Wall clock time and date at job start Mon Mar 8 2021 10:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 H 1.00906 * 109.47112 * 2 1 4 4 C 1.46894 * 109.47081 * 119.99864 * 2 1 3 5 5 C 1.46901 * 109.47092 * 240.00426 * 2 1 3 6 6 C 1.52990 * 109.47276 * 64.99475 * 5 2 1 7 7 H 1.09000 * 112.90908 * 43.75450 * 6 5 2 8 8 C 1.53786 * 113.61464 * 175.00079 * 6 5 2 9 9 C 1.53781 * 87.17350 * 140.02626 * 8 6 5 10 10 H 1.08998 * 113.61196 * 219.97759 * 9 8 6 11 11 N 1.46505 * 113.61334 * 89.07333 * 9 8 6 12 12 S 1.65600 * 119.99719 * 145.00157 * 11 9 8 13 13 O 1.42100 * 106.40110 * 178.54169 * 12 11 9 14 14 O 1.42109 * 106.40273 * 311.46022 * 12 11 9 15 15 C 1.76195 * 107.22188 * 65.00034 * 12 11 9 16 16 C 1.33389 * 125.20589 * 179.71898 * 15 12 11 17 17 C 1.50691 * 122.53847 * 0.02562 * 16 15 12 18 18 O 1.42906 * 109.47158 * 74.99884 * 17 16 15 19 19 Si 1.86302 * 109.47347 * 194.99974 * 17 16 15 20 20 C 1.38424 * 114.92011 * 179.86027 * 16 15 12 21 21 C 1.33388 * 114.92211 * 0.42768 * 20 16 15 22 22 S 1.75886 * 109.59310 * 359.77421 * 21 20 16 23 23 C 1.53781 * 87.08070 * 334.52830 * 9 8 6 24 24 H 1.09001 * 109.47292 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46999 * 299.99922 * 1 2 3 26 26 H 1.09002 * 109.47028 * 59.99466 * 1 2 3 27 27 H 1.09003 * 109.47106 * 180.02562 * 4 2 1 28 28 H 1.08999 * 109.47787 * 300.00209 * 4 2 1 29 29 H 1.09005 * 109.47185 * 60.00624 * 4 2 1 30 30 H 1.09007 * 109.46470 * 304.99885 * 5 2 1 31 31 H 1.08994 * 109.47025 * 185.00260 * 5 2 1 32 32 H 1.09002 * 113.61357 * 25.43543 * 8 6 5 33 33 H 1.09002 * 113.61608 * 254.61705 * 8 6 5 34 34 H 0.97000 * 120.00119 * 325.00329 * 11 9 8 35 35 H 1.08999 * 109.47334 * 315.00029 * 17 16 15 36 36 H 0.96697 * 113.99767 * 60.00150 * 18 17 16 37 37 H 1.48495 * 110.00081 * 180.02562 * 19 17 16 38 38 H 1.48500 * 109.99903 * 301.32514 * 19 17 16 39 39 H 1.07996 * 122.53881 * 180.20053 * 20 16 15 40 40 H 1.08005 * 125.20625 * 179.78641 * 21 20 16 41 41 H 1.09005 * 113.61471 * 139.98321 * 23 9 8 42 42 H 1.08996 * 113.61178 * 270.79663 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8054 0.9514 0.0000 4 6 1.9587 -0.6924 1.1994 5 6 1.9587 -0.6924 -1.1995 6 6 1.5538 0.0977 -2.4455 7 1 1.7106 1.1709 -2.3368 8 6 2.1234 -0.4787 -3.7525 9 6 0.7633 -0.1610 -4.3960 10 1 0.4140 -0.9327 -5.0820 11 7 0.6840 1.1866 -4.9654 12 16 -0.1935 1.4525 -6.3444 13 8 -0.1026 2.8443 -6.6157 14 8 0.2041 0.4521 -7.2722 15 6 -1.8821 1.1300 -5.9584 16 6 -2.9007 1.2394 -6.8128 17 6 -2.7139 1.6634 -8.2467 18 8 -2.1536 0.5818 -8.9941 19 14 -4.3628 2.1333 -8.9753 20 6 -4.1418 0.9305 -6.2833 21 6 -4.1323 0.5789 -4.9966 22 16 -2.4835 0.6220 -4.3856 23 6 0.1591 -0.2705 -2.9861 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.0487 -0.6920 1.1996 28 1 1.5953 -0.1787 2.0894 29 1 1.5954 -1.7202 1.1994 30 1 1.5240 -1.6910 -1.2454 31 1 3.0449 -0.7707 -1.1558 32 1 2.3432 -1.5451 -3.7001 33 1 2.9478 0.1036 -4.1639 34 1 1.1455 1.9230 -4.5346 35 1 -2.0412 2.5201 -8.2876 36 1 -2.7001 -0.2159 -9.0013 37 1 -4.1923 2.5527 -10.3895 38 1 -5.2992 0.9833 -8.8964 39 1 -5.0495 0.9746 -6.8667 40 1 -5.0037 0.3089 -4.4185 41 1 -0.6024 0.4810 -2.7778 42 1 -0.1594 -1.2796 -2.7249 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607760_13652106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:34:14 Heat of formation + Delta-G solvation = 66.596514 kcal Electronic energy + Delta-G solvation = -25951.143392 eV Core-core repulsion = 22271.304215 eV Total energy + Delta-G solvation = -3679.839177 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.098 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.15405 -40.15861 -39.76949 -38.42708 -37.33889 -37.10277 -34.26744 -31.48599 -29.91944 -29.43864 -28.15712 -26.69685 -25.79101 -24.39694 -23.86226 -21.82326 -20.93813 -20.07495 -19.86076 -19.00800 -18.76566 -18.16185 -17.72438 -17.30733 -17.13064 -16.79682 -16.48354 -16.11229 -15.99633 -15.45998 -15.36677 -15.20740 -14.43927 -14.26816 -14.07322 -13.81236 -13.72271 -13.60703 -13.50305 -13.43223 -13.34277 -13.26770 -13.18125 -13.07256 -12.87198 -12.80951 -12.69635 -12.42352 -12.01955 -11.79277 -11.60474 -11.30386 -10.87446 -10.62873 -10.42475 -9.58163 -5.07131 -0.89376 -0.70384 0.20299 0.60902 1.07009 1.09022 1.22438 1.44478 1.82140 1.85931 2.46867 2.94070 3.00360 3.13592 3.22702 3.35994 3.40225 3.44188 3.49235 3.64688 3.79756 3.93909 4.00745 4.10044 4.20022 4.21779 4.24603 4.26827 4.40583 4.44686 4.53434 4.68759 4.75254 4.77040 4.81721 4.85108 4.90627 4.91757 4.93593 4.96747 5.02809 5.11442 5.39302 5.92684 6.28757 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.021205 B = 0.004127 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.146070 B = 6782.942990 C = 7643.764935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.370 5.370 3 H 0.438 0.562 4 C -0.046 4.046 5 C 0.008 3.992 6 C -0.121 4.121 7 H 0.129 0.871 8 C -0.131 4.131 9 C 0.084 3.916 10 H 0.094 0.906 11 N -1.085 6.085 12 S 2.720 3.280 13 O -0.989 6.989 14 O -0.973 6.973 15 C -0.799 4.799 16 C -0.002 4.002 17 C -0.126 4.126 18 O -0.535 6.535 19 Si 0.788 3.212 20 C -0.184 4.184 21 C -0.160 4.160 22 S 0.285 5.715 23 C -0.162 4.162 24 H 0.126 0.874 25 H 0.126 0.874 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.118 0.882 33 H 0.076 0.924 34 H 0.433 0.567 35 H 0.110 0.890 36 H 0.391 0.609 37 H -0.304 1.304 38 H -0.254 1.254 39 H 0.163 0.837 40 H 0.209 0.791 41 H 0.094 0.906 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.178 -6.342 32.657 34.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 N 0.053 4.947 3 H 0.275 0.725 4 C -0.188 4.188 5 C -0.114 4.114 6 C -0.140 4.140 7 H 0.147 0.853 8 C -0.171 4.171 9 C -0.024 4.024 10 H 0.112 0.888 11 N -0.849 5.849 12 S 2.808 3.192 13 O -0.979 6.979 14 O -0.962 6.962 15 C -1.001 5.001 16 C -0.020 4.020 17 C -0.236 4.236 18 O -0.344 6.344 19 Si 0.689 3.311 20 C -0.213 4.213 21 C -0.297 4.297 22 S 0.552 5.448 23 C -0.201 4.201 24 H 0.144 0.856 25 H 0.144 0.856 26 H 0.139 0.861 27 H 0.141 0.859 28 H 0.142 0.858 29 H 0.139 0.861 30 H 0.161 0.839 31 H 0.162 0.838 32 H 0.136 0.864 33 H 0.095 0.905 34 H 0.272 0.728 35 H 0.128 0.872 36 H 0.240 0.760 37 H -0.231 1.231 38 H -0.179 1.179 39 H 0.181 0.819 40 H 0.226 0.774 41 H 0.112 0.888 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.852 -6.541 32.520 34.088 hybrid contribution -0.567 -0.146 -1.954 2.040 sum 7.285 -6.687 30.565 32.125 Atomic orbital electron populations 1.24358 0.76537 1.09965 1.09585 1.44839 1.15787 1.19488 1.14540 0.72526 1.24110 1.05647 1.02417 0.86662 1.23931 1.06024 0.99616 0.81799 1.23032 0.95963 1.02188 0.92829 0.85305 1.23313 0.95506 1.03989 0.94287 1.22145 1.01435 0.81828 0.96950 0.88766 1.55019 1.65415 1.17276 1.47219 1.00933 0.72767 0.72465 0.73074 1.93589 1.86825 1.33766 1.83694 1.93624 1.81027 1.61520 1.60021 1.35457 1.27540 1.27726 1.09348 1.18972 0.92923 0.94515 0.95611 1.25576 1.14306 0.93250 0.90456 1.86748 1.49645 1.25158 1.72801 0.93761 0.72566 0.85251 0.79479 1.20439 0.97926 1.05828 0.97080 1.26736 1.03610 1.00849 0.98553 1.82920 0.96989 1.61613 1.03302 1.24156 0.96907 1.05771 0.93253 0.85585 0.85585 0.86094 0.85851 0.85817 0.86149 0.83864 0.83782 0.86359 0.90545 0.72769 0.87189 0.75964 1.23148 1.17870 0.81942 0.77399 0.88793 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 4.08 8.57 127.69 1.09 5.17 16 2 N -0.37 25.31 0.66 -948.85 -0.62 24.68 16 3 H 0.44 -31.38 8.41 -89.69 -0.75 -32.14 16 4 C -0.05 3.05 9.19 127.69 1.17 4.23 16 5 C 0.01 -0.53 4.57 86.30 0.39 -0.13 16 6 C -0.12 6.73 3.13 -10.18 -0.03 6.70 16 7 H 0.13 -7.47 8.06 -2.39 -0.02 -7.49 16 8 C -0.13 5.80 7.42 31.12 0.23 6.03 16 9 C 0.08 -3.13 3.90 45.52 0.18 -2.95 16 10 H 0.09 -3.04 7.77 -2.39 -0.02 -3.06 16 11 N -1.08 33.19 5.54 -167.19 -0.93 32.26 16 12 S 2.72 -42.84 5.04 -56.49 -0.28 -43.12 16 13 O -0.99 7.90 17.48 -128.00 -2.24 5.66 16 14 O -0.97 6.56 16.98 -125.86 -2.14 4.42 16 15 C -0.80 15.47 6.46 66.72 0.43 15.90 16 16 C 0.00 0.04 5.13 -20.92 -0.11 -0.07 16 17 C -0.13 1.42 2.33 71.23 0.17 1.59 16 18 O -0.53 3.99 12.32 -148.36 -1.83 2.16 16 19 Si 0.79 -11.51 30.47 68.60 2.09 -9.42 16 20 C -0.18 3.97 8.74 21.22 0.19 4.15 16 21 C -0.16 4.43 11.23 66.72 0.75 5.18 16 22 S 0.29 -8.95 19.55 -56.49 -1.10 -10.06 16 23 C -0.16 8.05 4.65 31.21 0.15 8.19 16 24 H 0.13 -8.25 8.11 -2.39 -0.02 -8.27 16 25 H 0.13 -8.21 8.14 -2.39 -0.02 -8.23 16 26 H 0.12 -7.75 5.14 -2.39 -0.01 -7.76 16 27 H 0.12 -8.01 8.11 -2.39 -0.02 -8.03 16 28 H 0.12 -8.02 8.14 -2.39 -0.02 -8.04 16 29 H 0.12 -7.79 8.14 -2.38 -0.02 -7.81 16 30 H 0.14 -9.33 7.80 -2.38 -0.02 -9.35 16 31 H 0.14 -9.32 8.09 -2.39 -0.02 -9.34 16 32 H 0.12 -5.44 8.10 -2.39 -0.02 -5.46 16 33 H 0.08 -3.04 8.14 -2.39 -0.02 -3.06 16 34 H 0.43 -15.60 8.78 -96.74 -0.85 -16.45 16 35 H 0.11 -0.97 7.23 -2.39 -0.02 -0.99 16 36 H 0.39 -5.86 8.70 -74.06 -0.64 -6.50 16 37 H -0.30 1.61 7.11 99.48 0.71 2.31 16 38 H -0.25 3.69 6.80 99.48 0.68 4.37 16 39 H 0.16 -3.80 5.54 -2.91 -0.02 -3.82 16 40 H 0.21 -7.07 8.06 -2.91 -0.02 -7.10 16 41 H 0.09 -4.76 5.30 -2.38 -0.01 -4.77 16 42 H 0.14 -7.32 7.91 -2.39 -0.02 -7.34 16 Total: 1.00 -94.10 350.95 -3.62 -97.72 By element: Atomic # 1 Polarization: -157.12 SS G_CDS: -1.18 Total: -158.29 kcal Atomic # 6 Polarization: 49.37 SS G_CDS: 4.61 Total: 53.98 kcal Atomic # 7 Polarization: 58.50 SS G_CDS: -1.55 Total: 56.94 kcal Atomic # 8 Polarization: 18.45 SS G_CDS: -6.20 Total: 12.25 kcal Atomic # 14 Polarization: -11.51 SS G_CDS: 2.09 Total: -9.42 kcal Atomic # 16 Polarization: -51.79 SS G_CDS: -1.39 Total: -53.18 kcal Total: -94.10 -3.62 -97.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607760_13652106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.320 kcal (2) G-P(sol) polarization free energy of solvation -94.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds