Wall clock time and date at job start Mon Mar 8 2021 10:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 H 1.00906 * 109.47112 * 2 1 4 4 C 1.46894 * 109.47081 * 119.99864 * 2 1 3 5 5 C 1.46901 * 109.47092 * 240.00426 * 2 1 3 6 6 C 1.52990 * 109.47276 * 64.99475 * 5 2 1 7 7 H 1.09000 * 112.90908 * 43.75450 * 6 5 2 8 8 C 1.53786 * 113.61464 * 175.00079 * 6 5 2 9 9 C 1.53781 * 87.17350 * 140.02626 * 8 6 5 10 10 H 1.08998 * 113.61196 * 219.97759 * 9 8 6 11 11 N 1.46505 * 113.61334 * 89.07333 * 9 8 6 12 12 S 1.65600 * 119.99719 * 145.00157 * 11 9 8 13 13 O 1.42100 * 106.40110 * 178.54169 * 12 11 9 14 14 O 1.42109 * 106.40273 * 311.46022 * 12 11 9 15 15 C 1.76195 * 107.22188 * 65.00034 * 12 11 9 16 16 C 1.33389 * 125.20589 * 179.71898 * 15 12 11 17 17 C 1.50691 * 122.53847 * 0.02562 * 16 15 12 18 18 O 1.42906 * 109.47158 * 74.99884 * 17 16 15 19 19 Si 1.86302 * 109.47347 * 194.99974 * 17 16 15 20 20 C 1.38424 * 114.92011 * 179.86027 * 16 15 12 21 21 C 1.33388 * 114.92211 * 0.42768 * 20 16 15 22 22 S 1.75886 * 109.59310 * 359.77421 * 21 20 16 23 23 C 1.53781 * 87.08070 * 334.52830 * 9 8 6 24 24 H 1.09001 * 109.47292 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46999 * 299.99922 * 1 2 3 26 26 H 1.09002 * 109.47028 * 59.99466 * 1 2 3 27 27 H 1.09003 * 109.47106 * 180.02562 * 4 2 1 28 28 H 1.08999 * 109.47787 * 300.00209 * 4 2 1 29 29 H 1.09005 * 109.47185 * 60.00624 * 4 2 1 30 30 H 1.09007 * 109.46470 * 304.99885 * 5 2 1 31 31 H 1.08994 * 109.47025 * 185.00260 * 5 2 1 32 32 H 1.09002 * 113.61357 * 25.43543 * 8 6 5 33 33 H 1.09002 * 113.61608 * 254.61705 * 8 6 5 34 34 H 0.97000 * 120.00119 * 325.00329 * 11 9 8 35 35 H 1.08999 * 109.47334 * 315.00029 * 17 16 15 36 36 H 0.96697 * 113.99767 * 60.00150 * 18 17 16 37 37 H 1.48495 * 110.00081 * 180.02562 * 19 17 16 38 38 H 1.48500 * 109.99903 * 301.32514 * 19 17 16 39 39 H 1.07996 * 122.53881 * 180.20053 * 20 16 15 40 40 H 1.08005 * 125.20625 * 179.78641 * 21 20 16 41 41 H 1.09005 * 113.61471 * 139.98321 * 23 9 8 42 42 H 1.08996 * 113.61178 * 270.79663 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8054 0.9514 0.0000 4 6 1.9587 -0.6924 1.1994 5 6 1.9587 -0.6924 -1.1995 6 6 1.5538 0.0977 -2.4455 7 1 1.7106 1.1709 -2.3368 8 6 2.1234 -0.4787 -3.7525 9 6 0.7633 -0.1610 -4.3960 10 1 0.4140 -0.9327 -5.0820 11 7 0.6840 1.1866 -4.9654 12 16 -0.1935 1.4525 -6.3444 13 8 -0.1026 2.8443 -6.6157 14 8 0.2041 0.4521 -7.2722 15 6 -1.8821 1.1300 -5.9584 16 6 -2.9007 1.2394 -6.8128 17 6 -2.7139 1.6634 -8.2467 18 8 -2.1536 0.5818 -8.9941 19 14 -4.3628 2.1333 -8.9753 20 6 -4.1418 0.9305 -6.2833 21 6 -4.1323 0.5789 -4.9966 22 16 -2.4835 0.6220 -4.3856 23 6 0.1591 -0.2705 -2.9861 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.0487 -0.6920 1.1996 28 1 1.5953 -0.1787 2.0894 29 1 1.5954 -1.7202 1.1994 30 1 1.5240 -1.6910 -1.2454 31 1 3.0449 -0.7707 -1.1558 32 1 2.3432 -1.5451 -3.7001 33 1 2.9478 0.1036 -4.1639 34 1 1.1455 1.9230 -4.5346 35 1 -2.0412 2.5201 -8.2876 36 1 -2.7001 -0.2159 -9.0013 37 1 -4.1923 2.5527 -10.3895 38 1 -5.2992 0.9833 -8.8964 39 1 -5.0495 0.9746 -6.8667 40 1 -5.0037 0.3089 -4.4185 41 1 -0.6024 0.4810 -2.7778 42 1 -0.1594 -1.2796 -2.7249 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607760_13652106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:34:15 Heat of formation + Delta-G solvation = 100.196297 kcal Electronic energy + Delta-G solvation = -25949.686396 eV Core-core repulsion = 22271.304215 eV Total energy + Delta-G solvation = -3678.382181 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.098 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -44.58714 -41.75887 -40.99536 -39.11569 -38.03390 -37.77202 -35.77926 -32.46274 -32.15108 -31.99180 -28.95954 -28.60434 -28.18265 -26.01400 -25.29401 -22.90226 -22.64233 -21.63498 -21.05756 -20.77047 -20.20773 -19.78655 -19.51173 -19.02956 -18.61008 -17.64673 -17.58029 -17.34067 -17.23140 -16.86857 -16.77437 -16.37046 -16.22804 -16.16837 -16.06933 -15.89292 -15.66987 -15.47392 -15.13021 -15.07338 -14.89580 -14.58216 -14.39063 -14.06144 -13.99027 -13.90252 -13.75271 -13.54934 -13.34319 -13.16777 -13.08425 -12.43934 -12.07463 -11.54912 -11.40042 -10.70680 -5.72750 -1.76654 -1.65882 -1.50952 -0.83080 -0.46843 0.28375 0.39227 0.43704 0.48411 0.65481 0.74220 0.81501 1.21629 1.24564 1.31993 1.51128 1.61146 1.63687 1.71891 1.76873 1.87887 1.90333 2.00017 2.13120 2.21485 2.25242 2.26999 2.42056 2.52317 2.55841 2.78111 2.82514 2.87113 2.99109 3.02872 3.05808 3.17425 3.32533 3.45206 3.64474 3.71910 3.89755 4.06447 4.51602 5.55070 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.021205 B = 0.004127 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.146070 B = 6782.942990 C = 7643.764935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.386 5.386 3 H 0.427 0.573 4 C -0.048 4.048 5 C 0.000 4.000 6 C -0.147 4.147 7 H 0.115 0.885 8 C -0.125 4.125 9 C 0.123 3.877 10 H 0.121 0.879 11 N -1.104 6.104 12 S 2.715 3.285 13 O -0.939 6.939 14 O -0.918 6.918 15 C -0.767 4.767 16 C 0.019 3.981 17 C -0.108 4.108 18 O -0.507 6.507 19 Si 0.709 3.291 20 C -0.160 4.160 21 C -0.156 4.156 22 S 0.174 5.826 23 C -0.169 4.169 24 H 0.123 0.877 25 H 0.124 0.876 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.421 0.579 35 H 0.129 0.871 36 H 0.380 0.620 37 H -0.244 1.244 38 H -0.251 1.251 39 H 0.160 0.840 40 H 0.180 0.820 41 H 0.089 0.911 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.522 -5.314 28.090 29.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 N 0.038 4.962 3 H 0.262 0.738 4 C -0.190 4.190 5 C -0.122 4.122 6 C -0.165 4.165 7 H 0.133 0.867 8 C -0.165 4.165 9 C 0.014 3.986 10 H 0.139 0.861 11 N -0.863 5.863 12 S 2.799 3.201 13 O -0.929 6.929 14 O -0.907 6.907 15 C -0.966 4.966 16 C 0.002 3.998 17 C -0.219 4.219 18 O -0.314 6.314 19 Si 0.607 3.393 20 C -0.190 4.190 21 C -0.292 4.292 22 S 0.439 5.561 23 C -0.209 4.209 24 H 0.141 0.859 25 H 0.142 0.858 26 H 0.144 0.856 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.140 0.860 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.128 0.872 33 H 0.114 0.886 34 H 0.256 0.744 35 H 0.147 0.853 36 H 0.228 0.772 37 H -0.168 1.168 38 H -0.176 1.176 39 H 0.177 0.823 40 H 0.197 0.803 41 H 0.107 0.893 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.157 -5.523 27.912 29.599 hybrid contribution -0.755 -0.390 -0.628 1.057 sum 7.402 -5.912 27.284 28.882 Atomic orbital electron populations 1.24325 0.76078 1.09762 1.09737 1.45090 1.16362 1.19007 1.15700 0.73812 1.24146 1.05708 1.02458 0.86695 1.24129 1.05280 0.99879 0.82871 1.23266 0.99236 1.01021 0.93019 0.86681 1.23297 0.97956 1.03395 0.91869 1.21619 0.97611 0.84338 0.95016 0.86115 1.55592 1.66545 1.15308 1.48814 1.01782 0.72062 0.74195 0.72094 1.93669 1.85855 1.31427 1.81936 1.93696 1.79741 1.60587 1.56725 1.35600 1.28422 1.26582 1.06037 1.19081 0.91524 0.92552 0.96647 1.25373 1.14159 0.94024 0.88327 1.86804 1.48319 1.24162 1.72070 0.94609 0.73909 0.87074 0.83724 1.20452 0.98655 1.03988 0.95876 1.26176 1.01192 1.02910 0.98945 1.83406 0.99710 1.65073 1.07918 1.24080 0.95248 1.04113 0.97410 0.85880 0.85800 0.85597 0.85797 0.85734 0.85958 0.84914 0.84788 0.87196 0.88617 0.74366 0.85347 0.77164 1.16817 1.17569 0.82258 0.80255 0.89263 0.87026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 1.83 8.57 60.07 0.51 2.35 16 2 N -0.39 12.95 0.66 -251.26 -0.17 12.78 16 3 H 0.43 -14.99 8.41 -39.29 -0.33 -15.32 16 4 C -0.05 1.57 9.19 60.06 0.55 2.12 16 5 C 0.00 0.01 4.57 -3.83 -0.02 -0.01 16 6 C -0.15 4.01 3.13 -89.67 -0.28 3.73 16 7 H 0.12 -3.26 8.06 -51.93 -0.42 -3.68 16 8 C -0.13 2.84 7.42 -25.92 -0.19 2.65 16 9 C 0.12 -2.41 3.90 -67.11 -0.26 -2.67 16 10 H 0.12 -2.15 7.77 -51.93 -0.40 -2.55 16 11 N -1.10 18.33 5.54 -4.20 -0.02 18.31 16 12 S 2.71 -27.20 5.04 -107.50 -0.54 -27.74 16 13 O -0.94 6.08 17.48 -57.17 -1.00 5.09 16 14 O -0.92 5.64 16.98 -59.41 -1.01 4.63 16 15 C -0.77 8.43 6.46 29.04 0.19 8.62 16 16 C 0.02 -0.18 5.13 -106.25 -0.55 -0.73 16 17 C -0.11 0.85 2.33 36.00 0.08 0.94 16 18 O -0.51 3.20 12.32 -35.88 -0.44 2.76 16 19 Si 0.71 -6.43 30.47 -169.99 -5.18 -11.61 16 20 C -0.16 1.83 8.74 -41.21 -0.36 1.47 16 21 C -0.16 2.09 11.23 29.04 0.33 2.42 16 22 S 0.17 -2.69 19.55 -107.50 -2.10 -4.79 16 23 C -0.17 4.15 4.65 -25.78 -0.12 4.03 16 24 H 0.12 -3.93 8.11 -51.93 -0.42 -4.35 16 25 H 0.12 -3.97 8.14 -51.93 -0.42 -4.39 16 26 H 0.13 -3.93 5.14 -51.93 -0.27 -4.19 16 27 H 0.12 -3.98 8.11 -51.93 -0.42 -4.40 16 28 H 0.12 -4.00 8.14 -51.93 -0.42 -4.43 16 29 H 0.12 -3.91 8.14 -51.93 -0.42 -4.33 16 30 H 0.13 -4.18 7.80 -51.93 -0.41 -4.59 16 31 H 0.13 -4.22 8.09 -51.93 -0.42 -4.64 16 32 H 0.11 -2.57 8.10 -51.93 -0.42 -2.99 16 33 H 0.10 -2.01 8.14 -51.93 -0.42 -2.43 16 34 H 0.42 -8.02 8.78 -34.47 -0.30 -8.33 16 35 H 0.13 -0.96 7.23 -51.93 -0.38 -1.34 16 36 H 0.38 -3.74 8.70 45.56 0.40 -3.35 16 37 H -0.24 1.30 7.11 56.52 0.40 1.70 16 38 H -0.25 2.09 6.80 56.52 0.38 2.47 16 39 H 0.16 -1.97 5.54 -52.49 -0.29 -2.26 16 40 H 0.18 -2.84 8.06 -52.48 -0.42 -3.27 16 41 H 0.09 -2.19 5.30 -51.93 -0.28 -2.47 16 42 H 0.11 -2.92 7.91 -51.93 -0.41 -3.33 16 LS Contribution 350.95 15.07 5.29 5.29 Total: 1.00 -41.44 350.95 -11.38 -52.82 By element: Atomic # 1 Polarization: -76.36 SS G_CDS: -6.09 Total: -82.46 kcal Atomic # 6 Polarization: 25.03 SS G_CDS: -0.11 Total: 24.92 kcal Atomic # 7 Polarization: 31.28 SS G_CDS: -0.19 Total: 31.09 kcal Atomic # 8 Polarization: 14.92 SS G_CDS: -2.45 Total: 12.47 kcal Atomic # 14 Polarization: -6.43 SS G_CDS: -5.18 Total: -11.61 kcal Atomic # 16 Polarization: -29.89 SS G_CDS: -2.64 Total: -32.53 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -41.44 -11.38 -52.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607760_13652106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.016 kcal (2) G-P(sol) polarization free energy of solvation -41.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds