0.88989 0.74274 0.79618 0.84984 0.77708 1.15224 1.16217 0.82746 0.88937 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 1.77 8.57 60.07 0.51 2.29 16 2 N -0.39 12.75 0.66 -251.26 -0.17 12.59 16 3 H 0.43 -14.85 8.40 -39.29 -0.33 -15.18 16 4 C -0.05 1.54 9.19 60.06 0.55 2.09 16 5 C 0.00 -0.07 4.57 -3.82 -0.02 -0.09 16 6 C -0.15 3.99 3.30 -89.72 -0.30 3.70 16 7 H 0.12 -3.33 8.10 -51.93 -0.42 -3.75 16 8 C -0.13 3.05 7.42 -25.92 -0.19 2.85 16 9 C 0.13 -2.71 4.34 -67.12 -0.29 -3.00 16 10 H 0.12 -2.36 7.93 -51.93 -0.41 -2.77 16 11 N -1.11 18.83 5.79 -4.20 -0.02 18.81 16 12 S 2.71 -30.81 5.74 -107.50 -0.62 -31.43 16 13 O -0.94 7.88 17.40 -57.17 -0.99 6.89 16 14 O -0.95 7.05 17.64 -57.17 -1.01 6.04 16 15 C -0.69 7.76 5.86 -41.21 -0.24 7.51 16 16 C -0.08 0.94 10.70 29.03 0.31 1.25 16 17 S 0.18 -1.91 20.60 -107.50 -2.21 -4.12 16 18 C -0.22 2.40 5.70 -36.00 -0.21 2.19 16 19 C -0.03 0.36 2.96 36.01 0.11 0.47 16 20 O -0.52 5.45 12.88 -35.23 -0.45 5.00 16 21 Si 0.65 -6.42 30.98 -169.99 -5.27 -11.69 16 22 C -0.05 0.56 9.46 -41.21 -0.39 0.17 16 23 C -0.16 3.81 5.70 -25.83 -0.15 3.66 16 24 H 0.12 -3.77 8.11 -51.93 -0.42 -4.19 16 25 H 0.12 -3.87 8.14 -51.93 -0.42 -4.29 16 26 H 0.13 -3.86 5.13 -51.93 -0.27 -4.13 16 27 H 0.12 -3.93 8.11 -51.93 -0.42 -4.35 16 28 H 0.12 -3.96 8.14 -51.93 -0.42 -4.38 16 29 H 0.12 -3.83 8.14 -51.93 -0.42 -4.25 16 30 H 0.13 -4.04 7.80 -51.93 -0.41 -4.44 16 31 H 0.13 -4.15 8.09 -51.93 -0.42 -4.57 16 32 H 0.10 -2.41 8.10 -51.93 -0.42 -2.83 16 33 H 0.09 -2.04 8.14 -51.93 -0.42 -2.46 16 34 H 0.42 -7.94 8.93 -34.47 -0.31 -8.25 16 35 H 0.19 -2.38 8.00 -52.48 -0.42 -2.80 16 36 H 0.13 -1.45 7.96 -51.93 -0.41 -1.86 16 37 H 0.38 -5.14 8.70 45.56 0.40 -4.74 16 38 H -0.23 1.51 7.11 56.52 0.40 1.91 16 39 H -0.24 2.05 7.11 56.52 0.40 2.45 16 40 H 0.16 -1.84 7.97 -52.49 -0.42 -2.26 16 41 H 0.09 -2.16 7.20 -51.93 -0.37 -2.53 16 42 H 0.10 -2.48 7.91 -51.93 -0.41 -2.89 16 LS Contribution 362.71 15.07 5.47 5.47 Total: 1.00 -40.01 362.71 -11.93 -51.94 By element: Atomic # 1 Polarization: -76.23 SS G_CDS: -6.35 Total: -82.59 kcal Atomic # 6 Polarization: 23.40 SS G_CDS: -0.30 Total: 23.10 kcal Atomic # 7 Polarization: 31.59 SS G_CDS: -0.19 Total: 31.40 kcal Atomic # 8 Polarization: 20.38 SS G_CDS: -2.46 Total: 17.92 kcal Atomic # 14 Polarization: -6.42 SS G_CDS: -5.27 Total: -11.69 kcal Atomic # 16 Polarization: -32.72 SS G_CDS: -2.83 Total: -35.55 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -40.01 -11.93 -51.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607758_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.764 kcal (2) G-P(sol) polarization free energy of solvation -40.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds