Wall clock time and date at job start Mon Mar 8 2021 10:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 H 1.00896 * 109.46896 * 2 1 4 4 C 1.46898 * 109.46978 * 120.00043 * 2 1 3 5 5 C 1.46898 * 109.47075 * 240.00031 * 2 1 3 6 6 C 1.53003 * 109.47368 * 64.99770 * 5 2 1 7 7 H 1.09006 * 112.84547 * 43.80525 * 6 5 2 8 8 C 1.53785 * 113.61350 * 174.99807 * 6 5 2 9 9 C 1.53777 * 87.07678 * 140.06767 * 8 6 5 10 10 H 1.08998 * 113.61734 * 219.93380 * 9 8 6 11 11 N 1.46506 * 113.61372 * 89.11772 * 9 8 6 12 12 S 1.65602 * 120.00166 * 146.52679 * 11 9 8 13 13 O 1.42105 * 106.40176 * 311.46127 * 12 11 9 14 14 O 1.42095 * 106.40125 * 178.53983 * 12 11 9 15 15 C 1.76205 * 107.21590 * 64.99795 * 12 11 9 16 16 C 1.38228 * 120.00115 * 270.21437 * 15 12 11 17 17 C 1.38238 * 120.00114 * 180.26081 * 16 15 12 18 18 C 1.38234 * 119.99675 * 359.50218 * 17 16 15 19 19 C 1.50702 * 120.00257 * 180.25732 * 18 17 16 20 20 O 1.42905 * 109.46880 * 65.00285 * 19 18 17 21 21 Si 1.86296 * 109.47619 * 185.00353 * 19 18 17 22 22 C 1.38235 * 120.00220 * 0.28720 * 18 17 16 23 23 C 1.38234 * 119.99800 * 90.00128 * 15 12 11 24 24 C 1.53778 * 87.17731 * 334.52841 * 9 8 6 25 25 H 1.09001 * 109.47102 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47101 * 300.00145 * 1 2 3 27 27 H 1.09004 * 109.46958 * 60.00366 * 1 2 3 28 28 H 1.08997 * 109.47183 * 179.97438 * 4 2 1 29 29 H 1.09003 * 109.47251 * 300.00093 * 4 2 1 30 30 H 1.09001 * 109.47256 * 60.00031 * 4 2 1 31 31 H 1.09000 * 109.47229 * 304.99846 * 5 2 1 32 32 H 1.09001 * 109.47346 * 185.00135 * 5 2 1 33 33 H 1.09000 * 113.61227 * 25.52344 * 8 6 5 34 34 H 1.09001 * 113.61058 * 254.61840 * 8 6 5 35 35 H 0.97002 * 119.99688 * 326.52345 * 11 9 8 36 36 H 1.08004 * 120.00270 * 0.03482 * 16 15 12 37 37 H 1.08002 * 120.00519 * 179.78838 * 17 16 15 38 38 H 1.08996 * 109.47264 * 305.00948 * 19 18 17 39 39 H 0.96696 * 114.00393 * 180.02562 * 20 19 18 40 40 H 1.48495 * 110.00079 * 178.68631 * 21 19 18 41 41 H 1.48504 * 109.99525 * 300.00265 * 21 19 18 42 42 H 1.07996 * 120.00471 * 179.97438 * 22 18 17 43 43 H 1.08001 * 120.00294 * 0.02562 * 23 15 12 44 44 H 1.08993 * 113.61730 * 140.02642 * 24 9 8 45 45 H 1.09004 * 113.60780 * 270.92699 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9587 -0.6925 1.1994 5 6 1.9587 -0.6925 -1.1994 6 6 1.5539 0.0976 -2.4456 7 1 1.7120 1.1706 -2.3362 8 6 2.1235 -0.4789 -3.7525 9 6 0.7631 -0.1592 -4.3942 10 1 0.4123 -0.9296 -5.0809 11 7 0.6848 1.1885 -4.9633 12 16 -0.2248 1.4631 -6.3196 13 8 0.1369 0.4571 -7.2558 14 8 -0.1247 2.8535 -6.5951 15 6 -1.9067 1.1609 -5.8895 16 6 -2.4398 -0.1063 -6.0331 17 6 -3.7607 -0.3422 -5.7008 18 6 -4.5456 0.6869 -5.2152 19 6 -5.9840 0.4285 -4.8474 20 8 -6.0381 -0.4763 -3.7427 21 14 -6.8025 2.0342 -4.3756 22 6 -4.0113 1.9532 -5.0675 23 6 -2.6917 2.1901 -5.4044 24 6 0.1581 -0.2687 -2.9846 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.0486 -0.6929 1.1992 29 1 1.5953 -0.1787 2.0894 30 1 1.5953 -1.7202 1.1994 31 1 1.5241 -1.6910 -1.2453 32 1 3.0450 -0.7707 -1.1558 33 1 2.3419 -1.5455 -3.7005 34 1 2.9480 0.1035 -4.1638 35 1 1.1659 1.9200 -4.5456 36 1 -1.8254 -0.9114 -6.4083 37 1 -4.1783 -1.3316 -5.8161 38 1 -6.5044 -0.0077 -5.7001 39 1 -6.9354 -0.6886 -3.4516 40 1 -8.2299 1.7976 -4.0413 41 1 -6.1023 2.6390 -3.2140 42 1 -4.6245 2.7573 -4.6886 43 1 -2.2743 3.1796 -5.2894 44 1 -0.6030 0.4832 -2.7765 45 1 -0.1598 -1.2780 -2.7232 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607760_13421422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:34:10 Heat of formation + Delta-G solvation = 56.852221 kcal Electronic energy + Delta-G solvation = -27005.145930 eV Core-core repulsion = 23235.731963 eV Total energy + Delta-G solvation = -3769.413967 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.17396 -40.66485 -39.74605 -38.45068 -37.84276 -37.08568 -34.14811 -33.19575 -32.23177 -29.92116 -29.49515 -27.28536 -26.61844 -25.81380 -24.16394 -23.80738 -22.85790 -21.11807 -20.56945 -19.42715 -18.96983 -18.66967 -18.55287 -17.75442 -17.37472 -17.24739 -16.97610 -16.72887 -16.08836 -15.79517 -15.45063 -15.41507 -15.16102 -14.65182 -14.48355 -14.31079 -14.02862 -13.95999 -13.83667 -13.63806 -13.54298 -13.37077 -13.30928 -13.29126 -13.17032 -13.10928 -12.94412 -12.84187 -12.47088 -12.00330 -11.95887 -11.93282 -11.62152 -11.31624 -10.71231 -10.52269 -10.36981 -10.16709 -4.98452 -0.80201 -0.42003 0.16357 1.03874 1.17700 1.50366 1.82847 1.85829 2.27569 2.67312 2.89556 2.97478 3.14550 3.17409 3.22612 3.37993 3.50158 3.62645 3.69947 3.73577 3.77559 3.81803 4.02343 4.13897 4.17025 4.19781 4.21893 4.27207 4.35518 4.36708 4.40500 4.52136 4.57400 4.72502 4.75636 4.81370 4.81686 4.82453 4.86859 4.90798 4.94797 4.96118 5.02303 5.13384 5.25305 5.42440 5.66213 6.03157 6.43642 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.010156 B = 0.004639 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.228079 B = 6034.925262 C = 7932.989653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.369 5.369 3 H 0.438 0.562 4 C -0.046 4.046 5 C 0.008 3.992 6 C -0.125 4.125 7 H 0.127 0.873 8 C -0.131 4.131 9 C 0.094 3.906 10 H 0.097 0.903 11 N -1.083 6.083 12 S 2.709 3.291 13 O -0.989 6.989 14 O -0.988 6.988 15 C -0.673 4.673 16 C -0.023 4.023 17 C -0.120 4.120 18 C -0.022 4.022 19 C -0.088 4.088 20 O -0.550 6.550 21 Si 0.745 3.255 22 C -0.143 4.143 23 C -0.018 4.018 24 C -0.157 4.157 25 H 0.121 0.879 26 H 0.124 0.876 27 H 0.118 0.882 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.431 0.569 36 H 0.151 0.849 37 H 0.142 0.858 38 H 0.097 0.903 39 H 0.398 0.602 40 H -0.294 1.294 41 H -0.281 1.281 42 H 0.148 0.852 43 H 0.157 0.843 44 H 0.088 0.912 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.848 -5.160 23.094 26.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 N 0.054 4.946 3 H 0.275 0.725 4 C -0.188 4.188 5 C -0.114 4.114 6 C -0.143 4.143 7 H 0.145 0.855 8 C -0.171 4.171 9 C -0.014 4.014 10 H 0.115 0.885 11 N -0.846 5.846 12 S 2.800 3.200 13 O -0.978 6.978 14 O -0.978 6.978 15 C -0.761 4.761 16 C -0.042 4.042 17 C -0.139 4.139 18 C -0.023 4.023 19 C -0.198 4.198 20 O -0.360 6.360 21 Si 0.651 3.349 22 C -0.161 4.161 23 C -0.037 4.037 24 C -0.196 4.196 25 H 0.140 0.860 26 H 0.143 0.857 27 H 0.136 0.864 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.157 0.843 32 H 0.164 0.836 33 H 0.134 0.866 34 H 0.097 0.903 35 H 0.269 0.731 36 H 0.169 0.831 37 H 0.160 0.840 38 H 0.115 0.885 39 H 0.249 0.751 40 H -0.221 1.221 41 H -0.208 1.208 42 H 0.166 0.834 43 H 0.175 0.825 44 H 0.106 0.894 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.205 -4.822 22.744 26.258 hybrid contribution -1.128 -0.483 0.688 1.407 sum 11.077 -5.305 23.431 26.455 Atomic orbital electron populations 1.24286 0.76798 1.09635 1.09381 1.44834 1.15510 1.19518 1.14709 0.72511 1.24115 1.05759 1.02321 0.86617 1.23940 1.05964 0.99513 0.81947 1.23055 0.96386 1.01994 0.92887 0.85496 1.23308 0.95862 1.03776 0.94181 1.21994 1.00496 0.82262 0.96605 0.88520 1.54985 1.63785 1.17113 1.48689 1.01189 0.73535 0.72016 0.73211 1.93590 1.82603 1.61430 1.60217 1.93590 1.86946 1.33567 1.83738 1.30797 1.25386 1.01571 1.18335 1.21110 0.95821 0.95055 0.92243 1.21320 0.93775 0.99890 0.98872 1.19805 0.94314 0.94014 0.94137 1.24959 0.97424 1.04467 0.92903 1.86463 1.34929 1.64556 1.50092 0.93925 0.75648 0.78965 0.86399 1.21353 0.96088 0.96788 1.01879 1.21058 0.93332 0.98368 0.90954 1.23953 0.96782 1.04782 0.94101 0.86020 0.85726 0.86373 0.85547 0.85855 0.86317 0.84334 0.83617 0.86646 0.90283 0.73097 0.83106 0.84001 0.88512 0.75061 1.22140 1.20753 0.83441 0.82508 0.89353 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 3.62 8.57 127.69 1.09 4.72 16 2 N -0.37 24.35 0.66 -948.84 -0.62 23.73 16 3 H 0.44 -30.45 8.40 -89.70 -0.75 -31.20 16 4 C -0.05 2.95 9.19 127.69 1.17 4.12 16 5 C 0.01 -0.51 4.57 86.30 0.39 -0.11 16 6 C -0.12 6.70 3.13 -10.17 -0.03 6.67 16 7 H 0.13 -7.14 8.08 -2.38 -0.02 -7.16 16 8 C -0.13 5.77 7.42 31.12 0.23 6.00 16 9 C 0.09 -3.54 4.50 45.51 0.20 -3.34 16 10 H 0.10 -3.28 7.76 -2.39 -0.02 -3.29 16 11 N -1.08 35.26 5.73 -167.19 -0.96 34.30 16 12 S 2.71 -54.90 5.71 -56.49 -0.32 -55.22 16 13 O -0.99 12.06 16.80 -128.00 -2.15 9.91 16 14 O -0.99 12.62 17.28 -128.00 -2.21 10.41 16 15 C -0.67 14.43 5.95 22.27 0.13 14.57 16 16 C -0.02 0.50 9.52 22.27 0.21 0.71 16 17 C -0.12 2.45 9.69 22.27 0.22 2.67 16 18 C -0.02 0.45 5.38 -19.87 -0.11 0.34 16 19 C -0.09 1.85 2.79 71.24 0.20 2.05 16 20 O -0.55 11.08 12.81 -148.98 -1.91 9.17 16 21 Si 0.75 -15.19 29.85 68.60 2.05 -13.14 16 22 C -0.14 3.03 8.67 22.27 0.19 3.22 16 23 C -0.02 0.39 9.52 22.27 0.21 0.60 16 24 C -0.16 7.46 5.71 31.21 0.18 7.63 16 25 H 0.12 -7.43 8.11 -2.39 -0.02 -7.45 16 26 H 0.12 -7.66 8.14 -2.39 -0.02 -7.68 16 27 H 0.12 -7.04 5.14 -2.39 -0.01 -7.05 16 28 H 0.13 -8.04 8.11 -2.39 -0.02 -8.06 16 29 H 0.12 -7.75 8.14 -2.39 -0.02 -7.77 16 30 H 0.12 -7.41 8.14 -2.39 -0.02 -7.43 16 31 H 0.14 -8.63 7.80 -2.39 -0.02 -8.65 16 32 H 0.15 -9.21 8.09 -2.39 -0.02 -9.22 16 33 H 0.12 -5.23 8.10 -2.39 -0.02 -5.25 16 34 H 0.08 -3.18 8.14 -2.39 -0.02 -3.20 16 35 H 0.43 -16.11 8.81 -96.74 -0.85 -16.96 16 36 H 0.15 -3.61 7.62 -2.91 -0.02 -3.63 16 37 H 0.14 -3.14 8.06 -2.91 -0.02 -3.16 16 38 H 0.10 -2.25 7.96 -2.39 -0.02 -2.27 16 39 H 0.40 -10.47 8.74 -74.06 -0.65 -11.12 16 40 H -0.29 4.08 7.11 99.48 0.71 4.79 16 41 H -0.28 4.52 7.05 99.48 0.70 5.22 16 42 H 0.15 -3.53 4.87 -2.91 -0.01 -3.55 16 43 H 0.16 -3.87 7.62 -2.91 -0.02 -3.89 16 44 H 0.09 -4.11 7.19 -2.39 -0.02 -4.13 16 45 H 0.12 -5.92 7.91 -2.38 -0.02 -5.94 16 Total: 1.00 -86.01 368.56 -3.03 -89.04 By element: Atomic # 1 Polarization: -156.85 SS G_CDS: -1.21 Total: -158.06 kcal Atomic # 6 Polarization: 45.54 SS G_CDS: 4.30 Total: 49.85 kcal Atomic # 7 Polarization: 59.61 SS G_CDS: -1.58 Total: 58.03 kcal Atomic # 8 Polarization: 35.77 SS G_CDS: -6.27 Total: 29.50 kcal Atomic # 14 Polarization: -15.19 SS G_CDS: 2.05 Total: -13.14 kcal Atomic # 16 Polarization: -54.90 SS G_CDS: -0.32 Total: -55.22 kcal Total: -86.01 -3.03 -89.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607760_13421422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.897 kcal (2) G-P(sol) polarization free energy of solvation -86.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds