Wall clock time and date at job start Mon Mar 8 2021 10:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 H 1.00896 * 109.46896 * 2 1 4 4 C 1.46898 * 109.46978 * 120.00043 * 2 1 3 5 5 C 1.46898 * 109.47075 * 240.00031 * 2 1 3 6 6 C 1.53003 * 109.47368 * 64.99770 * 5 2 1 7 7 H 1.09006 * 112.84547 * 43.80525 * 6 5 2 8 8 C 1.53785 * 113.61350 * 174.99807 * 6 5 2 9 9 C 1.53777 * 87.07678 * 140.06767 * 8 6 5 10 10 H 1.08998 * 113.61734 * 219.93380 * 9 8 6 11 11 N 1.46506 * 113.61372 * 89.11772 * 9 8 6 12 12 S 1.65602 * 120.00166 * 146.52679 * 11 9 8 13 13 O 1.42105 * 106.40176 * 311.46127 * 12 11 9 14 14 O 1.42095 * 106.40125 * 178.53983 * 12 11 9 15 15 C 1.76205 * 107.21590 * 64.99795 * 12 11 9 16 16 C 1.38228 * 120.00115 * 270.21437 * 15 12 11 17 17 C 1.38238 * 120.00114 * 180.26081 * 16 15 12 18 18 C 1.38234 * 119.99675 * 359.50218 * 17 16 15 19 19 C 1.50702 * 120.00257 * 180.25732 * 18 17 16 20 20 O 1.42905 * 109.46880 * 65.00285 * 19 18 17 21 21 Si 1.86296 * 109.47619 * 185.00353 * 19 18 17 22 22 C 1.38235 * 120.00220 * 0.28720 * 18 17 16 23 23 C 1.38234 * 119.99800 * 90.00128 * 15 12 11 24 24 C 1.53778 * 87.17731 * 334.52841 * 9 8 6 25 25 H 1.09001 * 109.47102 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47101 * 300.00145 * 1 2 3 27 27 H 1.09004 * 109.46958 * 60.00366 * 1 2 3 28 28 H 1.08997 * 109.47183 * 179.97438 * 4 2 1 29 29 H 1.09003 * 109.47251 * 300.00093 * 4 2 1 30 30 H 1.09001 * 109.47256 * 60.00031 * 4 2 1 31 31 H 1.09000 * 109.47229 * 304.99846 * 5 2 1 32 32 H 1.09001 * 109.47346 * 185.00135 * 5 2 1 33 33 H 1.09000 * 113.61227 * 25.52344 * 8 6 5 34 34 H 1.09001 * 113.61058 * 254.61840 * 8 6 5 35 35 H 0.97002 * 119.99688 * 326.52345 * 11 9 8 36 36 H 1.08004 * 120.00270 * 0.03482 * 16 15 12 37 37 H 1.08002 * 120.00519 * 179.78838 * 17 16 15 38 38 H 1.08996 * 109.47264 * 305.00948 * 19 18 17 39 39 H 0.96696 * 114.00393 * 180.02562 * 20 19 18 40 40 H 1.48495 * 110.00079 * 178.68631 * 21 19 18 41 41 H 1.48504 * 109.99525 * 300.00265 * 21 19 18 42 42 H 1.07996 * 120.00471 * 179.97438 * 22 18 17 43 43 H 1.08001 * 120.00294 * 0.02562 * 23 15 12 44 44 H 1.08993 * 113.61730 * 140.02642 * 24 9 8 45 45 H 1.09004 * 113.60780 * 270.92699 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9587 -0.6925 1.1994 5 6 1.9587 -0.6925 -1.1994 6 6 1.5539 0.0976 -2.4456 7 1 1.7120 1.1706 -2.3362 8 6 2.1235 -0.4789 -3.7525 9 6 0.7631 -0.1592 -4.3942 10 1 0.4123 -0.9296 -5.0809 11 7 0.6848 1.1885 -4.9633 12 16 -0.2248 1.4631 -6.3196 13 8 0.1369 0.4571 -7.2558 14 8 -0.1247 2.8535 -6.5951 15 6 -1.9067 1.1609 -5.8895 16 6 -2.4398 -0.1063 -6.0331 17 6 -3.7607 -0.3422 -5.7008 18 6 -4.5456 0.6869 -5.2152 19 6 -5.9840 0.4285 -4.8474 20 8 -6.0381 -0.4763 -3.7427 21 14 -6.8025 2.0342 -4.3756 22 6 -4.0113 1.9532 -5.0675 23 6 -2.6917 2.1901 -5.4044 24 6 0.1581 -0.2687 -2.9846 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.0486 -0.6929 1.1992 29 1 1.5953 -0.1787 2.0894 30 1 1.5953 -1.7202 1.1994 31 1 1.5241 -1.6910 -1.2453 32 1 3.0450 -0.7707 -1.1558 33 1 2.3419 -1.5455 -3.7005 34 1 2.9480 0.1035 -4.1638 35 1 1.1659 1.9200 -4.5456 36 1 -1.8254 -0.9114 -6.4083 37 1 -4.1783 -1.3316 -5.8161 38 1 -6.5044 -0.0077 -5.7001 39 1 -6.9354 -0.6886 -3.4516 40 1 -8.2299 1.7976 -4.0413 41 1 -6.1023 2.6390 -3.2140 42 1 -4.6245 2.7573 -4.6886 43 1 -2.2743 3.1796 -5.2894 44 1 -0.6030 0.4832 -2.7765 45 1 -0.1598 -1.2780 -2.7232 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607760_13421422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:34:11 Heat of formation + Delta-G solvation = 87.226170 kcal Electronic energy + Delta-G solvation = -27003.828817 eV Core-core repulsion = 23235.731963 eV Total energy + Delta-G solvation = -3768.096854 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.142 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -44.55562 -41.71227 -41.55007 -39.23011 -38.72435 -37.84455 -35.69648 -34.10212 -33.15533 -32.13232 -31.96364 -28.56032 -28.19564 -28.10129 -25.98464 -25.02924 -23.76521 -22.76334 -21.98222 -21.37793 -20.44995 -20.11797 -19.72877 -19.54628 -19.41073 -18.62202 -17.96001 -17.85602 -17.44779 -17.29433 -16.88598 -16.69494 -16.37942 -16.25720 -16.19302 -16.03840 -15.87451 -15.63421 -15.57522 -15.39295 -15.27722 -14.95709 -14.85937 -14.77135 -14.54186 -14.07771 -14.02518 -13.80917 -13.77868 -13.54337 -13.36633 -13.15415 -12.75327 -12.69125 -11.97869 -11.56907 -11.29619 -11.08311 -5.82671 -1.76061 -1.48603 -1.31378 -0.75278 0.31752 0.46249 0.50968 0.67764 0.70481 0.75942 1.04222 1.25276 1.33882 1.35694 1.56544 1.63578 1.72641 1.75216 1.80535 1.90206 1.94401 2.03334 2.15499 2.20836 2.24367 2.26608 2.29938 2.33998 2.66514 2.76722 2.83240 2.85366 2.88926 2.92487 3.05196 3.12906 3.21521 3.32627 3.34391 3.43408 3.65094 3.69804 3.87097 3.98828 4.04289 4.34532 4.57807 4.73850 5.41621 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.010156 B = 0.004639 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.228079 B = 6034.925262 C = 7932.989653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 H 0.426 0.574 4 C -0.048 4.048 5 C 0.000 4.000 6 C -0.148 4.148 7 H 0.114 0.886 8 C -0.127 4.127 9 C 0.129 3.871 10 H 0.118 0.882 11 N -1.102 6.102 12 S 2.693 3.307 13 O -0.944 6.944 14 O -0.946 6.946 15 C -0.677 4.677 16 C -0.021 4.021 17 C -0.112 4.112 18 C -0.010 4.010 19 C -0.088 4.088 20 O -0.538 6.538 21 Si 0.687 3.313 22 C -0.136 4.136 23 C -0.014 4.014 24 C -0.165 4.165 25 H 0.122 0.878 26 H 0.123 0.877 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.419 0.581 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.087 0.913 39 H 0.387 0.613 40 H -0.255 1.255 41 H -0.254 1.254 42 H 0.139 0.861 43 H 0.146 0.854 44 H 0.089 0.911 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.092 -4.794 21.141 24.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 N 0.039 4.961 3 H 0.261 0.739 4 C -0.190 4.190 5 C -0.122 4.122 6 C -0.167 4.167 7 H 0.132 0.868 8 C -0.167 4.167 9 C 0.020 3.980 10 H 0.136 0.864 11 N -0.859 5.859 12 S 2.783 3.217 13 O -0.934 6.934 14 O -0.936 6.936 15 C -0.764 4.764 16 C -0.040 4.040 17 C -0.131 4.131 18 C -0.010 4.010 19 C -0.197 4.197 20 O -0.346 6.346 21 Si 0.587 3.413 22 C -0.155 4.155 23 C -0.033 4.033 24 C -0.204 4.204 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.254 0.746 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.104 0.896 39 H 0.236 0.764 40 H -0.179 1.179 41 H -0.179 1.179 42 H 0.156 0.844 43 H 0.163 0.837 44 H 0.107 0.893 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.430 -4.470 20.797 24.149 hybrid contribution -0.881 -0.548 1.242 1.618 sum 10.549 -5.019 22.039 24.944 Atomic orbital electron populations 1.24317 0.75996 1.09757 1.09726 1.45090 1.16386 1.18958 1.15705 0.73869 1.24141 1.05672 1.02461 0.86716 1.24131 1.05174 0.99897 0.82957 1.23275 0.99568 1.00887 0.92927 0.86831 1.23306 0.98086 1.03268 0.92022 1.21527 0.97206 0.84371 0.94900 0.86437 1.55548 1.64951 1.15410 1.50006 1.02093 0.73308 0.73701 0.72589 1.93648 1.81812 1.60539 1.57414 1.93657 1.86264 1.31465 1.82174 1.30882 1.25668 1.01460 1.18419 1.20974 0.95826 0.94736 0.92471 1.21203 0.93576 0.99607 0.98669 1.19666 0.94005 0.93647 0.93706 1.24932 0.97510 1.04697 0.92603 1.86492 1.33633 1.64554 1.49900 0.94608 0.79110 0.79750 0.87790 1.21206 0.95823 0.96638 1.01794 1.20868 0.93366 0.97836 0.91206 1.23965 0.95220 1.03866 0.97358 0.85926 0.85885 0.85552 0.85801 0.85762 0.85983 0.85010 0.84878 0.87334 0.88711 0.74599 0.83948 0.84513 0.89556 0.76434 1.17907 1.17886 0.84394 0.83652 0.89284 0.87600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 1.74 8.57 60.07 0.51 2.26 16 2 N -0.39 12.68 0.66 -251.26 -0.17 12.52 16 3 H 0.43 -14.71 8.40 -39.29 -0.33 -15.04 16 4 C -0.05 1.53 9.19 60.06 0.55 2.08 16 5 C 0.00 0.01 4.57 -3.82 -0.02 -0.01 16 6 C -0.15 3.99 3.13 -89.66 -0.28 3.71 16 7 H 0.11 -3.17 8.08 -51.93 -0.42 -3.59 16 8 C -0.13 2.88 7.42 -25.92 -0.19 2.69 16 9 C 0.13 -2.57 4.50 -67.12 -0.30 -2.87 16 10 H 0.12 -2.19 7.76 -51.93 -0.40 -2.60 16 11 N -1.10 19.25 5.73 -4.20 -0.02 19.22 16 12 S 2.69 -31.37 5.71 -107.50 -0.61 -31.98 16 13 O -0.94 7.47 16.80 -57.17 -0.96 6.51 16 14 O -0.95 7.47 17.28 -57.17 -0.99 6.48 16 15 C -0.68 8.05 5.95 -39.59 -0.24 7.81 16 16 C -0.02 0.25 9.52 -39.59 -0.38 -0.13 16 17 C -0.11 1.23 9.69 -39.58 -0.38 0.85 16 18 C -0.01 0.10 5.38 -104.62 -0.56 -0.46 16 19 C -0.09 0.97 2.79 36.01 0.10 1.07 16 20 O -0.54 5.68 12.81 -35.23 -0.45 5.22 16 21 Si 0.69 -7.52 29.85 -169.99 -5.07 -12.59 16 22 C -0.14 1.54 8.67 -39.58 -0.34 1.20 16 23 C -0.01 0.16 9.52 -39.58 -0.38 -0.22 16 24 C -0.16 3.99 5.71 -25.78 -0.15 3.84 16 25 H 0.12 -3.76 8.11 -51.93 -0.42 -4.19 16 26 H 0.12 -3.81 8.14 -51.93 -0.42 -4.23 16 27 H 0.13 -3.79 5.14 -51.93 -0.27 -4.06 16 28 H 0.12 -3.92 8.11 -51.93 -0.42 -4.34 16 29 H 0.12 -3.92 8.14 -51.93 -0.42 -4.34 16 30 H 0.12 -3.82 8.14 -51.93 -0.42 -4.24 16 31 H 0.13 -4.06 7.80 -51.93 -0.41 -4.46 16 32 H 0.13 -4.13 8.09 -51.93 -0.42 -4.55 16 33 H 0.11 -2.52 8.10 -51.93 -0.42 -2.94 16 34 H 0.09 -2.00 8.14 -51.93 -0.42 -2.42 16 35 H 0.42 -8.23 8.81 -34.47 -0.30 -8.53 16 36 H 0.14 -1.89 7.62 -52.48 -0.40 -2.29 16 37 H 0.14 -1.61 8.06 -52.49 -0.42 -2.03 16 38 H 0.09 -1.03 7.96 -51.93 -0.41 -1.45 16 39 H 0.39 -5.27 8.74 45.56 0.40 -4.88 16 40 H -0.25 2.06 7.11 56.52 0.40 2.46 16 41 H -0.25 2.26 7.05 56.52 0.40 2.66 16 42 H 0.14 -1.74 4.87 -52.49 -0.26 -2.00 16 43 H 0.15 -1.92 7.62 -52.49 -0.40 -2.32 16 44 H 0.09 -2.11 7.19 -51.93 -0.37 -2.49 16 45 H 0.11 -2.66 7.91 -51.93 -0.41 -3.07 16 LS Contribution 368.56 15.07 5.55 5.55 Total: 1.00 -40.43 368.56 -11.76 -52.18 By element: Atomic # 1 Polarization: -77.95 SS G_CDS: -6.98 Total: -84.93 kcal Atomic # 6 Polarization: 23.87 SS G_CDS: -2.05 Total: 21.82 kcal Atomic # 7 Polarization: 31.93 SS G_CDS: -0.19 Total: 31.74 kcal Atomic # 8 Polarization: 20.61 SS G_CDS: -2.40 Total: 18.21 kcal Atomic # 14 Polarization: -7.52 SS G_CDS: -5.07 Total: -12.59 kcal Atomic # 16 Polarization: -31.37 SS G_CDS: -0.61 Total: -31.98 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -40.43 -11.76 -52.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607760_13421422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.409 kcal (2) G-P(sol) polarization free energy of solvation -40.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds