Wall clock time and date at job start Mon Mar 8 2021 10:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33390 * 125.20083 * 2 1 4 4 C 1.50709 * 122.53976 * 0.02668 * 3 2 1 5 5 O 1.42896 * 109.46833 * 315.09129 * 4 3 2 6 6 Si 1.86300 * 109.46802 * 75.08968 * 4 3 2 7 7 C 1.38427 * 114.92245 * 179.75582 * 3 2 1 8 8 S 1.76194 * 122.54022 * 180.27027 * 7 3 2 9 9 O 1.42105 * 106.40701 * 23.21483 * 8 7 3 10 10 O 1.42102 * 106.40576 * 156.13720 * 8 7 3 11 11 N 1.65601 * 107.21833 * 269.67676 * 8 7 3 12 12 C 1.46502 * 120.00151 * 66.42629 * 11 8 7 13 13 H 1.08997 * 112.84692 * 12.74219 * 12 11 8 14 14 C 1.53776 * 113.61463 * 143.94839 * 12 11 8 15 15 C 1.53783 * 87.08239 * 139.97978 * 14 12 11 16 16 H 1.09003 * 113.61434 * 89.11154 * 15 14 12 17 17 C 1.53002 * 113.61148 * 219.93163 * 15 14 12 18 18 N 1.46904 * 109.46872 * 184.99796 * 17 15 14 19 19 H 1.00902 * 109.47329 * 55.00044 * 18 17 15 20 20 C 1.46896 * 109.46828 * 175.00092 * 18 17 15 21 21 C 1.46902 * 109.46966 * 295.00386 * 18 17 15 22 22 C 1.53783 * 87.07890 * 334.56541 * 15 14 12 23 23 C 1.33388 * 114.91690 * 0.24977 * 7 3 2 24 24 C 1.50698 * 125.19770 * 179.97438 * 23 7 3 25 25 S 1.75877 * 109.59743 * 359.97438 * 23 7 3 26 26 H 1.09003 * 109.47588 * 90.94599 * 1 2 3 27 27 H 1.09009 * 109.47253 * 210.93997 * 1 2 3 28 28 H 1.08994 * 109.47715 * 330.94510 * 1 2 3 29 29 H 1.08992 * 109.47150 * 195.09175 * 4 3 2 30 30 H 0.96700 * 113.99687 * 179.97438 * 5 4 3 31 31 H 1.48492 * 110.00280 * 305.16891 * 6 4 3 32 32 H 1.48500 * 109.99910 * 66.49601 * 6 4 3 33 33 H 0.97001 * 119.99826 * 246.42292 * 11 8 7 34 34 H 1.09007 * 113.61257 * 254.52542 * 14 12 11 35 35 H 1.09001 * 113.61851 * 25.34352 * 14 12 11 36 36 H 1.08991 * 109.47176 * 304.99778 * 17 15 14 37 37 H 1.08993 * 109.47077 * 64.99886 * 17 15 14 38 38 H 1.09001 * 109.47078 * 60.00133 * 20 18 17 39 39 H 1.09004 * 109.47138 * 179.97438 * 20 18 17 40 40 H 1.08992 * 109.47347 * 299.99578 * 20 18 17 41 41 H 1.09002 * 109.46704 * 299.99580 * 21 18 17 42 42 H 1.08995 * 109.47667 * 59.99836 * 21 18 17 43 43 H 1.09004 * 109.46972 * 180.02562 * 21 18 17 44 44 H 1.09003 * 113.61146 * 270.88493 * 22 15 14 45 45 H 1.09002 * 113.61477 * 139.98354 * 22 15 14 46 46 H 1.08999 * 109.47895 * 84.31058 * 24 23 7 47 47 H 1.09007 * 109.46931 * 204.31194 * 24 23 7 48 48 H 1.09005 * 109.47505 * 324.30307 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7050 2.4848 0.0006 5 8 0.6411 2.5643 -0.9501 6 14 1.0521 2.8877 1.6983 7 6 3.6379 0.8430 0.0054 8 16 4.8354 2.1354 0.0134 9 8 4.1870 3.2801 0.5504 10 8 6.0202 1.5813 0.5687 11 7 5.1820 2.4923 -1.5662 12 6 4.1542 3.0849 -2.4258 13 1 3.2901 3.4435 -1.8666 14 6 4.7070 4.1098 -3.4301 15 6 3.7303 3.5128 -4.4570 16 1 2.7494 3.9881 -4.4542 17 6 4.3228 3.3810 -5.8616 18 7 3.2831 2.9171 -6.7899 19 1 2.4898 3.5390 -6.7446 20 6 3.8182 2.9050 -8.1579 21 6 2.8632 1.5599 -6.4162 22 6 3.7872 2.2125 -3.6379 23 6 3.9750 -0.4476 0.0044 24 6 5.3860 -0.9768 0.0089 25 16 2.5210 -1.4371 -0.0028 26 1 -0.3634 -0.0170 -1.0275 27 1 -0.3634 -0.8815 0.5284 28 1 -0.3634 0.8983 0.4990 29 1 2.4855 3.1969 -0.2671 30 1 0.2257 3.4359 -1.0033 31 1 0.0773 1.8527 2.1265 32 1 2.1734 2.9622 2.6691 33 1 6.0655 2.3092 -1.9222 34 1 4.4847 5.1437 -3.1659 35 1 5.7562 3.9533 -3.6810 36 1 4.6972 4.3504 -6.1903 37 1 5.1417 2.6620 -5.8444 38 1 4.6752 2.2331 -8.2068 39 1 3.0470 2.5603 -8.8467 40 1 4.1297 3.9120 -8.4351 41 1 3.7201 0.8881 -6.4653 42 1 2.4661 1.5689 -5.4012 43 1 2.0920 1.2155 -7.1054 44 1 4.5845 1.5364 -3.9468 45 1 2.8223 1.7147 -3.5415 46 1 5.7582 -1.0108 1.0328 47 1 5.3989 -1.9806 -0.4159 48 1 6.0217 -0.3219 -0.5872 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607758_15065288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:34:03 Heat of formation + Delta-G solvation = 64.116700 kcal Electronic energy + Delta-G solvation = -31032.966018 eV Core-core repulsion = 27041.944070 eV Total energy + Delta-G solvation = -3991.021947 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.129 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.12133 -40.37117 -39.61891 -38.72057 -37.21184 -37.19595 -34.45242 -34.28204 -30.98618 -29.88508 -29.44458 -28.16752 -26.60771 -26.01414 -25.69888 -23.63197 -23.23100 -21.25704 -20.74601 -20.08646 -19.25430 -19.01308 -18.70962 -18.01659 -17.83489 -17.48133 -17.31006 -16.85314 -16.36571 -16.03674 -15.87568 -15.59895 -15.25933 -14.72425 -14.52510 -14.46879 -14.35533 -14.16822 -14.03111 -13.77699 -13.75916 -13.58766 -13.57048 -13.44721 -13.43361 -13.36298 -13.23035 -13.11642 -13.05993 -12.94286 -12.92666 -12.72702 -12.32097 -12.00433 -11.83860 -11.70631 -11.58914 -11.43021 -10.59415 -10.46741 -10.12635 -9.50575 -5.19286 -0.93238 -0.57763 0.24078 0.58725 0.63832 1.08257 1.37564 1.51368 1.91169 1.96750 2.50196 2.93011 3.00821 3.03073 3.12561 3.26551 3.41862 3.53699 3.55630 3.70650 3.76079 3.79980 3.92700 3.98024 4.05844 4.15134 4.19673 4.24444 4.26712 4.39310 4.41276 4.43518 4.48936 4.56213 4.58669 4.60840 4.76212 4.80339 4.81533 4.83459 4.89711 4.90301 4.93672 4.97178 4.98787 5.06380 5.14955 5.16665 5.49386 5.98816 6.87117 Molecular weight = 362.13amu Principal moments of inertia in cm(-1) A = 0.010164 B = 0.004453 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.196655 B = 6286.508577 C = 6548.027858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.175 4.175 3 C -0.053 4.053 4 C -0.045 4.045 5 O -0.537 6.537 6 Si 0.721 3.279 7 C -0.694 4.694 8 S 2.704 3.296 9 O -0.974 6.974 10 O -0.983 6.983 11 N -1.083 6.083 12 C 0.093 3.907 13 H 0.113 0.887 14 C -0.132 4.132 15 C -0.117 4.117 16 H 0.137 0.863 17 C 0.009 3.991 18 N -0.368 5.368 19 H 0.439 0.561 20 C -0.046 4.046 21 C -0.059 4.059 22 C -0.156 4.156 23 C -0.052 4.052 24 C -0.115 4.115 25 S 0.163 5.837 26 H 0.103 0.897 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.406 0.594 31 H -0.281 1.281 32 H -0.318 1.318 33 H 0.432 0.568 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.148 0.852 37 H 0.136 0.864 38 H 0.117 0.883 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.125 0.875 44 H 0.110 0.890 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.102 0.898 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.402 6.277 -31.904 32.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.293 4.293 3 C -0.063 4.063 4 C -0.159 4.159 5 O -0.346 6.346 6 Si 0.629 3.371 7 C -0.794 4.794 8 S 2.792 3.208 9 O -0.964 6.964 10 O -0.973 6.973 11 N -0.847 5.847 12 C -0.014 4.014 13 H 0.131 0.869 14 C -0.172 4.172 15 C -0.136 4.136 16 H 0.155 0.845 17 C -0.113 4.113 18 N 0.055 4.945 19 H 0.277 0.723 20 C -0.188 4.188 21 C -0.201 4.201 22 C -0.196 4.196 23 C -0.173 4.173 24 C -0.174 4.174 25 S 0.429 5.571 26 H 0.121 0.879 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.131 0.869 30 H 0.258 0.742 31 H -0.208 1.208 32 H -0.247 1.247 33 H 0.270 0.730 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.166 0.834 37 H 0.154 0.846 38 H 0.135 0.865 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.128 0.872 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.121 0.879 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.256 4.064 -30.356 30.652 hybrid contribution 0.455 0.471 0.594 0.884 sum -0.802 4.534 -29.761 30.116 Atomic orbital electron populations 1.20527 0.86110 1.03024 1.04571 1.24715 1.01329 0.94936 1.08302 1.17722 0.89923 0.95392 1.03267 1.24420 0.94345 0.93883 1.03240 1.86384 1.49246 1.39801 1.59214 0.95447 0.79405 0.86277 0.75939 1.29450 1.11488 1.13706 1.24738 1.01410 0.72375 0.73087 0.73907 1.93491 1.76573 1.48708 1.77606 1.93589 1.46530 1.79961 1.77222 1.55195 1.22818 1.77123 1.29550 1.22899 0.90857 0.96614 0.91020 0.86885 1.23387 1.00889 0.99407 0.93499 1.22767 1.01881 0.97540 0.91436 0.84535 1.23913 0.91564 1.07406 0.88434 1.44819 1.17915 1.16865 1.14890 0.72326 1.24112 1.05247 1.09619 0.79849 1.24289 1.06672 0.81671 1.07468 1.23934 1.04220 0.97033 0.94372 1.24759 1.01361 0.94907 0.96271 1.20990 0.87372 1.03627 1.05378 1.84587 0.95074 1.08374 1.69058 0.87874 0.91949 0.90169 0.86880 0.74192 1.20752 1.24704 0.72958 0.89804 0.87478 0.83396 0.84621 0.86469 0.85800 0.85497 0.86248 0.86231 0.85627 0.87177 0.89293 0.89216 0.87915 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 1.50 9.04 71.23 0.64 2.14 16 2 C -0.17 2.80 6.16 24.59 0.15 2.95 16 3 C -0.05 0.88 4.23 -20.91 -0.09 0.79 16 4 C -0.04 0.91 2.06 71.24 0.15 1.05 16 5 O -0.54 15.11 11.06 -148.98 -1.65 13.46 16 6 Si 0.72 -9.47 30.48 68.60 2.09 -7.38 16 7 C -0.69 11.57 5.88 21.22 0.12 11.69 16 8 S 2.70 -46.33 5.29 -56.49 -0.30 -46.63 16 9 O -0.97 11.55 13.55 -128.00 -1.73 9.82 16 10 O -0.98 10.27 15.24 -128.00 -1.95 8.32 16 11 N -1.08 33.12 5.78 -167.20 -0.97 32.15 16 12 C 0.09 -3.50 4.44 45.52 0.20 -3.29 16 13 H 0.11 -3.98 5.55 -2.39 -0.01 -3.99 16 14 C -0.13 5.92 7.43 31.12 0.23 6.15 16 15 C -0.12 6.43 3.30 -10.27 -0.03 6.40 16 16 H 0.14 -7.93 8.10 -2.39 -0.02 -7.95 16 17 C 0.01 -0.56 4.57 86.30 0.39 -0.16 16 18 N -0.37 24.72 0.66 -948.86 -0.62 24.10 16 19 H 0.44 -31.19 8.41 -89.69 -0.75 -31.94 16 20 C -0.05 3.00 9.19 127.69 1.17 4.18 16 21 C -0.06 3.69 8.57 127.69 1.09 4.78 16 22 C -0.16 7.44 5.69 31.12 0.18 7.62 16 23 C -0.05 0.89 6.49 24.59 0.16 1.05 16 24 C -0.12 2.27 8.86 71.24 0.63 2.90 16 25 S 0.16 -2.78 23.31 -56.49 -1.32 -4.09 16 26 H 0.10 -2.27 8.14 -2.39 -0.02 -2.29 16 27 H 0.06 -1.05 8.14 -2.38 -0.02 -1.06 16 28 H 0.08 -1.31 4.51 -2.39 -0.01 -1.32 16 29 H 0.11 -2.56 2.85 -2.39 -0.01 -2.57 16 30 H 0.41 -15.20 8.74 -74.06 -0.65 -15.85 16 31 H -0.28 2.33 6.20 99.48 0.62 2.95 16 32 H -0.32 0.49 7.11 99.48 0.71 1.20 16 33 H 0.43 -15.09 8.95 -96.74 -0.87 -15.96 16 34 H 0.08 -3.52 8.14 -2.38 -0.02 -3.54 16 35 H 0.11 -4.93 8.10 -2.39 -0.02 -4.95 16 36 H 0.15 -9.54 8.09 -2.39 -0.02 -9.56 16 37 H 0.14 -8.55 7.79 -2.39 -0.02 -8.57 16 38 H 0.12 -7.41 8.14 -2.39 -0.02 -7.43 16 39 H 0.12 -7.91 8.14 -2.38 -0.02 -7.93 16 40 H 0.13 -8.21 8.11 -2.39 -0.02 -8.23 16 41 H 0.12 -7.39 8.11 -2.39 -0.02 -7.41 16 42 H 0.12 -7.24 5.13 -2.39 -0.01 -7.26 16 43 H 0.13 -7.87 8.14 -2.38 -0.02 -7.89 16 44 H 0.11 -5.45 7.90 -2.39 -0.02 -5.47 16 45 H 0.09 -4.11 7.19 -2.39 -0.02 -4.13 16 46 H 0.09 -1.45 8.14 -2.39 -0.02 -1.47 16 47 H 0.10 -2.45 8.14 -2.38 -0.02 -2.47 16 48 H 0.10 -2.35 6.70 -2.38 -0.02 -2.36 16 Total: 1.00 -86.74 383.96 -2.75 -89.49 By element: Atomic # 1 Polarization: -166.16 SS G_CDS: -1.31 Total: -167.47 kcal Atomic # 6 Polarization: 43.23 SS G_CDS: 5.01 Total: 48.24 kcal Atomic # 7 Polarization: 57.84 SS G_CDS: -1.59 Total: 56.24 kcal Atomic # 8 Polarization: 36.93 SS G_CDS: -5.33 Total: 31.60 kcal Atomic # 14 Polarization: -9.47 SS G_CDS: 2.09 Total: -7.38 kcal Atomic # 16 Polarization: -49.11 SS G_CDS: -1.62 Total: -50.73 kcal Total: -86.74 -2.75 -89.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607758_15065288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.605 kcal (2) G-P(sol) polarization free energy of solvation -86.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds