Wall clock time and date at job start Mon Mar 8 2021 10:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 H 1.00901 * 109.47215 * 2 1 4 4 C 1.46902 * 109.46688 * 240.00130 * 2 1 3 5 5 C 1.46901 * 109.47230 * 120.00743 * 2 1 3 6 6 C 1.52998 * 109.46860 * 294.99615 * 5 2 1 7 7 H 1.09001 * 112.85317 * 43.80405 * 6 5 2 8 8 C 1.53784 * 113.61444 * 175.00251 * 6 5 2 9 9 C 1.53784 * 87.08068 * 139.97906 * 8 6 5 10 10 H 1.09003 * 113.61418 * 219.93256 * 9 8 6 11 11 N 1.46497 * 113.61177 * 89.11628 * 9 8 6 12 12 S 1.65602 * 120.00015 * 144.99954 * 11 9 8 13 13 O 1.42095 * 106.40577 * 178.54154 * 12 11 9 14 14 O 1.42101 * 106.39873 * 311.45756 * 12 11 9 15 15 C 1.76202 * 107.21925 * 64.99622 * 12 11 9 16 16 C 1.33382 * 122.53813 * 269.71226 * 15 12 11 17 17 S 1.75892 * 109.58906 * 179.90235 * 16 15 12 18 18 C 1.75876 * 90.97208 * 0.30354 * 17 16 15 19 19 C 1.50703 * 125.20472 * 179.86489 * 18 17 16 20 20 O 1.42904 * 109.46791 * 244.95729 * 19 18 17 21 21 Si 1.86297 * 109.46922 * 4.95557 * 19 18 17 22 22 C 1.33395 * 109.59498 * 359.82681 * 18 17 16 23 23 C 1.53775 * 87.08133 * 334.56607 * 9 8 6 24 24 H 1.09004 * 109.46736 * 299.99613 * 1 2 3 25 25 H 1.09000 * 109.47357 * 59.99578 * 1 2 3 26 26 H 1.09002 * 109.47742 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46739 * 60.00523 * 4 2 1 28 28 H 1.09001 * 109.47165 * 179.97438 * 4 2 1 29 29 H 1.08992 * 109.47412 * 300.00019 * 4 2 1 30 30 H 1.09000 * 109.47106 * 54.99780 * 5 2 1 31 31 H 1.08998 * 109.47004 * 174.99715 * 5 2 1 32 32 H 1.09002 * 113.61168 * 254.52929 * 8 6 5 33 33 H 1.08996 * 113.61356 * 25.34647 * 8 6 5 34 34 H 0.97000 * 120.00591 * 325.00166 * 11 9 8 35 35 H 1.07999 * 125.20832 * 0.02691 * 16 15 12 36 36 H 1.08997 * 109.47017 * 124.95986 * 19 18 17 37 37 H 0.96694 * 114.00068 * 60.00424 * 20 19 18 38 38 H 1.48498 * 109.99617 * 179.97438 * 21 19 18 39 39 H 1.48497 * 110.00278 * 301.31955 * 21 19 18 40 40 H 1.07995 * 122.54338 * 180.02562 * 22 18 17 41 41 H 1.08993 * 113.61831 * 270.88366 * 23 9 8 42 42 H 1.09005 * 113.61299 * 139.97836 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9585 -0.6925 -1.1995 5 6 1.9587 -0.6926 1.1993 6 6 1.5540 0.0974 2.4455 7 1 0.5238 0.4515 2.4062 8 6 1.9137 -0.6061 3.7648 9 6 2.3148 0.7778 4.3022 10 1 3.2164 0.7639 4.9145 11 7 1.2103 1.5052 4.9323 12 16 1.4993 2.4779 6.2410 13 8 0.2513 3.0597 6.5920 14 8 2.2811 1.7107 7.1462 15 6 2.5274 3.7993 5.6918 16 6 3.8592 3.7326 5.7229 17 16 4.5394 5.2290 5.0968 18 6 2.9292 5.8837 4.8286 19 6 2.6292 7.2482 4.2636 20 8 1.9777 8.0424 5.2571 21 14 4.2201 8.0729 3.7543 22 6 2.0141 4.9874 5.2010 23 6 2.5665 1.1853 2.8409 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.5952 -0.1785 -2.0894 28 1 3.0485 -0.6921 -1.1998 29 1 1.5952 -1.7201 -1.1995 30 1 1.5240 -1.6912 1.2452 31 1 3.0449 -0.7709 1.1556 32 1 1.0548 -1.0410 4.2760 33 1 2.7493 -1.3003 3.6756 34 1 0.3096 1.4171 4.5831 35 1 4.4323 2.8882 6.0763 36 1 1.9782 7.1468 3.3952 37 1 2.5003 8.1746 6.0598 38 1 3.9378 9.4192 3.1948 39 1 5.1291 8.1884 4.9228 40 1 0.9532 5.1744 5.1250 41 1 3.5814 0.9819 2.4995 42 1 2.2346 2.1967 2.6063 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607760_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:34:21 Heat of formation + Delta-G solvation = 60.884455 kcal Electronic energy + Delta-G solvation = -25319.510155 eV Core-core repulsion = 21639.423285 eV Total energy + Delta-G solvation = -3680.086870 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.098 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.07199 -39.77063 -39.53227 -38.44363 -37.71685 -37.09214 -34.12475 -31.88685 -29.82449 -29.34294 -27.24112 -26.74133 -25.74307 -24.95019 -23.78487 -21.54089 -20.87952 -20.19938 -19.30245 -19.11689 -18.65691 -17.96789 -17.73826 -17.63142 -17.11115 -17.01505 -16.44828 -16.06948 -15.63954 -15.35930 -15.24377 -14.97739 -14.32769 -14.27072 -14.18944 -13.88923 -13.76921 -13.64585 -13.42705 -13.40135 -13.31070 -13.23491 -13.17523 -13.03707 -12.98110 -12.91348 -12.58687 -12.38001 -11.83943 -11.70697 -11.53056 -11.26010 -10.87851 -10.49057 -10.25152 -9.85313 -5.17888 -0.84078 -0.50667 0.33122 0.58881 0.92990 1.08153 1.16356 1.47069 1.86746 2.01566 2.65166 2.96376 3.02609 3.15387 3.25154 3.28565 3.48228 3.52134 3.59272 3.76974 3.82301 3.87946 3.96093 4.14525 4.22529 4.27534 4.33299 4.41339 4.42647 4.47059 4.56229 4.62672 4.73670 4.81630 4.88389 4.88773 4.91160 4.92530 5.01261 5.03423 5.11155 5.18144 5.48978 6.04374 6.28185 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.011400 B = 0.004217 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.483578 B = 6638.223633 C = 7999.251266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.371 5.371 3 H 0.438 0.562 4 C -0.046 4.046 5 C 0.008 3.992 6 C -0.130 4.130 7 H 0.124 0.876 8 C -0.134 4.134 9 C 0.093 3.907 10 H 0.100 0.900 11 N -1.081 6.081 12 S 2.723 3.277 13 O -0.994 6.994 14 O -0.987 6.987 15 C -0.687 4.687 16 C -0.084 4.084 17 S 0.184 5.816 18 C -0.230 4.230 19 C -0.037 4.037 20 O -0.544 6.544 21 Si 0.725 3.275 22 C -0.051 4.051 23 C -0.152 4.152 24 H 0.121 0.879 25 H 0.125 0.875 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.127 0.873 29 H 0.117 0.883 30 H 0.136 0.864 31 H 0.148 0.852 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.430 0.570 35 H 0.203 0.797 36 H 0.148 0.852 37 H 0.388 0.612 38 H -0.283 1.283 39 H -0.271 1.271 40 H 0.151 0.849 41 H 0.125 0.875 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.140 -18.273 -26.284 32.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 N 0.053 4.947 3 H 0.274 0.726 4 C -0.188 4.188 5 C -0.114 4.114 6 C -0.149 4.149 7 H 0.142 0.858 8 C -0.174 4.174 9 C -0.015 4.015 10 H 0.118 0.882 11 N -0.844 5.844 12 S 2.811 3.189 13 O -0.984 6.984 14 O -0.977 6.977 15 C -0.788 4.788 16 C -0.223 4.223 17 S 0.448 5.552 18 C -0.347 4.347 19 C -0.148 4.148 20 O -0.353 6.353 21 Si 0.628 3.372 22 C -0.080 4.080 23 C -0.191 4.191 24 H 0.139 0.861 25 H 0.144 0.856 26 H 0.138 0.862 27 H 0.142 0.858 28 H 0.146 0.854 29 H 0.136 0.864 30 H 0.154 0.846 31 H 0.166 0.834 32 H 0.092 0.908 33 H 0.135 0.865 34 H 0.268 0.732 35 H 0.220 0.780 36 H 0.165 0.835 37 H 0.237 0.763 38 H -0.209 1.209 39 H -0.197 1.197 40 H 0.169 0.831 41 H 0.143 0.857 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.463 -17.376 -25.936 31.252 hybrid contribution -1.767 0.759 1.437 2.400 sum -0.304 -16.617 -24.499 29.605 Atomic orbital electron populations 1.24184 0.76589 1.09516 1.09450 1.44795 1.15681 1.19537 1.14708 0.72571 1.24123 1.05850 1.02253 0.86607 1.23941 1.06035 0.99470 0.81928 1.23093 1.01880 0.96907 0.93009 0.85808 1.23340 1.03615 0.95496 0.94967 1.22030 0.88944 0.94503 0.96002 0.88174 1.54961 1.17648 1.60214 1.51557 1.00849 0.72149 0.72752 0.73118 1.93582 1.43540 1.78909 1.82361 1.93590 1.72689 1.69903 1.61532 1.29744 1.08051 1.18460 1.22530 1.26210 0.96317 1.02881 0.96892 1.84628 1.06383 1.07659 1.56502 1.25019 0.96403 1.02012 1.11307 1.24586 1.08720 0.87382 0.94161 1.86632 1.46403 1.71859 1.30402 0.94854 0.74468 0.83711 0.84121 1.19622 1.01401 0.90322 0.96670 1.23794 1.01443 1.00235 0.93589 0.86060 0.85641 0.86226 0.85831 0.85419 0.86426 0.84574 0.83432 0.90788 0.86527 0.73180 0.77983 0.83491 0.76281 1.20914 1.19687 0.83117 0.85660 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 3.54 8.97 127.69 1.15 4.68 16 2 N -0.37 25.11 0.66 -948.85 -0.62 24.49 16 3 H 0.44 -31.06 8.44 -89.69 -0.76 -31.82 16 4 C -0.05 3.04 9.19 127.69 1.17 4.21 16 5 C 0.01 -0.52 4.48 86.30 0.39 -0.13 16 6 C -0.13 7.24 3.40 -10.27 -0.03 7.20 16 7 H 0.12 -7.10 6.06 -2.39 -0.01 -7.11 16 8 C -0.13 6.09 7.43 31.12 0.23 6.32 16 9 C 0.09 -3.69 4.51 45.52 0.21 -3.49 16 10 H 0.10 -3.69 7.77 -2.39 -0.02 -3.71 16 11 N -1.08 36.33 5.73 -167.20 -0.96 35.38 16 12 S 2.72 -56.15 5.77 -56.49 -0.33 -56.48 16 13 O -0.99 11.34 17.63 -128.00 -2.26 9.08 16 14 O -0.99 13.04 17.16 -128.00 -2.20 10.85 16 15 C -0.69 15.56 5.86 21.21 0.12 15.69 16 16 C -0.08 2.10 10.70 66.72 0.71 2.81 16 17 S 0.18 -4.44 20.59 -56.49 -1.16 -5.61 16 18 C -0.23 5.02 5.70 24.59 0.14 5.16 16 19 C -0.04 0.77 2.96 71.24 0.21 0.98 16 20 O -0.54 7.98 12.88 -148.98 -1.92 6.06 16 21 Si 0.72 -14.58 30.98 68.60 2.13 -12.46 16 22 C -0.05 1.07 9.59 21.22 0.20 1.28 16 23 C -0.15 7.67 7.43 31.12 0.23 7.90 16 24 H 0.12 -7.68 6.10 -2.38 -0.01 -7.69 16 25 H 0.13 -7.99 8.14 -2.39 -0.02 -8.01 16 26 H 0.12 -7.51 8.11 -2.39 -0.02 -7.53 16 27 H 0.12 -7.96 8.14 -2.39 -0.02 -7.98 16 28 H 0.13 -8.37 8.11 -2.39 -0.02 -8.39 16 29 H 0.12 -7.50 8.14 -2.39 -0.02 -7.52 16 30 H 0.14 -8.62 8.09 -2.39 -0.02 -8.64 16 31 H 0.15 -9.68 7.79 -2.39 -0.02 -9.70 16 32 H 0.07 -3.02 8.14 -2.39 -0.02 -3.04 16 33 H 0.12 -5.49 8.10 -2.39 -0.02 -5.50 16 34 H 0.43 -16.34 8.79 -96.75 -0.85 -17.19 16 35 H 0.20 -5.90 8.00 -2.91 -0.02 -5.92 16 36 H 0.15 -3.68 7.96 -2.39 -0.02 -3.70 16 37 H 0.39 -7.35 8.70 -74.06 -0.64 -7.99 16 38 H -0.28 3.26 7.11 99.48 0.71 3.97 16 39 H -0.27 4.03 7.11 99.48 0.71 4.74 16 40 H 0.15 -3.04 7.96 -2.91 -0.02 -3.07 16 41 H 0.13 -6.78 7.90 -2.39 -0.02 -6.79 16 42 H 0.09 -4.57 8.14 -2.38 -0.02 -4.59 16 Total: 1.00 -89.51 364.42 -3.75 -93.26 By element: Atomic # 1 Polarization: -156.02 SS G_CDS: -1.16 Total: -157.19 kcal Atomic # 6 Polarization: 47.88 SS G_CDS: 4.73 Total: 52.61 kcal Atomic # 7 Polarization: 61.45 SS G_CDS: -1.58 Total: 59.87 kcal Atomic # 8 Polarization: 32.36 SS G_CDS: -6.37 Total: 25.99 kcal Atomic # 14 Polarization: -14.58 SS G_CDS: 2.13 Total: -12.46 kcal Atomic # 16 Polarization: -60.60 SS G_CDS: -1.49 Total: -62.09 kcal Total: -89.51 -3.75 -93.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607760_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.147 kcal (2) G-P(sol) polarization free energy of solvation -89.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds