Wall clock time and date at job start Mon Mar 8 2021 10:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33392 * 125.20142 * 2 1 4 4 C 1.50699 * 122.54143 * 359.97273 * 3 2 1 5 5 O 1.42897 * 109.47181 * 76.21983 * 4 3 2 6 6 Si 1.86298 * 109.47372 * 316.21697 * 4 3 2 7 7 C 1.38428 * 114.91476 * 180.21493 * 3 2 1 8 8 S 1.76201 * 122.53656 * 179.75983 * 7 3 2 9 9 O 1.42111 * 106.40155 * 25.17508 * 8 7 3 10 10 O 1.42093 * 106.40313 * 158.09266 * 8 7 3 11 11 N 1.65600 * 107.21870 * 271.63475 * 8 7 3 12 12 C 1.46500 * 119.99811 * 65.00194 * 11 8 7 13 13 H 1.08999 * 112.85170 * 344.66159 * 12 11 8 14 14 C 1.53778 * 113.61854 * 115.86590 * 12 11 8 15 15 C 1.54055 * 86.98533 * 89.15531 * 14 12 11 16 16 H 1.08995 * 113.61282 * 270.88541 * 15 14 12 17 17 C 1.53008 * 113.61438 * 139.98176 * 15 14 12 18 18 N 1.46904 * 109.47061 * 87.50733 * 17 15 14 19 19 H 1.00904 * 109.46712 * 304.99687 * 18 17 15 20 20 C 1.46896 * 109.46909 * 64.99766 * 18 17 15 21 21 C 1.46894 * 109.46868 * 184.99709 * 18 17 15 22 22 C 1.53773 * 87.07482 * 25.43603 * 15 14 12 23 23 C 1.33385 * 114.92229 * 359.48687 * 7 3 2 24 24 C 1.50700 * 125.19972 * 180.25468 * 23 7 3 25 25 S 1.75880 * 109.59459 * 0.27511 * 23 7 3 26 26 H 1.09003 * 109.47165 * 184.89165 * 1 2 3 27 27 H 1.09004 * 109.46619 * 304.89061 * 1 2 3 28 28 H 1.08998 * 109.47268 * 64.88616 * 1 2 3 29 29 H 1.09010 * 109.46630 * 196.21664 * 4 3 2 30 30 H 0.96700 * 114.00112 * 65.81920 * 5 4 3 31 31 H 1.48493 * 110.00055 * 174.76397 * 6 4 3 32 32 H 1.48508 * 109.99885 * 296.08476 * 6 4 3 33 33 H 0.96998 * 119.99912 * 244.99882 * 11 8 7 34 34 H 1.08998 * 113.62010 * 203.66118 * 14 12 11 35 35 H 1.09002 * 113.60902 * 334.56283 * 14 12 11 36 36 H 1.08995 * 109.46872 * 207.50482 * 17 15 14 37 37 H 1.08993 * 109.47218 * 327.50228 * 17 15 14 38 38 H 1.08996 * 109.47539 * 299.99734 * 20 18 17 39 39 H 1.09000 * 109.47570 * 60.00020 * 20 18 17 40 40 H 1.09002 * 109.46910 * 180.02562 * 20 18 17 41 41 H 1.08997 * 109.47437 * 60.00056 * 21 18 17 42 42 H 1.09002 * 109.47143 * 179.97438 * 21 18 17 43 43 H 1.08996 * 109.47451 * 299.99996 * 21 18 17 44 44 H 1.09006 * 113.61369 * 220.01659 * 22 15 14 45 45 H 1.09000 * 113.62046 * 89.11943 * 22 15 14 46 46 H 1.09001 * 109.47293 * 90.00350 * 24 23 7 47 47 H 1.08999 * 109.46969 * 209.99890 * 24 23 7 48 48 H 1.09000 * 109.47438 * 329.99692 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7051 2.4847 -0.0006 5 8 1.2272 2.8044 1.3076 6 14 0.2968 2.5789 -1.2165 7 6 3.6380 0.8428 -0.0047 8 16 4.8356 2.1352 -0.0118 9 8 4.2057 3.2693 0.5683 10 8 6.0379 1.5708 0.4933 11 7 5.1297 2.5223 -1.5948 12 6 4.0648 3.1020 -2.4171 13 1 3.0762 2.9856 -1.9731 14 6 4.3627 4.5344 -2.8906 15 6 5.0401 3.9001 -4.1203 16 1 6.0990 3.6871 -3.9740 17 6 4.7571 4.6433 -5.4274 18 7 5.7494 5.7113 -5.6083 19 1 5.7500 6.3108 -4.7966 20 6 7.0821 5.1175 -5.7794 21 6 5.4082 6.5002 -6.7995 22 6 4.1297 2.6816 -3.8949 23 6 3.9750 -0.4477 0.0023 24 6 5.3860 -0.9770 0.0047 25 16 2.5209 -1.4371 0.0077 26 1 -0.3633 -1.0239 0.0876 27 1 -0.3633 0.5879 0.8430 28 1 -0.3634 0.4361 -0.9305 29 1 2.4810 3.1946 -0.2875 30 1 1.9225 2.8623 1.9771 31 1 -0.3555 3.9104 -1.1360 32 1 0.7983 2.3414 -2.5940 33 1 6.0070 2.3652 -1.9776 34 1 3.4687 5.1092 -3.1326 35 1 5.0515 5.0746 -2.2410 36 1 4.8180 3.9456 -6.2626 37 1 3.7583 5.0780 -5.3893 38 1 7.3354 4.5322 -4.8956 39 1 7.0815 4.4699 -6.6562 40 1 7.8185 5.9100 -5.9131 41 1 4.4193 6.9408 -6.6725 42 1 6.1442 7.2929 -6.9334 43 1 5.4075 5.8526 -7.6762 44 1 4.6303 1.7267 -4.0557 45 1 3.1720 2.7505 -4.4110 46 1 5.7266 -1.0990 1.0329 47 1 5.4134 -1.9408 -0.5038 48 1 6.0386 -0.2743 -0.5133 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607760_15065288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:34:25 Heat of formation + Delta-G solvation = 63.741068 kcal Electronic energy + Delta-G solvation = -30695.866239 eV Core-core repulsion = 26704.828003 eV Total energy + Delta-G solvation = -3991.038236 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.129 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.17573 -40.39071 -39.86038 -38.74546 -37.23285 -37.05048 -34.39896 -34.28989 -30.88834 -29.95267 -29.40418 -28.12867 -26.90919 -26.04035 -25.78814 -23.92491 -23.31320 -21.27523 -20.67709 -20.08528 -19.46594 -19.08620 -18.63037 -18.26307 -17.76194 -17.46121 -17.18594 -16.90259 -16.30984 -16.17947 -15.66173 -15.39768 -15.34960 -15.12398 -14.79891 -14.47957 -14.34926 -14.23306 -14.17485 -13.87770 -13.75661 -13.58862 -13.51464 -13.49866 -13.45838 -13.37062 -13.28871 -13.15971 -13.05482 -12.95460 -12.79269 -12.54245 -12.20559 -11.97173 -11.88140 -11.73746 -11.47082 -11.27924 -11.03790 -10.67234 -10.06649 -9.59811 -4.82058 -0.94036 -0.50145 0.33578 0.63522 0.78710 1.00349 1.25829 1.43079 1.84433 1.92034 2.46722 2.87649 2.93250 3.02976 3.13035 3.35288 3.36351 3.41112 3.58739 3.65749 3.67905 3.77859 3.83246 3.92008 3.97303 4.10922 4.14946 4.18868 4.24686 4.33154 4.36096 4.45091 4.46971 4.48244 4.56697 4.62034 4.63028 4.69213 4.71710 4.80550 4.85369 4.86085 4.86802 4.94479 5.00599 5.01473 5.03797 5.22512 5.30428 5.90890 6.48824 Molecular weight = 362.13amu Principal moments of inertia in cm(-1) A = 0.012101 B = 0.004066 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.366482 B = 6885.266150 C = 7733.598468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.173 4.173 3 C -0.095 4.095 4 C -0.096 4.096 5 O -0.544 6.544 6 Si 0.735 3.265 7 C -0.696 4.696 8 S 2.715 3.285 9 O -0.976 6.976 10 O -0.976 6.976 11 N -1.080 6.080 12 C 0.086 3.914 13 H 0.079 0.921 14 C -0.161 4.161 15 C -0.124 4.124 16 H 0.133 0.867 17 C 0.006 3.994 18 N -0.373 5.373 19 H 0.436 0.564 20 C -0.055 4.055 21 C -0.046 4.046 22 C -0.131 4.131 23 C -0.059 4.059 24 C -0.118 4.118 25 S 0.176 5.824 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.372 0.628 31 H -0.284 1.284 32 H -0.218 1.218 33 H 0.433 0.567 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.090 0.910 45 H 0.112 0.888 46 H 0.092 0.908 47 H 0.100 0.900 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.635 11.995 -25.899 29.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.291 4.291 3 C -0.105 4.105 4 C -0.206 4.206 5 O -0.349 6.349 6 Si 0.632 3.368 7 C -0.796 4.796 8 S 2.803 3.197 9 O -0.965 6.965 10 O -0.966 6.966 11 N -0.843 5.843 12 C -0.021 4.021 13 H 0.097 0.903 14 C -0.200 4.200 15 C -0.142 4.142 16 H 0.151 0.849 17 C -0.116 4.116 18 N 0.051 4.949 19 H 0.272 0.728 20 C -0.198 4.198 21 C -0.188 4.188 22 C -0.170 4.170 23 C -0.181 4.181 24 C -0.177 4.177 25 S 0.443 5.557 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.112 0.888 30 H 0.221 0.779 31 H -0.210 1.210 32 H -0.141 1.141 33 H 0.272 0.728 34 H 0.135 0.865 35 H 0.106 0.894 36 H 0.164 0.836 37 H 0.161 0.839 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.109 0.891 45 H 0.131 0.869 46 H 0.110 0.890 47 H 0.118 0.882 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.667 11.048 -26.299 29.538 hybrid contribution 1.672 1.294 1.308 2.486 sum 9.340 12.341 -24.991 29.395 Atomic orbital electron populations 1.20593 0.85822 1.04823 1.04196 1.24757 1.01479 0.94917 1.07978 1.18645 0.90369 0.97284 1.04203 1.26031 1.09778 0.91258 0.93484 1.86637 1.37746 1.92624 1.17942 0.91917 0.84159 0.85596 0.75123 1.29480 1.11888 1.13455 1.24739 1.01140 0.72335 0.72956 0.73259 1.93537 1.77355 1.49611 1.76027 1.93595 1.45350 1.79412 1.78224 1.54984 1.21511 1.77725 1.30069 1.22092 0.89385 0.96959 0.93674 0.90265 1.23864 1.03123 0.95379 0.97630 1.23127 1.02351 0.96329 0.92435 0.84923 1.23953 0.94781 0.91557 1.01282 1.44818 1.15038 1.16474 1.18588 0.72758 1.24215 0.81885 1.04576 1.09079 1.24130 1.07817 0.99322 0.87554 1.23354 1.01966 0.99230 0.92491 1.24781 1.01497 0.95171 0.96618 1.21027 0.87640 1.03617 1.05373 1.84576 0.94727 1.08002 1.68414 0.88199 0.88495 0.87252 0.88825 0.77945 1.21035 1.14093 0.72784 0.86549 0.89407 0.83629 0.83931 0.86048 0.85757 0.85599 0.85765 0.85737 0.85999 0.89087 0.86925 0.88981 0.88160 0.87941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 2.10 8.36 71.24 0.60 2.70 16 2 C -0.17 3.01 6.11 24.59 0.15 3.16 16 3 C -0.09 1.53 4.68 -20.92 -0.10 1.43 16 4 C -0.10 1.49 1.51 71.24 0.11 1.60 16 5 O -0.54 5.87 12.63 -148.98 -1.88 3.99 16 6 Si 0.74 -14.31 26.45 68.60 1.81 -12.50 16 7 C -0.70 11.72 5.86 21.22 0.12 11.84 16 8 S 2.71 -50.65 5.26 -56.49 -0.30 -50.94 16 9 O -0.98 12.73 14.51 -128.00 -1.86 10.87 16 10 O -0.98 12.95 14.95 -128.00 -1.91 11.03 16 11 N -1.08 33.63 5.73 -167.20 -0.96 32.68 16 12 C 0.09 -3.02 4.34 45.52 0.20 -2.82 16 13 H 0.08 -2.33 4.05 -2.39 -0.01 -2.34 16 14 C -0.16 7.07 7.45 31.21 0.23 7.30 16 15 C -0.12 6.55 3.41 -10.17 -0.03 6.51 16 16 H 0.13 -7.45 6.09 -2.39 -0.01 -7.46 16 17 C 0.01 -0.38 4.48 86.31 0.39 0.01 16 18 N -0.37 24.48 0.66 -948.87 -0.62 23.86 16 19 H 0.44 -29.62 8.44 -89.69 -0.76 -30.38 16 20 C -0.06 3.51 8.98 127.69 1.15 4.65 16 21 C -0.05 2.96 9.19 127.69 1.17 4.13 16 22 C -0.13 5.69 7.42 31.12 0.23 5.93 16 23 C -0.06 1.03 6.50 24.59 0.16 1.19 16 24 C -0.12 2.32 9.11 71.24 0.65 2.97 16 25 S 0.18 -3.12 23.31 -56.49 -1.32 -4.44 16 26 H 0.10 -2.36 8.14 -2.39 -0.02 -2.38 16 27 H 0.10 -1.96 7.84 -2.39 -0.02 -1.98 16 28 H 0.11 -2.83 4.68 -2.39 -0.01 -2.84 16 29 H 0.09 -1.59 3.27 -2.38 -0.01 -1.60 16 30 H 0.37 -4.59 9.09 -74.06 -0.67 -5.26 16 31 H -0.28 3.55 7.11 99.48 0.71 4.26 16 32 H -0.22 5.26 7.11 99.48 0.71 5.97 16 33 H 0.43 -16.20 8.81 -96.75 -0.85 -17.05 16 34 H 0.12 -5.37 7.90 -2.39 -0.02 -5.38 16 35 H 0.09 -3.71 8.14 -2.39 -0.02 -3.73 16 36 H 0.15 -9.14 8.09 -2.39 -0.02 -9.16 16 37 H 0.14 -8.88 7.79 -2.39 -0.02 -8.90 16 38 H 0.12 -7.59 6.10 -2.39 -0.01 -7.60 16 39 H 0.12 -7.80 8.11 -2.39 -0.02 -7.82 16 40 H 0.13 -7.89 8.14 -2.39 -0.02 -7.91 16 41 H 0.12 -7.84 8.11 -2.39 -0.02 -7.86 16 42 H 0.12 -7.82 8.14 -2.39 -0.02 -7.84 16 43 H 0.12 -7.67 8.14 -2.39 -0.02 -7.68 16 44 H 0.09 -3.84 8.14 -2.38 -0.02 -3.86 16 45 H 0.11 -5.00 8.10 -2.39 -0.02 -5.02 16 46 H 0.09 -1.60 8.14 -2.39 -0.02 -1.62 16 47 H 0.10 -2.33 8.14 -2.39 -0.02 -2.35 16 48 H 0.10 -2.22 6.18 -2.39 -0.01 -2.23 16 Total: 1.00 -81.65 382.90 -3.24 -84.90 By element: Atomic # 1 Polarization: -148.80 SS G_CDS: -1.23 Total: -150.03 kcal Atomic # 6 Polarization: 45.57 SS G_CDS: 5.02 Total: 50.59 kcal Atomic # 7 Polarization: 58.11 SS G_CDS: -1.58 Total: 56.53 kcal Atomic # 8 Polarization: 31.54 SS G_CDS: -5.65 Total: 25.89 kcal Atomic # 14 Polarization: -14.31 SS G_CDS: 1.81 Total: -12.50 kcal Atomic # 16 Polarization: -53.77 SS G_CDS: -1.61 Total: -55.39 kcal Total: -81.65 -3.24 -84.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607760_15065288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.638 kcal (2) G-P(sol) polarization free energy of solvation -81.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds