Wall clock time and date at job start Mon Mar 8 2021 10:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 H 1.00904 * 109.47167 * 2 1 4 4 C 1.46898 * 109.47528 * 120.00095 * 2 1 3 5 5 C 1.46902 * 109.46917 * 240.00046 * 2 1 3 6 6 C 1.52995 * 109.47180 * 65.00326 * 5 2 1 7 7 H 1.09004 * 112.85429 * 43.79787 * 6 5 2 8 8 C 1.53781 * 113.61584 * 174.99930 * 6 5 2 9 9 C 1.53788 * 87.08282 * 139.97565 * 8 6 5 10 10 H 1.09001 * 113.61393 * 219.93837 * 9 8 6 11 11 N 1.46502 * 113.61331 * 89.11655 * 9 8 6 12 12 S 1.65597 * 120.00075 * 144.33723 * 11 9 8 13 13 O 1.42100 * 106.39893 * 312.19103 * 12 11 9 14 14 O 1.42100 * 106.40206 * 179.27833 * 12 11 9 15 15 C 1.76192 * 107.22042 * 65.73283 * 12 11 9 16 16 C 1.33395 * 122.53945 * 68.45790 * 15 12 11 17 17 C 1.50703 * 125.20143 * 0.02562 * 16 15 12 18 18 O 1.42899 * 109.46797 * 314.57543 * 17 16 15 19 19 Si 1.86296 * 109.47019 * 194.57669 * 17 16 15 20 20 S 1.75885 * 109.59540 * 180.02562 * 16 15 12 21 21 C 1.75887 * 90.96896 * 359.97438 * 20 16 15 22 22 C 1.33390 * 109.59410 * 0.02562 * 21 20 16 23 23 C 1.53781 * 87.08076 * 334.56973 * 9 8 6 24 24 H 1.09002 * 109.46984 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.47048 * 299.99804 * 1 2 3 26 26 H 1.09001 * 109.47502 * 59.99776 * 1 2 3 27 27 H 1.09001 * 109.47465 * 180.02562 * 4 2 1 28 28 H 1.09009 * 109.47039 * 300.00107 * 4 2 1 29 29 H 1.08994 * 109.47173 * 59.99525 * 4 2 1 30 30 H 1.08997 * 109.47284 * 304.99623 * 5 2 1 31 31 H 1.09002 * 109.46955 * 184.99602 * 5 2 1 32 32 H 1.09006 * 113.61543 * 25.43011 * 8 6 5 33 33 H 1.08996 * 113.69185 * 254.53259 * 8 6 5 34 34 H 0.97002 * 119.99964 * 324.33780 * 11 9 8 35 35 H 1.08995 * 109.46901 * 74.57120 * 17 16 15 36 36 H 0.96700 * 114.00538 * 299.84563 * 18 17 16 37 37 H 1.48496 * 110.00496 * 58.67971 * 19 17 16 38 38 H 1.48501 * 109.99753 * 180.02562 * 19 17 16 39 39 H 1.08004 * 125.20211 * 179.97438 * 21 20 16 40 40 H 1.07999 * 122.53576 * 179.73030 * 22 21 20 41 41 H 1.09001 * 113.61500 * 139.98319 * 23 9 8 42 42 H 1.09002 * 113.61609 * 270.88151 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9587 -0.6925 1.1994 5 6 1.9586 -0.6925 -1.1995 6 6 1.5539 0.0977 -2.4455 7 1 1.7119 1.1707 -2.3362 8 6 2.1234 -0.4788 -3.7525 9 6 0.7621 -0.1612 -4.3936 10 1 0.4120 -0.9325 -5.0797 11 7 0.6818 1.1861 -4.9634 12 16 -0.1847 1.4485 -6.3500 13 8 0.2129 0.4397 -7.2684 14 8 -0.0831 2.8380 -6.6297 15 6 -1.8778 1.1391 -5.9733 16 6 -2.5880 1.9258 -5.1633 17 6 -2.0653 3.1583 -4.4714 18 8 -0.7873 2.8764 -3.8974 19 14 -3.2512 3.6661 -3.1274 20 16 -4.2279 1.3047 -5.0264 21 6 -3.8456 -0.0274 -6.1095 22 6 -2.5719 0.0613 -6.4955 23 6 0.1606 -0.2701 -2.9825 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 3.0487 -0.6921 1.1996 28 1 1.5954 -0.1786 2.0895 29 1 1.5954 -1.7201 1.1994 30 1 1.5240 -1.6910 -1.2454 31 1 3.0449 -0.7707 -1.1559 32 1 2.3432 -1.5452 -3.7001 33 1 2.9470 0.1034 -4.1657 34 1 1.1363 1.9245 -4.5284 35 1 -1.9680 3.9675 -5.1950 36 1 -0.7988 2.1663 -3.2411 37 1 -3.4171 2.5593 -2.1514 38 1 -2.7473 4.8809 -2.4377 39 1 -4.5364 -0.7995 -6.4147 40 1 -2.1155 -0.6560 -7.1615 41 1 -0.6006 0.4816 -2.7731 42 1 -0.1563 -1.2793 -2.7196 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607760_14772022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:34:19 Heat of formation + Delta-G solvation = 103.180199 kcal Electronic energy + Delta-G solvation = -26827.173986 eV Core-core repulsion = 23148.921197 eV Total energy + Delta-G solvation = -3678.252789 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.098 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -44.62002 -41.79051 -40.74297 -39.28845 -38.58061 -37.70448 -35.59498 -32.88951 -32.17715 -31.99402 -28.75980 -28.42364 -28.17351 -26.03374 -25.40568 -22.89135 -22.65186 -21.75337 -21.12292 -20.65418 -20.20466 -19.87173 -19.52982 -19.23820 -18.37000 -18.11787 -17.72216 -17.51035 -17.26723 -16.86904 -16.60044 -16.41223 -16.26561 -16.10491 -16.03166 -15.88836 -15.67788 -15.42387 -15.27906 -15.10975 -14.95704 -14.87990 -14.48535 -14.00723 -13.91660 -13.87391 -13.76222 -13.58140 -13.55684 -13.26877 -13.14954 -12.61664 -12.22498 -11.83179 -11.15094 -10.77402 -6.22634 -1.68665 -1.53943 -1.48387 -0.65609 -0.38536 -0.02954 0.14599 0.30995 0.40848 0.45775 0.63105 0.68522 0.94535 1.20330 1.30829 1.48840 1.58275 1.66129 1.69503 1.74372 1.86713 1.88693 1.94311 2.02416 2.12020 2.19042 2.19533 2.23704 2.25323 2.51546 2.75584 2.80520 2.86012 3.01045 3.06418 3.19280 3.24825 3.35339 3.42600 3.68001 3.79645 3.95937 4.17023 4.74561 4.83063 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.012130 B = 0.005823 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.804361 B = 4807.230306 C = 5771.672557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 H 0.427 0.573 4 C -0.048 4.048 5 C -0.001 4.001 6 C -0.149 4.149 7 H 0.116 0.884 8 C -0.127 4.127 9 C 0.130 3.870 10 H 0.118 0.882 11 N -1.091 6.091 12 S 2.715 3.285 13 O -0.951 6.951 14 O -0.937 6.937 15 C -0.665 4.665 16 C -0.109 4.109 17 C -0.068 4.068 18 O -0.519 6.519 19 Si 0.679 3.321 20 S 0.166 5.834 21 C -0.205 4.205 22 C -0.080 4.080 23 C -0.165 4.165 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.423 0.577 35 H 0.156 0.844 36 H 0.364 0.636 37 H -0.243 1.243 38 H -0.227 1.227 39 H 0.178 0.822 40 H 0.160 0.840 41 H 0.077 0.923 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.755 -7.752 22.469 24.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 N 0.038 4.962 3 H 0.262 0.738 4 C -0.190 4.190 5 C -0.122 4.122 6 C -0.167 4.167 7 H 0.134 0.866 8 C -0.167 4.167 9 C 0.021 3.979 10 H 0.136 0.864 11 N -0.851 5.851 12 S 2.801 3.199 13 O -0.941 6.941 14 O -0.927 6.927 15 C -0.765 4.765 16 C -0.230 4.230 17 C -0.179 4.179 18 O -0.326 6.326 19 Si 0.576 3.424 20 S 0.431 5.569 21 C -0.340 4.340 22 C -0.107 4.107 23 C -0.204 4.204 24 H 0.142 0.858 25 H 0.142 0.858 26 H 0.141 0.859 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.261 0.739 35 H 0.174 0.826 36 H 0.213 0.787 37 H -0.167 1.167 38 H -0.149 1.149 39 H 0.196 0.804 40 H 0.177 0.823 41 H 0.096 0.904 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.610 -6.871 22.818 24.481 hybrid contribution 1.475 -0.781 0.034 1.669 sum 7.084 -7.652 22.852 25.119 Atomic orbital electron populations 1.24304 0.76225 1.09789 1.09512 1.45098 1.16232 1.19033 1.15808 0.73827 1.24148 1.05741 1.02450 0.86653 1.24154 1.05322 0.99876 0.82873 1.23253 0.99338 1.01092 0.93056 0.86600 1.23310 0.98319 1.03195 0.91846 1.21514 0.96878 0.84941 0.94602 0.86379 1.55616 1.67108 1.14529 1.47853 1.01570 0.72639 0.73588 0.72112 1.93625 1.80814 1.60881 1.58813 1.93636 1.85765 1.31354 1.81963 1.29904 1.27953 1.06428 1.12205 1.24990 0.98494 0.99554 0.99959 1.25012 0.91524 0.96037 1.05344 1.86745 1.28274 1.58679 1.58918 0.93873 0.86208 0.83024 0.79326 1.84413 1.08638 1.20015 1.43878 1.26021 1.00272 1.03187 1.04559 1.19796 0.93575 0.97071 1.00301 1.23971 0.94875 1.03486 0.98086 0.85798 0.85827 0.85929 0.85742 0.85757 0.85939 0.84947 0.84770 0.87413 0.88638 0.73912 0.82640 0.78726 1.16704 1.14950 0.80448 0.82264 0.90415 0.87351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 1.79 8.57 60.06 0.51 2.30 16 2 N -0.39 12.88 0.66 -251.26 -0.17 12.72 16 3 H 0.43 -14.87 8.41 -39.29 -0.33 -15.20 16 4 C -0.05 1.55 9.19 60.06 0.55 2.11 16 5 C 0.00 0.03 4.57 -3.83 -0.02 0.01 16 6 C -0.15 4.08 3.13 -89.81 -0.28 3.80 16 7 H 0.12 -3.28 8.05 -51.93 -0.42 -3.70 16 8 C -0.13 2.89 7.43 -25.91 -0.19 2.69 16 9 C 0.13 -2.60 4.52 -67.11 -0.30 -2.90 16 10 H 0.12 -2.17 7.75 -51.93 -0.40 -2.57 16 11 N -1.09 18.33 3.82 -4.19 -0.02 18.31 16 12 S 2.71 -28.65 4.90 -107.50 -0.53 -29.18 16 13 O -0.95 6.63 16.84 -57.17 -0.96 5.66 16 14 O -0.94 6.23 16.46 -62.53 -1.03 5.20 16 15 C -0.66 7.68 5.79 -41.21 -0.24 7.44 16 16 C -0.11 1.38 5.75 -36.00 -0.21 1.18 16 17 C -0.07 0.93 2.06 36.01 0.07 1.01 16 18 O -0.52 8.38 8.55 -45.09 -0.39 7.99 16 19 Si 0.68 -9.86 31.07 -169.99 -5.28 -15.14 16 20 S 0.17 -2.14 20.72 -107.50 -2.23 -4.36 16 21 C -0.20 2.46 11.23 29.04 0.33 2.79 16 22 C -0.08 0.89 9.69 -41.21 -0.40 0.49 16 23 C -0.17 4.12 5.59 -25.91 -0.14 3.98 16 24 H 0.12 -3.91 8.11 -51.93 -0.42 -4.34 16 25 H 0.12 -3.92 8.14 -51.92 -0.42 -4.34 16 26 H 0.12 -3.81 5.13 -51.93 -0.27 -4.08 16 27 H 0.12 -3.98 8.11 -51.93 -0.42 -4.40 16 28 H 0.12 -3.97 8.14 -51.92 -0.42 -4.39 16 29 H 0.12 -3.89 8.14 -51.93 -0.42 -4.31 16 30 H 0.13 -4.15 7.79 -51.93 -0.40 -4.56 16 31 H 0.13 -4.20 8.09 -51.93 -0.42 -4.62 16 32 H 0.11 -2.51 8.10 -51.93 -0.42 -2.93 16 33 H 0.09 -1.99 8.14 -51.93 -0.42 -2.41 16 34 H 0.42 -7.78 7.67 -34.47 -0.26 -8.04 16 35 H 0.16 -1.92 7.76 -51.93 -0.40 -2.32 16 36 H 0.36 -7.59 5.85 45.56 0.27 -7.32 16 37 H -0.24 3.65 7.11 56.52 0.40 4.05 16 38 H -0.23 2.67 7.11 56.52 0.40 3.07 16 39 H 0.18 -2.40 8.06 -52.48 -0.42 -2.82 16 40 H 0.16 -1.82 7.74 -52.49 -0.41 -2.23 16 41 H 0.08 -1.97 4.84 -51.93 -0.25 -2.22 16 42 H 0.11 -2.83 7.90 -51.93 -0.41 -3.24 16 LS Contribution 346.68 15.07 5.22 5.22 Total: 1.00 -39.64 346.68 -11.97 -51.62 By element: Atomic # 1 Polarization: -76.65 SS G_CDS: -6.28 Total: -82.94 kcal Atomic # 6 Polarization: 25.22 SS G_CDS: -0.32 Total: 24.90 kcal Atomic # 7 Polarization: 31.21 SS G_CDS: -0.18 Total: 31.03 kcal Atomic # 8 Polarization: 21.23 SS G_CDS: -2.38 Total: 18.85 kcal Atomic # 14 Polarization: -9.86 SS G_CDS: -5.28 Total: -15.14 kcal Atomic # 16 Polarization: -30.79 SS G_CDS: -2.75 Total: -33.54 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -39.64 -11.97 -51.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607760_14772022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.797 kcal (2) G-P(sol) polarization free energy of solvation -39.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds