Wall clock time and date at job start Mon Mar 8 2021 10:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 H 1.00901 * 109.47215 * 2 1 4 4 C 1.46902 * 109.46688 * 240.00130 * 2 1 3 5 5 C 1.46901 * 109.47230 * 120.00743 * 2 1 3 6 6 C 1.52998 * 109.46860 * 294.99615 * 5 2 1 7 7 H 1.09001 * 112.85317 * 43.80405 * 6 5 2 8 8 C 1.53784 * 113.61444 * 175.00251 * 6 5 2 9 9 C 1.53784 * 87.08068 * 139.97906 * 8 6 5 10 10 H 1.09003 * 113.61418 * 219.93256 * 9 8 6 11 11 N 1.46497 * 113.61177 * 89.11628 * 9 8 6 12 12 S 1.65602 * 120.00015 * 144.99954 * 11 9 8 13 13 O 1.42095 * 106.40577 * 178.54154 * 12 11 9 14 14 O 1.42101 * 106.39873 * 311.45756 * 12 11 9 15 15 C 1.76202 * 107.21925 * 64.99622 * 12 11 9 16 16 C 1.33382 * 122.53813 * 269.71226 * 15 12 11 17 17 S 1.75892 * 109.58906 * 179.90235 * 16 15 12 18 18 C 1.75876 * 90.97208 * 0.30354 * 17 16 15 19 19 C 1.50703 * 125.20472 * 179.86489 * 18 17 16 20 20 O 1.42904 * 109.46791 * 244.95729 * 19 18 17 21 21 Si 1.86297 * 109.46922 * 4.95557 * 19 18 17 22 22 C 1.33395 * 109.59498 * 359.82681 * 18 17 16 23 23 C 1.53775 * 87.08133 * 334.56607 * 9 8 6 24 24 H 1.09004 * 109.46736 * 299.99613 * 1 2 3 25 25 H 1.09000 * 109.47357 * 59.99578 * 1 2 3 26 26 H 1.09002 * 109.47742 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46739 * 60.00523 * 4 2 1 28 28 H 1.09001 * 109.47165 * 179.97438 * 4 2 1 29 29 H 1.08992 * 109.47412 * 300.00019 * 4 2 1 30 30 H 1.09000 * 109.47106 * 54.99780 * 5 2 1 31 31 H 1.08998 * 109.47004 * 174.99715 * 5 2 1 32 32 H 1.09002 * 113.61168 * 254.52929 * 8 6 5 33 33 H 1.08996 * 113.61356 * 25.34647 * 8 6 5 34 34 H 0.97000 * 120.00591 * 325.00166 * 11 9 8 35 35 H 1.07999 * 125.20832 * 0.02691 * 16 15 12 36 36 H 1.08997 * 109.47017 * 124.95986 * 19 18 17 37 37 H 0.96694 * 114.00068 * 60.00424 * 20 19 18 38 38 H 1.48498 * 109.99617 * 179.97438 * 21 19 18 39 39 H 1.48497 * 110.00278 * 301.31955 * 21 19 18 40 40 H 1.07995 * 122.54338 * 180.02562 * 22 18 17 41 41 H 1.08993 * 113.61831 * 270.88366 * 23 9 8 42 42 H 1.09005 * 113.61299 * 139.97836 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9585 -0.6925 -1.1995 5 6 1.9587 -0.6926 1.1993 6 6 1.5540 0.0974 2.4455 7 1 0.5238 0.4515 2.4062 8 6 1.9137 -0.6061 3.7648 9 6 2.3148 0.7778 4.3022 10 1 3.2164 0.7639 4.9145 11 7 1.2103 1.5052 4.9323 12 16 1.4993 2.4779 6.2410 13 8 0.2513 3.0597 6.5920 14 8 2.2811 1.7107 7.1462 15 6 2.5274 3.7993 5.6918 16 6 3.8592 3.7326 5.7229 17 16 4.5394 5.2290 5.0968 18 6 2.9292 5.8837 4.8286 19 6 2.6292 7.2482 4.2636 20 8 1.9777 8.0424 5.2571 21 14 4.2201 8.0729 3.7543 22 6 2.0141 4.9874 5.2010 23 6 2.5665 1.1853 2.8409 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.5952 -0.1785 -2.0894 28 1 3.0485 -0.6921 -1.1998 29 1 1.5952 -1.7201 -1.1995 30 1 1.5240 -1.6912 1.2452 31 1 3.0449 -0.7709 1.1556 32 1 1.0548 -1.0410 4.2760 33 1 2.7493 -1.3003 3.6756 34 1 0.3096 1.4171 4.5831 35 1 4.4323 2.8882 6.0763 36 1 1.9782 7.1468 3.3952 37 1 2.5003 8.1746 6.0598 38 1 3.9378 9.4192 3.1948 39 1 5.1291 8.1884 4.9228 40 1 0.9532 5.1744 5.1250 41 1 3.5814 0.9819 2.4995 42 1 2.2346 2.1967 2.6063 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607760_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:34:22 Heat of formation + Delta-G solvation = 93.217869 kcal Electronic energy + Delta-G solvation = -25318.108073 eV Core-core repulsion = 21639.423285 eV Total energy + Delta-G solvation = -3678.684788 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.098 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -44.53749 -41.75811 -40.43586 -39.23657 -38.51310 -37.86446 -35.72607 -32.78307 -32.11935 -31.89949 -28.78370 -28.16305 -28.08104 -25.95340 -25.84323 -22.68718 -22.42277 -21.93999 -21.28111 -20.26447 -20.12822 -19.76972 -19.45002 -18.86018 -18.68577 -18.44120 -17.61924 -17.35101 -17.22414 -16.85857 -16.44713 -16.39534 -16.30973 -16.06387 -15.90552 -15.76601 -15.63559 -15.42434 -15.16160 -15.12202 -15.00971 -14.65056 -14.51803 -14.14173 -14.04995 -13.82632 -13.78739 -13.56498 -13.28564 -13.22115 -13.15036 -12.48600 -12.01229 -11.65454 -11.20372 -10.80667 -5.98629 -1.82147 -1.51794 -1.45888 -0.62118 -0.34149 0.01274 0.30968 0.44092 0.48489 0.67338 0.68710 0.86743 1.09799 1.24317 1.30205 1.55352 1.62989 1.63690 1.72250 1.74571 1.84488 1.94995 2.05561 2.13366 2.18786 2.25066 2.26757 2.33654 2.41341 2.63643 2.75715 2.83600 2.88285 2.90907 3.03271 3.13759 3.26212 3.32497 3.50103 3.63724 3.69974 3.95780 4.11381 4.55266 5.44521 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.011400 B = 0.004217 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.483578 B = 6638.223633 C = 7999.251266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.387 5.387 3 H 0.427 0.573 4 C -0.048 4.048 5 C 0.000 4.000 6 C -0.152 4.152 7 H 0.115 0.885 8 C -0.128 4.128 9 C 0.129 3.871 10 H 0.117 0.883 11 N -1.100 6.100 12 S 2.708 3.292 13 O -0.942 6.942 14 O -0.945 6.945 15 C -0.687 4.687 16 C -0.092 4.092 17 S 0.173 5.827 18 C -0.224 4.224 19 C -0.033 4.033 20 O -0.520 6.520 21 Si 0.645 3.355 22 C -0.046 4.046 23 C -0.163 4.163 24 H 0.123 0.877 25 H 0.125 0.875 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.419 0.581 35 H 0.185 0.815 36 H 0.129 0.871 37 H 0.381 0.619 38 H -0.230 1.230 39 H -0.238 1.238 40 H 0.157 0.843 41 H 0.106 0.894 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.490 -17.057 -23.986 29.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 N 0.038 4.962 3 H 0.262 0.738 4 C -0.190 4.190 5 C -0.122 4.122 6 C -0.170 4.170 7 H 0.132 0.868 8 C -0.168 4.168 9 C 0.020 3.980 10 H 0.135 0.865 11 N -0.858 5.858 12 S 2.795 3.205 13 O -0.932 6.932 14 O -0.935 6.935 15 C -0.787 4.787 16 C -0.231 4.231 17 S 0.437 5.563 18 C -0.342 4.342 19 C -0.145 4.145 20 O -0.327 6.327 21 Si 0.544 3.456 22 C -0.075 4.075 23 C -0.203 4.203 24 H 0.142 0.858 25 H 0.143 0.857 26 H 0.142 0.858 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.112 0.888 33 H 0.127 0.873 34 H 0.254 0.746 35 H 0.202 0.798 36 H 0.146 0.854 37 H 0.230 0.770 38 H -0.153 1.153 39 H -0.162 1.162 40 H 0.174 0.826 41 H 0.124 0.876 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.843 -16.138 -23.634 28.630 hybrid contribution -1.618 0.395 0.723 1.816 sum -0.775 -15.743 -22.911 27.809 Atomic orbital electron populations 1.24193 0.75966 1.09752 1.09533 1.45036 1.16386 1.19074 1.15747 0.73840 1.24148 1.05680 1.02477 0.86664 1.24135 1.05127 0.99994 0.82918 1.23306 1.01842 0.98655 0.93207 0.86753 1.23327 1.04015 0.96820 0.92624 1.21512 0.90373 0.92323 0.93791 0.86515 1.55529 1.16104 1.61377 1.52743 1.01779 0.73520 0.72825 0.72421 1.93658 1.41401 1.77714 1.80472 1.93647 1.72013 1.68987 1.58808 1.29936 1.07849 1.18854 1.22066 1.25964 0.96538 1.02635 0.97943 1.84675 1.07263 1.07740 1.56622 1.25108 0.95820 1.02350 1.10919 1.24414 1.08557 0.87419 0.94107 1.86664 1.45240 1.71197 1.29555 0.95706 0.76117 0.86828 0.86999 1.19603 1.01484 0.89964 0.96433 1.23814 0.99551 0.99304 0.97585 0.85833 0.85698 0.85849 0.85720 0.85795 0.85933 0.85025 0.84871 0.88801 0.87332 0.74580 0.79755 0.85357 0.77007 1.15315 1.16181 0.82594 0.87592 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 1.69 8.97 60.06 0.54 2.23 16 2 N -0.39 13.04 0.66 -251.26 -0.17 12.87 16 3 H 0.43 -14.98 8.44 -39.29 -0.33 -15.31 16 4 C -0.05 1.56 9.19 60.07 0.55 2.12 16 5 C 0.00 0.01 4.48 -3.82 -0.02 0.00 16 6 C -0.15 4.20 3.40 -89.80 -0.31 3.90 16 7 H 0.11 -3.27 6.06 -51.93 -0.31 -3.59 16 8 C -0.13 2.98 7.43 -25.92 -0.19 2.79 16 9 C 0.13 -2.67 4.51 -67.12 -0.30 -2.97 16 10 H 0.12 -2.29 7.77 -51.93 -0.40 -2.70 16 11 N -1.10 19.72 5.73 -4.20 -0.02 19.70 16 12 S 2.71 -31.94 5.77 -107.50 -0.62 -32.56 16 13 O -0.94 7.04 17.63 -57.18 -1.01 6.03 16 14 O -0.94 7.79 17.16 -57.18 -0.98 6.81 16 15 C -0.69 8.43 5.86 -41.21 -0.24 8.19 16 16 C -0.09 1.20 10.70 29.04 0.31 1.51 16 17 S 0.17 -2.15 20.59 -107.50 -2.21 -4.36 16 18 C -0.22 2.58 5.70 -36.00 -0.21 2.37 16 19 C -0.03 0.36 2.96 36.01 0.11 0.47 16 20 O -0.52 4.27 12.88 -35.23 -0.45 3.81 16 21 Si 0.65 -6.98 30.98 -169.99 -5.27 -12.24 16 22 C -0.05 0.52 9.59 -41.21 -0.40 0.13 16 23 C -0.16 4.12 7.43 -25.92 -0.19 3.93 16 24 H 0.12 -3.93 6.10 -51.93 -0.32 -4.24 16 25 H 0.12 -4.01 8.14 -51.93 -0.42 -4.43 16 26 H 0.12 -3.91 8.11 -51.93 -0.42 -4.33 16 27 H 0.12 -4.03 8.14 -51.93 -0.42 -4.45 16 28 H 0.12 -4.03 8.11 -51.93 -0.42 -4.45 16 29 H 0.12 -3.92 8.14 -51.93 -0.42 -4.34 16 30 H 0.13 -4.13 8.09 -51.93 -0.42 -4.55 16 31 H 0.13 -4.26 7.79 -51.93 -0.40 -4.67 16 32 H 0.09 -2.02 8.14 -51.93 -0.42 -2.45 16 33 H 0.11 -2.60 8.10 -51.93 -0.42 -3.02 16 34 H 0.42 -8.40 8.79 -34.47 -0.30 -8.70 16 35 H 0.19 -2.78 8.00 -52.49 -0.42 -3.20 16 36 H 0.13 -1.64 7.96 -51.93 -0.41 -2.05 16 37 H 0.38 -4.02 8.70 45.56 0.40 -3.62 16 38 H -0.23 1.65 7.11 56.52 0.40 2.05 16 39 H -0.24 1.99 7.11 56.52 0.40 2.39 16 40 H 0.16 -1.76 7.96 -52.49 -0.42 -2.18 16 41 H 0.11 -2.80 7.90 -51.93 -0.41 -3.21 16 42 H 0.09 -2.22 8.14 -51.93 -0.42 -2.64 16 LS Contribution 364.42 15.07 5.49 5.49 Total: 1.00 -41.57 364.42 -11.92 -53.48 By element: Atomic # 1 Polarization: -77.35 SS G_CDS: -6.33 Total: -83.68 kcal Atomic # 6 Polarization: 24.99 SS G_CDS: -0.34 Total: 24.65 kcal Atomic # 7 Polarization: 32.76 SS G_CDS: -0.19 Total: 32.57 kcal Atomic # 8 Polarization: 19.10 SS G_CDS: -2.44 Total: 16.65 kcal Atomic # 14 Polarization: -6.98 SS G_CDS: -5.27 Total: -12.24 kcal Atomic # 16 Polarization: -34.09 SS G_CDS: -2.83 Total: -36.92 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -41.57 -11.92 -53.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607760_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.700 kcal (2) G-P(sol) polarization free energy of solvation -41.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds