Wall clock time and date at job start Mon Mar 8 2021 10:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 H 1.00895 * 109.46856 * 2 1 4 4 C 1.46896 * 109.47137 * 120.00167 * 2 1 3 5 5 C 1.46900 * 109.46837 * 239.99791 * 2 1 3 6 6 C 1.53005 * 109.47141 * 65.00317 * 5 2 1 7 7 H 1.09003 * 112.84903 * 43.80248 * 6 5 2 8 8 C 1.53778 * 113.61621 * 174.99787 * 6 5 2 9 9 C 1.53781 * 87.08353 * 140.06536 * 8 6 5 10 10 H 1.08999 * 113.61397 * 89.19485 * 9 8 6 11 11 N 1.46502 * 113.61382 * 220.02059 * 9 8 6 12 12 S 1.65598 * 119.99565 * 213.46782 * 11 9 8 13 13 O 1.42104 * 106.40458 * 311.45951 * 12 11 9 14 14 O 1.42102 * 106.40035 * 178.54223 * 12 11 9 15 15 C 1.76199 * 107.21932 * 65.00478 * 12 11 9 16 16 C 1.33380 * 122.54262 * 89.96888 * 15 12 11 17 17 S 1.75887 * 109.59348 * 179.97438 * 16 15 12 18 18 C 1.75884 * 90.97226 * 0.02562 * 17 16 15 19 19 C 1.50699 * 125.20431 * 179.97438 * 18 17 16 20 20 O 1.42894 * 109.47188 * 245.01827 * 19 18 17 21 21 Si 1.86298 * 109.46950 * 5.02501 * 19 18 17 22 22 C 1.33387 * 109.59055 * 0.22211 * 18 17 16 23 23 C 1.53781 * 87.16994 * 334.61006 * 9 8 6 24 24 H 1.08995 * 109.47412 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46846 * 300.00230 * 1 2 3 26 26 H 1.09003 * 109.46686 * 59.99638 * 1 2 3 27 27 H 1.08995 * 109.47359 * 180.02562 * 4 2 1 28 28 H 1.08999 * 109.46924 * 300.00341 * 4 2 1 29 29 H 1.09004 * 109.47020 * 59.99800 * 4 2 1 30 30 H 1.08994 * 109.47345 * 305.00149 * 5 2 1 31 31 H 1.09001 * 109.46906 * 184.99998 * 5 2 1 32 32 H 1.09000 * 113.61105 * 25.51506 * 8 6 5 33 33 H 1.09001 * 113.61228 * 254.61601 * 8 6 5 34 34 H 0.96994 * 119.99867 * 33.46656 * 11 9 8 35 35 H 1.08003 * 125.20514 * 0.02752 * 16 15 12 36 36 H 1.09006 * 109.46662 * 125.02096 * 19 18 17 37 37 H 0.96709 * 113.99337 * 60.00344 * 20 19 18 38 38 H 1.48506 * 109.99834 * 180.02562 * 21 19 18 39 39 H 1.48502 * 110.00011 * 301.31529 * 21 19 18 40 40 H 1.08002 * 122.53824 * 179.74900 * 22 18 17 41 41 H 1.09005 * 113.61499 * 139.93789 * 23 9 8 42 42 H 1.08999 * 113.61911 * 270.83927 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9587 -0.6925 1.1994 5 6 1.9587 -0.6926 -1.1994 6 6 1.5539 0.0977 -2.4456 7 1 1.7120 1.1706 -2.3362 8 6 2.1234 -0.4788 -3.7525 9 6 0.7630 -0.1591 -4.3943 10 1 0.7053 0.8431 -4.8189 11 7 0.2907 -1.1955 -5.3157 12 16 -0.5950 -0.7755 -6.6504 13 8 -1.6131 0.1053 -6.1956 14 8 -0.8668 -1.9834 -7.3479 15 6 0.4565 0.1766 -7.6956 16 6 1.2207 -0.3753 -8.6392 17 16 2.1252 0.8805 -9.4750 18 6 1.3935 2.1211 -8.4655 19 6 1.6745 3.5984 -8.5637 20 8 2.3083 4.0436 -7.3629 21 14 2.7967 3.9219 -10.0152 22 6 0.5559 1.5538 -7.5962 23 6 0.1585 -0.2665 -2.9843 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.0487 -0.6921 1.1996 28 1 1.5953 -0.1787 2.0894 29 1 1.5953 -1.7202 1.1994 30 1 1.5240 -1.6910 -1.2453 31 1 3.0450 -0.7708 -1.1558 32 1 2.3418 -1.5455 -3.7005 33 1 2.9479 0.1035 -4.1638 34 1 0.4968 -2.1276 -5.1440 35 1 1.2751 -1.4317 -8.8574 36 1 0.7375 4.1381 -8.7015 37 1 3.1498 3.6048 -7.1764 38 1 3.0820 5.3753 -10.1226 39 1 4.0651 3.1664 -9.8548 40 1 -0.0045 2.1259 -6.8715 41 1 -0.6012 0.4872 -2.7764 42 1 -0.1614 -1.2749 -2.7219 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607758_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:33:59 Heat of formation + Delta-G solvation = 60.248819 kcal Electronic energy + Delta-G solvation = -25296.909003 eV Core-core repulsion = 21616.794570 eV Total energy + Delta-G solvation = -3680.114433 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.098 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.13605 -39.69362 -39.51019 -38.40477 -37.69338 -37.06176 -34.38168 -31.88323 -29.90050 -29.46391 -27.26514 -26.62611 -25.72848 -24.99752 -23.62309 -21.49574 -21.09380 -20.29994 -19.27344 -19.05511 -18.56721 -18.05929 -17.88550 -17.69568 -17.34067 -16.81975 -16.44069 -16.06610 -15.93776 -15.55160 -15.00252 -14.71242 -14.30157 -14.23348 -14.00622 -13.89882 -13.75910 -13.58743 -13.47345 -13.42871 -13.35746 -13.26985 -13.24418 -13.11543 -12.99863 -12.93628 -12.57494 -12.37157 -11.98319 -11.77371 -11.59409 -11.43586 -10.86877 -10.46507 -10.25667 -9.88868 -5.11490 -0.81864 -0.50932 0.30168 0.57003 0.93965 1.05918 1.13592 1.41868 1.80761 2.04360 2.64849 2.91412 2.98445 3.16060 3.23641 3.29878 3.39296 3.51023 3.55544 3.73594 3.78832 3.85719 3.94020 4.13770 4.17587 4.22707 4.26179 4.38395 4.41566 4.44649 4.51764 4.59161 4.73869 4.79553 4.81363 4.84510 4.86941 4.87742 4.91015 5.02586 5.03949 5.11991 5.46433 6.02956 6.34826 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.013679 B = 0.003796 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.420480 B = 7373.658495 C = 8633.683559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.369 5.369 3 H 0.439 0.561 4 C -0.046 4.046 5 C 0.010 3.990 6 C -0.121 4.121 7 H 0.132 0.868 8 C -0.130 4.130 9 C 0.099 3.901 10 H 0.109 0.891 11 N -1.087 6.087 12 S 2.721 3.279 13 O -0.980 6.980 14 O -0.993 6.993 15 C -0.692 4.692 16 C -0.087 4.087 17 S 0.171 5.829 18 C -0.228 4.228 19 C -0.027 4.027 20 O -0.533 6.533 21 Si 0.696 3.304 22 C -0.053 4.053 23 C -0.161 4.161 24 H 0.120 0.880 25 H 0.126 0.874 26 H 0.119 0.881 27 H 0.126 0.874 28 H 0.123 0.877 29 H 0.117 0.883 30 H 0.136 0.864 31 H 0.148 0.852 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.431 0.569 35 H 0.199 0.801 36 H 0.137 0.863 37 H 0.389 0.611 38 H -0.278 1.278 39 H -0.254 1.254 40 H 0.161 0.839 41 H 0.088 0.912 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.869 -4.350 28.460 29.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 N 0.054 4.946 3 H 0.276 0.724 4 C -0.188 4.188 5 C -0.112 4.112 6 C -0.140 4.140 7 H 0.150 0.850 8 C -0.170 4.170 9 C -0.007 4.007 10 H 0.127 0.873 11 N -0.850 5.850 12 S 2.809 3.191 13 O -0.970 6.970 14 O -0.983 6.983 15 C -0.793 4.793 16 C -0.226 4.226 17 S 0.435 5.565 18 C -0.345 4.345 19 C -0.140 4.140 20 O -0.341 6.341 21 Si 0.598 3.402 22 C -0.082 4.082 23 C -0.200 4.200 24 H 0.139 0.861 25 H 0.144 0.856 26 H 0.137 0.863 27 H 0.145 0.855 28 H 0.142 0.858 29 H 0.136 0.864 30 H 0.154 0.846 31 H 0.166 0.834 32 H 0.127 0.873 33 H 0.101 0.899 34 H 0.270 0.730 35 H 0.216 0.784 36 H 0.154 0.846 37 H 0.239 0.761 38 H -0.204 1.204 39 H -0.179 1.179 40 H 0.178 0.822 41 H 0.106 0.894 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.188 -3.923 26.795 28.018 hybrid contribution 0.151 0.130 1.221 1.237 sum 7.339 -3.793 28.016 29.208 Atomic orbital electron populations 1.24300 0.76731 1.09594 1.09521 1.44830 1.15568 1.19563 1.14614 0.72378 1.24113 1.05748 1.02299 0.86652 1.23901 1.05981 0.99360 0.81939 1.22812 0.96079 1.02266 0.92854 0.85020 1.23375 0.95880 1.03667 0.94056 1.22699 0.97277 0.91058 0.89713 0.87270 1.55255 1.73749 1.17153 1.38854 1.00983 0.73151 0.72132 0.72834 1.93578 1.54503 1.67959 1.80973 1.93586 1.84127 1.46295 1.74274 1.29927 1.22322 1.07680 1.19323 1.26184 0.95581 1.05292 0.95584 1.84688 1.40650 0.96262 1.34886 1.25049 1.05972 1.00216 1.03301 1.24307 1.04987 0.89052 0.95691 1.86616 1.40364 1.66503 1.40611 0.94305 0.80839 0.81592 0.83426 1.19679 0.97365 0.91268 0.99839 1.23995 0.97165 1.04661 0.94199 0.86136 0.85587 0.86286 0.85514 0.85825 0.86391 0.84563 0.83431 0.87315 0.89925 0.73045 0.78416 0.84586 0.76116 1.20367 1.17865 0.82204 0.89366 0.87159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 3.66 8.57 127.69 1.09 4.75 16 2 N -0.37 24.48 0.66 -948.84 -0.62 23.85 16 3 H 0.44 -30.77 8.40 -89.70 -0.75 -31.52 16 4 C -0.05 2.96 9.19 127.69 1.17 4.14 16 5 C 0.01 -0.64 4.57 86.30 0.39 -0.24 16 6 C -0.12 6.57 3.30 -10.21 -0.03 6.53 16 7 H 0.13 -7.48 8.10 -2.39 -0.02 -7.50 16 8 C -0.13 5.95 7.42 31.12 0.23 6.18 16 9 C 0.10 -3.82 4.34 45.52 0.20 -3.62 16 10 H 0.11 -3.96 7.93 -2.39 -0.02 -3.98 16 11 N -1.09 34.80 5.79 -167.19 -0.97 33.83 16 12 S 2.72 -54.51 5.74 -56.49 -0.32 -54.84 16 13 O -0.98 13.42 17.40 -128.00 -2.23 11.19 16 14 O -0.99 11.87 17.64 -128.00 -2.26 9.61 16 15 C -0.69 13.99 5.86 21.22 0.12 14.11 16 16 C -0.09 1.79 10.70 66.72 0.71 2.51 16 17 S 0.17 -3.43 20.60 -56.49 -1.16 -4.60 16 18 C -0.23 4.51 5.70 24.59 0.14 4.65 16 19 C -0.03 0.54 2.96 71.24 0.21 0.75 16 20 O -0.53 10.47 12.88 -148.98 -1.92 8.56 16 21 Si 0.70 -12.29 30.98 68.60 2.13 -10.16 16 22 C -0.05 1.06 9.46 21.22 0.20 1.26 16 23 C -0.16 7.47 5.70 31.18 0.18 7.65 16 24 H 0.12 -7.35 8.11 -2.39 -0.02 -7.37 16 25 H 0.13 -7.78 8.14 -2.39 -0.02 -7.80 16 26 H 0.12 -7.08 5.13 -2.39 -0.01 -7.10 16 27 H 0.13 -8.13 8.11 -2.39 -0.02 -8.15 16 28 H 0.12 -7.81 8.14 -2.39 -0.02 -7.83 16 29 H 0.12 -7.39 8.14 -2.38 -0.02 -7.41 16 30 H 0.14 -8.51 7.80 -2.39 -0.02 -8.53 16 31 H 0.15 -9.46 8.09 -2.39 -0.02 -9.48 16 32 H 0.11 -5.12 8.10 -2.39 -0.02 -5.14 16 33 H 0.08 -3.58 8.14 -2.39 -0.02 -3.60 16 34 H 0.43 -15.48 8.93 -96.75 -0.86 -16.34 16 35 H 0.20 -4.70 8.00 -2.91 -0.02 -4.73 16 36 H 0.14 -2.80 7.96 -2.38 -0.02 -2.82 16 37 H 0.39 -10.24 8.70 -74.05 -0.64 -10.88 16 38 H -0.28 2.71 7.11 99.48 0.71 3.42 16 39 H -0.25 3.89 7.11 99.48 0.71 4.59 16 40 H 0.16 -3.47 7.97 -2.91 -0.02 -3.49 16 41 H 0.09 -3.98 7.20 -2.38 -0.02 -3.99 16 42 H 0.11 -5.29 7.91 -2.39 -0.02 -5.31 16 Total: 1.00 -84.94 362.71 -3.91 -88.85 By element: Atomic # 1 Polarization: -153.77 SS G_CDS: -1.17 Total: -154.94 kcal Atomic # 6 Polarization: 44.03 SS G_CDS: 4.63 Total: 48.66 kcal Atomic # 7 Polarization: 59.27 SS G_CDS: -1.59 Total: 57.68 kcal Atomic # 8 Polarization: 35.76 SS G_CDS: -6.40 Total: 29.35 kcal Atomic # 14 Polarization: -12.29 SS G_CDS: 2.13 Total: -10.16 kcal Atomic # 16 Polarization: -57.95 SS G_CDS: -1.49 Total: -59.43 kcal Total: -84.94 -3.91 -88.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607758_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.097 kcal (2) G-P(sol) polarization free energy of solvation -84.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds