Wall clock time and date at job start Mon Mar 8 2021 10:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 H 1.00904 * 109.47167 * 2 1 4 4 C 1.46898 * 109.47528 * 120.00095 * 2 1 3 5 5 C 1.46902 * 109.46917 * 240.00046 * 2 1 3 6 6 C 1.52995 * 109.47180 * 65.00326 * 5 2 1 7 7 H 1.09004 * 112.85429 * 43.79787 * 6 5 2 8 8 C 1.53781 * 113.61584 * 174.99930 * 6 5 2 9 9 C 1.53788 * 87.08282 * 139.97565 * 8 6 5 10 10 H 1.09001 * 113.61393 * 219.93837 * 9 8 6 11 11 N 1.46502 * 113.61331 * 89.11655 * 9 8 6 12 12 S 1.65597 * 120.00075 * 144.33723 * 11 9 8 13 13 O 1.42100 * 106.39893 * 312.19103 * 12 11 9 14 14 O 1.42100 * 106.40206 * 179.27833 * 12 11 9 15 15 C 1.76192 * 107.22042 * 65.73283 * 12 11 9 16 16 C 1.33395 * 122.53945 * 68.45790 * 15 12 11 17 17 C 1.50703 * 125.20143 * 0.02562 * 16 15 12 18 18 O 1.42899 * 109.46797 * 314.57543 * 17 16 15 19 19 Si 1.86296 * 109.47019 * 194.57669 * 17 16 15 20 20 S 1.75885 * 109.59540 * 180.02562 * 16 15 12 21 21 C 1.75887 * 90.96896 * 359.97438 * 20 16 15 22 22 C 1.33390 * 109.59410 * 0.02562 * 21 20 16 23 23 C 1.53781 * 87.08076 * 334.56973 * 9 8 6 24 24 H 1.09002 * 109.46984 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.47048 * 299.99804 * 1 2 3 26 26 H 1.09001 * 109.47502 * 59.99776 * 1 2 3 27 27 H 1.09001 * 109.47465 * 180.02562 * 4 2 1 28 28 H 1.09009 * 109.47039 * 300.00107 * 4 2 1 29 29 H 1.08994 * 109.47173 * 59.99525 * 4 2 1 30 30 H 1.08997 * 109.47284 * 304.99623 * 5 2 1 31 31 H 1.09002 * 109.46955 * 184.99602 * 5 2 1 32 32 H 1.09006 * 113.61543 * 25.43011 * 8 6 5 33 33 H 1.08996 * 113.69185 * 254.53259 * 8 6 5 34 34 H 0.97002 * 119.99964 * 324.33780 * 11 9 8 35 35 H 1.08995 * 109.46901 * 74.57120 * 17 16 15 36 36 H 0.96700 * 114.00538 * 299.84563 * 18 17 16 37 37 H 1.48496 * 110.00496 * 58.67971 * 19 17 16 38 38 H 1.48501 * 109.99753 * 180.02562 * 19 17 16 39 39 H 1.08004 * 125.20211 * 179.97438 * 21 20 16 40 40 H 1.07999 * 122.53576 * 179.73030 * 22 21 20 41 41 H 1.09001 * 113.61500 * 139.98319 * 23 9 8 42 42 H 1.09002 * 113.61609 * 270.88151 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9587 -0.6925 1.1994 5 6 1.9586 -0.6925 -1.1995 6 6 1.5539 0.0977 -2.4455 7 1 1.7119 1.1707 -2.3362 8 6 2.1234 -0.4788 -3.7525 9 6 0.7621 -0.1612 -4.3936 10 1 0.4120 -0.9325 -5.0797 11 7 0.6818 1.1861 -4.9634 12 16 -0.1847 1.4485 -6.3500 13 8 0.2129 0.4397 -7.2684 14 8 -0.0831 2.8380 -6.6297 15 6 -1.8778 1.1391 -5.9733 16 6 -2.5880 1.9258 -5.1633 17 6 -2.0653 3.1583 -4.4714 18 8 -0.7873 2.8764 -3.8974 19 14 -3.2512 3.6661 -3.1274 20 16 -4.2279 1.3047 -5.0264 21 6 -3.8456 -0.0274 -6.1095 22 6 -2.5719 0.0613 -6.4955 23 6 0.1606 -0.2701 -2.9825 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 3.0487 -0.6921 1.1996 28 1 1.5954 -0.1786 2.0895 29 1 1.5954 -1.7201 1.1994 30 1 1.5240 -1.6910 -1.2454 31 1 3.0449 -0.7707 -1.1559 32 1 2.3432 -1.5452 -3.7001 33 1 2.9470 0.1034 -4.1657 34 1 1.1363 1.9245 -4.5284 35 1 -1.9680 3.9675 -5.1950 36 1 -0.7988 2.1663 -3.2411 37 1 -3.4171 2.5593 -2.1514 38 1 -2.7473 4.8809 -2.4377 39 1 -4.5364 -0.7995 -6.4147 40 1 -2.1155 -0.6560 -7.1615 41 1 -0.6006 0.4816 -2.7731 42 1 -0.1563 -1.2793 -2.7196 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607760_14772022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:34:18 Heat of formation + Delta-G solvation = 74.234386 kcal Electronic energy + Delta-G solvation = -26828.429170 eV Core-core repulsion = 23148.921197 eV Total energy + Delta-G solvation = -3679.507974 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.098 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.20483 -39.97540 -39.56427 -38.49078 -37.55559 -37.01744 -34.06950 -31.87123 -29.90951 -29.50245 -27.58438 -26.65712 -25.80607 -24.48318 -23.80453 -21.88616 -20.92922 -20.18997 -19.48671 -19.10626 -18.71293 -18.15298 -17.77621 -17.29032 -17.11251 -16.90293 -16.53797 -16.13108 -15.57505 -15.42088 -15.18764 -15.12963 -14.35175 -14.21967 -14.03958 -13.92417 -13.83079 -13.63654 -13.54817 -13.34522 -13.30540 -13.22932 -13.14508 -13.10839 -12.89728 -12.84346 -12.57879 -12.27819 -11.99989 -11.73414 -11.58297 -11.34063 -11.08795 -10.42900 -10.16498 -9.78757 -5.06270 -0.76078 -0.54651 0.34143 0.60893 1.03509 1.04331 1.08695 1.43924 1.80139 2.03885 2.66331 2.89277 2.96338 3.05748 3.19780 3.22960 3.34739 3.40658 3.49414 3.70047 3.77667 3.98248 4.08881 4.18112 4.20058 4.22055 4.27504 4.35500 4.40254 4.44665 4.50994 4.67933 4.70438 4.73666 4.80381 4.82451 4.87464 4.89558 4.91741 4.97099 5.09600 5.12682 5.42226 6.13677 6.28337 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.012130 B = 0.005823 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.804361 B = 4807.230306 C = 5771.672557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.370 5.370 3 H 0.437 0.563 4 C -0.046 4.046 5 C 0.008 3.992 6 C -0.125 4.125 7 H 0.129 0.871 8 C -0.133 4.133 9 C 0.095 3.905 10 H 0.092 0.908 11 N -1.073 6.073 12 S 2.722 3.278 13 O -1.000 7.000 14 O -0.986 6.986 15 C -0.671 4.671 16 C -0.104 4.104 17 C -0.077 4.077 18 O -0.522 6.522 19 Si 0.722 3.278 20 S 0.198 5.802 21 C -0.212 4.212 22 C -0.097 4.097 23 C -0.154 4.154 24 H 0.125 0.875 25 H 0.125 0.875 26 H 0.119 0.881 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.432 0.568 35 H 0.136 0.864 36 H 0.385 0.615 37 H -0.221 1.221 38 H -0.267 1.267 39 H 0.191 0.809 40 H 0.151 0.849 41 H 0.087 0.913 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.337 -8.373 25.602 27.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 N 0.054 4.946 3 H 0.274 0.726 4 C -0.188 4.188 5 C -0.114 4.114 6 C -0.144 4.144 7 H 0.147 0.853 8 C -0.173 4.173 9 C -0.013 4.013 10 H 0.110 0.890 11 N -0.837 5.837 12 S 2.810 3.190 13 O -0.990 6.990 14 O -0.976 6.976 15 C -0.773 4.773 16 C -0.226 4.226 17 C -0.187 4.187 18 O -0.333 6.333 19 Si 0.618 3.382 20 S 0.462 5.538 21 C -0.348 4.348 22 C -0.124 4.124 23 C -0.193 4.193 24 H 0.144 0.856 25 H 0.144 0.856 26 H 0.137 0.863 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.138 0.862 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.133 0.867 33 H 0.093 0.907 34 H 0.272 0.728 35 H 0.153 0.847 36 H 0.238 0.762 37 H -0.144 1.144 38 H -0.192 1.192 39 H 0.208 0.792 40 H 0.168 0.832 41 H 0.105 0.895 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.225 -7.509 25.950 27.516 hybrid contribution 1.636 -0.597 -0.929 1.974 sum 6.862 -8.106 25.021 27.182 Atomic orbital electron populations 1.24339 0.76735 1.09935 1.09415 1.44841 1.15612 1.19496 1.14675 0.72566 1.24114 1.05698 1.02396 0.86612 1.23948 1.06008 0.99593 0.81869 1.23024 0.96380 1.02155 0.92818 0.85309 1.23310 0.95962 1.03659 0.94354 1.21974 1.00354 0.82369 0.96611 0.88996 1.55037 1.66001 1.16387 1.46321 1.00784 0.73294 0.71848 0.73030 1.93558 1.81906 1.61739 1.61793 1.93564 1.86711 1.33638 1.83695 1.29628 1.27261 1.07116 1.13313 1.25193 0.98773 0.99354 0.99239 1.25140 0.92836 0.95006 1.05695 1.86705 1.27157 1.59770 1.59640 0.93260 0.85522 0.81293 0.78095 1.84266 1.07560 1.18997 1.42987 1.26253 1.00033 1.03916 1.04555 1.19818 0.94252 0.97426 1.00952 1.23974 0.96438 1.05004 0.93855 0.85637 0.85635 0.86292 0.85752 0.85832 0.86159 0.84025 0.83810 0.86728 0.90721 0.72781 0.84671 0.76232 1.14400 1.19153 0.79208 0.83180 0.89496 0.85575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 3.98 8.57 127.69 1.09 5.08 16 2 N -0.37 24.93 0.66 -948.84 -0.62 24.30 16 3 H 0.44 -30.90 8.41 -89.69 -0.75 -31.66 16 4 C -0.05 3.00 9.19 127.69 1.17 4.18 16 5 C 0.01 -0.48 4.57 86.30 0.39 -0.09 16 6 C -0.13 6.86 3.13 -10.27 -0.03 6.83 16 7 H 0.13 -7.37 8.05 -2.38 -0.02 -7.39 16 8 C -0.13 5.80 7.43 31.12 0.23 6.04 16 9 C 0.09 -3.55 4.52 45.52 0.21 -3.34 16 10 H 0.09 -2.98 7.75 -2.39 -0.02 -3.00 16 11 N -1.07 32.76 3.82 -167.18 -0.64 32.12 16 12 S 2.72 -45.94 4.90 -56.49 -0.28 -46.22 16 13 O -1.00 8.69 16.84 -128.00 -2.16 6.54 16 14 O -0.99 8.71 16.46 -122.88 -2.02 6.68 16 15 C -0.67 13.48 5.79 21.22 0.12 13.61 16 16 C -0.10 2.46 5.75 24.59 0.14 2.61 16 17 C -0.08 1.96 2.06 71.24 0.15 2.11 16 18 O -0.52 16.13 8.55 -139.55 -1.19 14.93 16 19 Si 0.72 -20.66 31.07 68.60 2.13 -18.53 16 20 S 0.20 -4.98 20.72 -56.49 -1.17 -6.15 16 21 C -0.21 4.77 11.23 66.72 0.75 5.52 16 22 C -0.10 1.88 9.69 21.22 0.21 2.08 16 23 C -0.15 7.63 5.59 31.12 0.17 7.81 16 24 H 0.13 -8.03 8.11 -2.39 -0.02 -8.05 16 25 H 0.13 -8.02 8.14 -2.38 -0.02 -8.04 16 26 H 0.12 -7.52 5.13 -2.39 -0.01 -7.53 16 27 H 0.12 -7.98 8.11 -2.39 -0.02 -8.00 16 28 H 0.12 -7.90 8.14 -2.38 -0.02 -7.92 16 29 H 0.12 -7.67 8.14 -2.39 -0.02 -7.69 16 30 H 0.14 -9.05 7.79 -2.39 -0.02 -9.07 16 31 H 0.14 -9.16 8.09 -2.39 -0.02 -9.18 16 32 H 0.11 -5.17 8.10 -2.38 -0.02 -5.19 16 33 H 0.07 -2.90 8.14 -2.39 -0.02 -2.92 16 34 H 0.43 -14.79 7.67 -96.75 -0.74 -15.53 16 35 H 0.14 -2.91 7.76 -2.39 -0.02 -2.93 16 36 H 0.39 -16.00 5.85 -74.06 -0.43 -16.43 16 37 H -0.22 7.04 7.11 99.48 0.71 7.75 16 38 H -0.27 5.84 7.11 99.48 0.71 6.55 16 39 H 0.19 -4.93 8.06 -2.91 -0.02 -4.95 16 40 H 0.15 -2.78 7.74 -2.91 -0.02 -2.80 16 41 H 0.09 -4.45 4.84 -2.39 -0.01 -4.46 16 42 H 0.13 -6.64 7.90 -2.39 -0.02 -6.66 16 Total: 1.00 -86.84 346.68 -2.18 -89.02 By element: Atomic # 1 Polarization: -154.28 SS G_CDS: -0.83 Total: -155.12 kcal Atomic # 6 Polarization: 47.81 SS G_CDS: 4.61 Total: 52.42 kcal Atomic # 7 Polarization: 57.69 SS G_CDS: -1.26 Total: 56.42 kcal Atomic # 8 Polarization: 33.53 SS G_CDS: -5.37 Total: 28.15 kcal Atomic # 14 Polarization: -20.66 SS G_CDS: 2.13 Total: -18.53 kcal Atomic # 16 Polarization: -50.92 SS G_CDS: -1.45 Total: -52.37 kcal Total: -86.84 -2.18 -89.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607760_14772022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.252 kcal (2) G-P(sol) polarization free energy of solvation -86.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds