Wall clock time and date at job start Mon Mar 8 2021 10:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 H 1.00895 * 109.47296 * 2 1 4 4 C 1.46905 * 109.47008 * 120.00634 * 2 1 3 5 5 C 1.46896 * 109.46583 * 240.00282 * 2 1 3 6 6 C 1.53001 * 109.47327 * 65.00104 * 5 2 1 7 7 H 1.09000 * 112.90589 * 43.74212 * 6 5 2 8 8 C 1.53782 * 113.61516 * 174.99714 * 6 5 2 9 9 C 1.53787 * 87.08084 * 139.98306 * 8 6 5 10 10 H 1.08993 * 113.61504 * 89.19516 * 9 8 6 11 11 N 1.46499 * 113.61369 * 220.02172 * 9 8 6 12 12 S 1.65596 * 119.99758 * 214.75395 * 11 9 8 13 13 O 1.42102 * 106.40303 * 311.60496 * 12 11 9 14 14 O 1.42109 * 106.40058 * 178.68764 * 12 11 9 15 15 C 1.76197 * 107.22084 * 65.14775 * 12 11 9 16 16 C 1.38212 * 119.99859 * 64.23834 * 15 12 11 17 17 C 1.50696 * 120.00305 * 359.97438 * 16 15 12 18 18 O 1.42904 * 109.47214 * 284.36548 * 17 16 15 19 19 Si 1.86297 * 109.47219 * 164.36431 * 17 16 15 20 20 C 1.38255 * 119.99726 * 180.02562 * 16 15 12 21 21 C 1.38217 * 120.00416 * 359.95592 * 20 16 15 22 22 C 1.38262 * 119.99348 * 359.97438 * 21 20 16 23 23 C 1.38202 * 120.00177 * 0.09603 * 22 21 20 24 24 C 1.53784 * 113.61383 * 272.49763 * 6 5 2 25 25 H 1.08994 * 109.47147 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46664 * 299.99780 * 1 2 3 27 27 H 1.08999 * 109.47019 * 59.99341 * 1 2 3 28 28 H 1.09000 * 109.46350 * 179.97438 * 4 2 1 29 29 H 1.08999 * 109.46949 * 299.99350 * 4 2 1 30 30 H 1.08995 * 109.47049 * 59.99678 * 4 2 1 31 31 H 1.09002 * 109.47767 * 304.99984 * 5 2 1 32 32 H 1.09003 * 109.47207 * 184.99608 * 5 2 1 33 33 H 1.08995 * 113.61499 * 25.43607 * 8 6 5 34 34 H 1.09005 * 113.69001 * 254.53881 * 8 6 5 35 35 H 0.97001 * 120.00032 * 34.74843 * 11 9 8 36 36 H 1.08999 * 109.47182 * 44.36531 * 17 16 15 37 37 H 0.96696 * 113.99887 * 180.02562 * 18 17 16 38 38 H 1.48497 * 110.00235 * 60.00100 * 19 17 16 39 39 H 1.48503 * 109.99775 * 181.32092 * 19 17 16 40 40 H 1.08009 * 120.00197 * 179.97438 * 20 16 15 41 41 H 1.07997 * 120.00232 * 179.72174 * 21 20 16 42 42 H 1.07999 * 119.99287 * 180.02562 * 22 21 20 43 43 H 1.08005 * 119.99795 * 179.97438 * 23 22 21 44 44 H 1.08997 * 113.61534 * 105.46680 * 24 6 5 45 45 H 1.09001 * 113.61210 * 334.55844 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 1 1.8054 0.9512 0.0000 4 6 1.9587 -0.6927 1.1994 5 6 1.9586 -0.6924 -1.1995 6 6 1.5538 0.0978 -2.4455 7 1 1.7105 1.1710 -2.3368 8 6 2.1233 -0.4787 -3.7525 9 6 0.7620 -0.1609 -4.3936 10 1 0.7028 0.8410 -4.8187 11 7 0.2905 -1.1983 -5.3143 12 16 -0.5692 -0.7775 -6.6656 13 8 -1.5805 0.1225 -6.2337 14 8 -0.8490 -1.9876 -7.3561 15 6 0.5114 0.1493 -7.7037 16 6 1.6323 -0.4508 -8.2455 17 6 1.9307 -1.8977 -7.9480 18 8 2.4466 -2.0144 -6.6205 19 14 3.1917 -2.5343 -9.1625 20 6 2.4805 0.2766 -9.0597 21 6 2.2071 1.6037 -9.3326 22 6 1.0849 2.2036 -8.7917 23 6 0.2379 1.4768 -7.9766 24 6 0.1605 -0.2699 -2.9825 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 3.0487 -0.6930 1.1991 29 1 1.5955 -0.1788 2.0894 30 1 1.5953 -1.7202 1.1993 31 1 1.5240 -1.6910 -1.2455 32 1 3.0449 -0.7707 -1.1560 33 1 2.3430 -1.5450 -3.7003 34 1 2.9470 0.1035 -4.1657 35 1 0.4819 -2.1317 -5.1324 36 1 1.0151 -2.4827 -8.0347 37 1 2.6617 -2.9206 -6.3604 38 1 4.4448 -1.7449 -9.0543 39 1 3.4709 -3.9690 -8.8997 40 1 3.3568 -0.1922 -9.4828 41 1 2.8721 2.1731 -9.9649 42 1 0.8711 3.2404 -9.0052 43 1 -0.6385 1.9456 -7.5538 44 1 -0.6006 0.4817 -2.7730 45 1 -0.1563 -1.2792 -2.7197 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607758_2726874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:34:06 Heat of formation + Delta-G solvation = 63.921259 kcal Electronic energy + Delta-G solvation = -27766.759362 eV Core-core repulsion = 23997.651931 eV Total energy + Delta-G solvation = -3769.107431 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.142 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.13471 -40.66855 -39.60776 -38.60251 -37.60740 -37.06837 -34.28586 -33.00107 -32.43445 -29.87942 -29.46204 -26.98333 -26.56941 -25.71775 -24.45183 -23.60297 -22.72284 -21.14353 -20.60445 -19.26618 -18.95204 -18.58819 -18.41865 -17.98146 -17.48774 -17.22573 -17.02318 -16.51316 -16.01908 -15.97381 -15.76931 -15.19242 -15.10320 -14.69615 -14.20581 -14.07473 -13.90368 -13.70272 -13.59510 -13.54372 -13.45280 -13.41616 -13.37706 -13.30574 -13.24817 -13.10512 -13.08525 -12.93851 -12.29012 -12.04775 -11.94404 -11.75888 -11.65504 -11.40848 -10.59809 -10.45909 -10.29618 -10.08908 -4.96321 -0.69582 -0.32595 0.08680 1.05571 1.17146 1.51098 1.79799 1.92615 2.31323 2.62110 2.91814 2.98594 3.10930 3.23814 3.30211 3.42170 3.54282 3.66819 3.73840 3.76711 3.84247 3.94968 3.97472 4.14356 4.14874 4.21417 4.23255 4.30628 4.39147 4.40894 4.42145 4.54652 4.56291 4.74264 4.77013 4.80429 4.84748 4.87331 4.88353 4.92795 4.97215 5.06554 5.14473 5.18241 5.26695 5.50915 5.70519 6.15518 6.48266 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.004334 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.854012 B = 6459.626318 C = 6915.528215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.369 5.369 3 H 0.438 0.562 4 C -0.046 4.046 5 C 0.011 3.989 6 C -0.122 4.122 7 H 0.129 0.871 8 C -0.119 4.119 9 C 0.109 3.891 10 H 0.098 0.902 11 N -1.071 6.071 12 S 2.703 3.297 13 O -0.988 6.988 14 O -0.991 6.991 15 C -0.670 4.670 16 C 0.026 3.974 17 C -0.124 4.124 18 O -0.524 6.524 19 Si 0.742 3.258 20 C -0.151 4.151 21 C -0.059 4.059 22 C -0.139 4.139 23 C -0.038 4.038 24 C -0.157 4.157 25 H 0.120 0.880 26 H 0.126 0.874 27 H 0.118 0.882 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.430 0.570 36 H 0.108 0.892 37 H 0.398 0.602 38 H -0.278 1.278 39 H -0.281 1.281 40 H 0.143 0.857 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.148 0.852 44 H 0.087 0.913 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.005 2.592 26.971 27.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 N 0.054 4.946 3 H 0.276 0.724 4 C -0.188 4.188 5 C -0.111 4.111 6 C -0.142 4.142 7 H 0.147 0.853 8 C -0.159 4.159 9 C 0.002 3.998 10 H 0.116 0.884 11 N -0.833 5.833 12 S 2.794 3.206 13 O -0.978 6.978 14 O -0.981 6.981 15 C -0.757 4.757 16 C 0.024 3.976 17 C -0.234 4.234 18 O -0.334 6.334 19 Si 0.646 3.354 20 C -0.169 4.169 21 C -0.077 4.077 22 C -0.157 4.157 23 C -0.057 4.057 24 C -0.197 4.197 25 H 0.139 0.861 26 H 0.144 0.856 27 H 0.137 0.863 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.127 0.873 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.125 0.875 37 H 0.250 0.750 38 H -0.205 1.205 39 H -0.207 1.207 40 H 0.161 0.839 41 H 0.174 0.826 42 H 0.173 0.827 43 H 0.166 0.834 44 H 0.105 0.895 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.693 2.575 26.627 27.351 hybrid contribution 0.740 -0.196 0.151 0.781 sum 6.433 2.379 26.778 27.642 Atomic orbital electron populations 1.24295 0.76670 1.09605 1.09494 1.44838 1.15621 1.19530 1.14608 0.72448 1.24112 1.05713 1.02313 0.86633 1.23891 1.05890 0.99390 0.81908 1.22795 0.96287 1.02088 0.92982 0.85343 1.23253 0.95736 1.03477 0.93472 1.22503 0.97226 0.90612 0.89474 0.88389 1.54972 1.74121 1.16774 1.37476 1.01351 0.73283 0.72576 0.73402 1.93557 1.55447 1.67052 1.81761 1.93535 1.84269 1.46029 1.74262 1.30691 1.15162 1.08574 1.21281 1.18926 0.91867 0.93462 0.93325 1.25228 1.08307 0.96221 0.93690 1.86499 1.85655 1.35018 1.26270 0.93279 0.77141 0.76836 0.88155 1.21516 1.00141 0.95561 0.99717 1.21830 0.96130 0.94323 0.95427 1.21691 0.94803 1.01811 0.97412 1.21228 0.98465 0.91574 0.94408 1.23951 0.96993 1.04582 0.94135 0.86105 0.85557 0.86334 0.85591 0.85765 0.86359 0.84441 0.83612 0.87252 0.91125 0.73176 0.87489 0.75033 1.20465 1.20744 0.83916 0.82569 0.82744 0.83431 0.89493 0.87050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 3.58 8.57 127.69 1.09 4.67 16 2 N -0.37 24.18 0.66 -948.82 -0.62 23.56 16 3 H 0.44 -30.30 8.41 -89.70 -0.75 -31.05 16 4 C -0.05 2.91 9.19 127.69 1.17 4.09 16 5 C 0.01 -0.69 4.57 86.30 0.39 -0.29 16 6 C -0.12 6.41 3.31 -10.27 -0.03 6.38 16 7 H 0.13 -7.04 8.10 -2.39 -0.02 -7.06 16 8 C -0.12 5.11 7.43 31.12 0.23 5.34 16 9 C 0.11 -3.89 4.35 45.52 0.20 -3.69 16 10 H 0.10 -3.18 8.05 -2.39 -0.02 -3.20 16 11 N -1.07 31.27 4.05 -167.18 -0.68 30.60 16 12 S 2.70 -46.36 5.01 -56.49 -0.28 -46.64 16 13 O -0.99 11.57 16.73 -128.00 -2.14 9.43 16 14 O -0.99 10.38 15.54 -128.00 -1.99 8.39 16 15 C -0.67 11.07 5.88 22.27 0.13 11.20 16 16 C 0.03 -0.44 5.28 -19.87 -0.10 -0.54 16 17 C -0.12 2.51 2.02 71.23 0.14 2.65 16 18 O -0.52 14.08 10.54 -148.98 -1.57 12.51 16 19 Si 0.74 -14.03 30.22 68.60 2.07 -11.96 16 20 C -0.15 2.67 8.66 22.27 0.19 2.86 16 21 C -0.06 1.13 10.05 22.27 0.22 1.36 16 22 C -0.14 2.61 10.05 22.27 0.22 2.84 16 23 C -0.04 0.64 9.55 22.27 0.21 0.85 16 24 C -0.16 7.06 5.69 31.12 0.18 7.24 16 25 H 0.12 -7.31 8.11 -2.39 -0.02 -7.33 16 26 H 0.13 -7.74 8.14 -2.38 -0.02 -7.76 16 27 H 0.12 -6.97 5.13 -2.39 -0.01 -6.98 16 28 H 0.13 -7.99 8.11 -2.39 -0.02 -8.01 16 29 H 0.12 -7.79 8.14 -2.39 -0.02 -7.81 16 30 H 0.12 -7.35 8.14 -2.39 -0.02 -7.37 16 31 H 0.14 -8.46 7.79 -2.39 -0.02 -8.48 16 32 H 0.15 -9.13 8.09 -2.39 -0.02 -9.15 16 33 H 0.11 -4.87 8.10 -2.39 -0.02 -4.89 16 34 H 0.07 -2.70 8.14 -2.38 -0.02 -2.71 16 35 H 0.43 -14.39 8.42 -96.75 -0.81 -15.21 16 36 H 0.11 -2.00 5.39 -2.39 -0.01 -2.01 16 37 H 0.40 -13.57 8.74 -74.06 -0.65 -14.22 16 38 H -0.28 4.05 6.73 99.48 0.67 4.72 16 39 H -0.28 4.07 7.11 99.48 0.71 4.77 16 40 H 0.14 -2.80 4.91 -2.91 -0.01 -2.81 16 41 H 0.16 -3.68 8.06 -2.91 -0.02 -3.71 16 42 H 0.15 -3.56 8.06 -2.91 -0.02 -3.58 16 43 H 0.15 -2.71 7.34 -2.91 -0.02 -2.73 16 44 H 0.09 -3.81 7.18 -2.39 -0.02 -3.83 16 45 H 0.11 -5.23 7.90 -2.39 -0.02 -5.25 16 Total: 1.00 -82.67 359.60 -2.15 -84.82 By element: Atomic # 1 Polarization: -154.45 SS G_CDS: -1.20 Total: -155.65 kcal Atomic # 6 Polarization: 40.68 SS G_CDS: 4.26 Total: 44.94 kcal Atomic # 7 Polarization: 55.45 SS G_CDS: -1.30 Total: 54.15 kcal Atomic # 8 Polarization: 36.03 SS G_CDS: -5.70 Total: 30.33 kcal Atomic # 14 Polarization: -14.03 SS G_CDS: 2.07 Total: -11.96 kcal Atomic # 16 Polarization: -46.36 SS G_CDS: -0.28 Total: -46.64 kcal Total: -82.67 -2.15 -84.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607758_2726874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.745 kcal (2) G-P(sol) polarization free energy of solvation -82.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds