Wall clock time and date at job start Mon Mar 8 2021 10:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 H 1.00903 * 109.46852 * 2 1 4 4 C 1.46905 * 109.46676 * 119.99616 * 2 1 3 5 5 C 1.46895 * 109.47536 * 239.99919 * 2 1 3 6 6 C 1.52995 * 109.47166 * 174.99889 * 5 2 1 7 7 H 1.08996 * 112.85061 * 316.19538 * 6 5 2 8 8 C 1.53786 * 113.61547 * 87.50425 * 6 5 2 9 9 C 1.53777 * 87.08170 * 139.98141 * 8 6 5 10 10 H 1.09002 * 113.68781 * 220.00554 * 9 8 6 11 11 N 1.46493 * 113.61513 * 89.11748 * 9 8 6 12 12 S 1.65600 * 120.00076 * 117.71573 * 11 9 8 13 13 O 1.42102 * 106.40536 * 178.11644 * 12 11 9 14 14 O 1.42105 * 106.40315 * 311.03956 * 12 11 9 15 15 C 1.76203 * 107.21752 * 64.57846 * 12 11 9 16 16 C 1.38211 * 120.00302 * 64.05405 * 15 12 11 17 17 C 1.50700 * 119.99399 * 359.97438 * 16 15 12 18 18 O 1.42899 * 109.47196 * 75.79995 * 17 16 15 19 19 Si 1.86307 * 109.46987 * 195.79575 * 17 16 15 20 20 C 1.38254 * 120.00573 * 180.02562 * 16 15 12 21 21 C 1.38217 * 119.99735 * 359.97438 * 20 16 15 22 22 C 1.38256 * 120.00069 * 359.97023 * 21 20 16 23 23 C 1.38221 * 120.00033 * 359.81844 * 22 21 20 24 24 C 1.53775 * 87.08426 * 334.56594 * 9 8 6 25 25 H 1.09010 * 109.46857 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47307 * 299.99930 * 1 2 3 27 27 H 1.09001 * 109.47142 * 60.00767 * 1 2 3 28 28 H 1.08996 * 109.47142 * 60.00574 * 4 2 1 29 29 H 1.09001 * 109.46714 * 180.02562 * 4 2 1 30 30 H 1.09000 * 109.47178 * 300.00172 * 4 2 1 31 31 H 1.08998 * 109.46766 * 54.99766 * 5 2 1 32 32 H 1.08998 * 109.46882 * 294.99941 * 5 2 1 33 33 H 1.08998 * 113.61205 * 25.42959 * 8 6 5 34 34 H 1.08999 * 113.61275 * 254.53366 * 8 6 5 35 35 H 0.96997 * 120.00334 * 297.43791 * 11 9 8 36 36 H 1.08997 * 109.47542 * 315.79376 * 17 16 15 37 37 H 0.96700 * 114.00282 * 184.95820 * 18 17 16 38 38 H 1.48495 * 109.99964 * 300.00415 * 19 17 16 39 39 H 1.48500 * 109.99849 * 61.32038 * 19 17 16 40 40 H 1.07993 * 120.00098 * 179.97438 * 20 16 15 41 41 H 1.08002 * 120.00177 * 179.97438 * 21 20 16 42 42 H 1.08004 * 120.00236 * 179.97438 * 22 21 20 43 43 H 1.07996 * 120.00131 * 180.22810 * 23 22 21 44 44 H 1.09000 * 113.61901 * 139.97810 * 24 9 8 45 45 H 1.09002 * 113.62110 * 270.80495 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9586 -0.6925 1.1996 5 6 1.9588 -0.6925 -1.1994 6 6 3.4835 -0.5844 -1.2637 7 1 3.8473 0.4157 -1.0284 8 6 4.2131 -1.7028 -0.5008 9 6 5.2161 -1.7357 -1.6660 10 1 5.5295 -2.7415 -1.9458 11 7 6.3431 -0.8152 -1.4964 12 16 7.8868 -1.4061 -1.3952 13 8 8.7420 -0.2770 -1.2811 14 8 7.8529 -2.4554 -0.4375 15 6 8.2599 -2.1583 -2.9443 16 6 8.3124 -1.3890 -4.0913 17 6 8.0499 0.0931 -4.0171 18 8 9.1914 0.7520 -3.4650 19 14 7.7200 0.7519 -5.7283 20 6 8.6046 -1.9792 -5.3069 21 6 8.8448 -3.3386 -5.3751 22 6 8.7935 -4.1081 -4.2276 23 6 8.5056 -3.5172 -3.0116 24 6 4.0892 -1.1737 -2.5486 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.5953 -1.7201 1.1996 29 1 3.0486 -0.6921 1.1998 30 1 1.5952 -0.1786 2.0895 31 1 1.5241 -0.2330 -2.0871 32 1 1.6704 -1.7427 -1.1557 33 1 3.6284 -2.6173 -0.4020 34 1 4.6501 -1.3747 0.4424 35 1 6.1855 0.1406 -1.4474 36 1 7.1823 0.2773 -3.3834 37 1 9.0656 1.6993 -3.3171 38 1 8.8955 0.5070 -6.6021 39 1 6.5163 0.0975 -6.3011 40 1 8.6452 -1.3781 -6.2032 41 1 9.0727 -3.7998 -6.3247 42 1 8.9808 -5.1704 -4.2808 43 1 8.4691 -4.1176 -2.1147 44 1 4.4261 -0.4185 -3.2587 45 1 3.4714 -1.9436 -3.0109 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607760_2726874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:34:30 Heat of formation + Delta-G solvation = 96.465857 kcal Electronic energy + Delta-G solvation = -27696.210932 eV Core-core repulsion = 23928.514741 eV Total energy + Delta-G solvation = -3767.696191 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.142 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -44.56106 -41.74736 -41.50908 -39.29060 -38.24727 -37.72528 -35.75624 -33.84632 -33.33376 -32.12985 -31.96091 -28.56396 -28.16509 -27.81747 -25.98571 -25.34637 -23.59019 -22.77035 -21.99013 -21.38159 -20.35739 -20.02394 -19.70921 -19.44371 -19.22054 -18.66420 -18.02085 -17.78666 -17.36607 -17.27136 -16.82075 -16.67189 -16.33394 -16.22364 -16.06087 -16.02566 -15.86996 -15.70528 -15.62125 -15.40673 -15.03884 -14.93704 -14.74543 -14.52643 -14.39172 -14.04783 -13.94942 -13.82882 -13.79061 -13.53200 -13.16465 -13.02002 -12.98414 -12.64380 -11.96463 -11.38293 -11.17492 -10.97842 -5.91798 -1.67730 -1.48194 -1.18645 -0.79603 0.25962 0.46654 0.51110 0.67253 0.68247 0.78579 1.04668 1.25611 1.35011 1.43965 1.54607 1.64302 1.71143 1.74300 1.82454 1.90543 1.97468 2.05267 2.15224 2.23969 2.27685 2.31602 2.33558 2.43929 2.65516 2.75933 2.85358 2.89966 2.91635 2.97050 3.06209 3.08193 3.15977 3.27244 3.33248 3.40737 3.64850 3.67325 3.83083 4.04637 4.22851 4.37709 4.56566 4.79654 5.82898 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.004425 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.216201 B = 6325.625265 C = 6797.696941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.386 5.386 3 H 0.427 0.573 4 C -0.057 4.057 5 C 0.000 4.000 6 C -0.148 4.148 7 H 0.115 0.885 8 C -0.158 4.158 9 C 0.131 3.869 10 H 0.112 0.888 11 N -1.104 6.104 12 S 2.688 3.312 13 O -0.917 6.917 14 O -0.953 6.953 15 C -0.660 4.660 16 C 0.027 3.973 17 C -0.101 4.101 18 O -0.513 6.513 19 Si 0.692 3.308 20 C -0.143 4.143 21 C -0.053 4.053 22 C -0.131 4.131 23 C -0.022 4.022 24 C -0.133 4.133 25 H 0.122 0.878 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.418 0.582 36 H 0.066 0.934 37 H 0.386 0.614 38 H -0.244 1.244 39 H -0.253 1.253 40 H 0.132 0.868 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.148 0.852 44 H 0.092 0.908 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.959 5.744 7.435 28.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 N 0.039 4.961 3 H 0.261 0.739 4 C -0.198 4.198 5 C -0.122 4.122 6 C -0.166 4.166 7 H 0.133 0.867 8 C -0.197 4.197 9 C 0.023 3.977 10 H 0.130 0.870 11 N -0.862 5.862 12 S 2.777 3.223 13 O -0.906 6.906 14 O -0.943 6.943 15 C -0.746 4.746 16 C 0.025 3.975 17 C -0.212 4.212 18 O -0.319 6.319 19 Si 0.592 3.408 20 C -0.161 4.161 21 C -0.071 4.071 22 C -0.150 4.150 23 C -0.042 4.042 24 C -0.173 4.173 25 H 0.140 0.860 26 H 0.143 0.857 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.124 0.876 34 H 0.110 0.890 35 H 0.253 0.747 36 H 0.084 0.916 37 H 0.234 0.766 38 H -0.169 1.169 39 H -0.177 1.177 40 H 0.149 0.851 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.166 0.834 44 H 0.111 0.889 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -26.285 4.536 7.268 27.646 hybrid contribution -0.019 -0.023 -0.445 0.446 sum -26.304 4.513 6.823 27.546 Atomic orbital electron populations 1.24141 0.75645 1.09624 1.09573 1.45088 1.16206 1.18880 1.15960 0.73864 1.24335 1.06406 1.02434 0.86665 1.24124 0.98251 1.02580 0.87231 1.23226 0.90026 1.01798 1.01588 0.86731 1.23842 0.98170 0.98362 0.99375 1.21463 0.86459 0.93950 0.95854 0.86985 1.55723 1.23261 1.16761 1.90455 1.02368 0.72168 0.74135 0.73633 1.93736 1.61662 1.49861 1.85377 1.93617 1.85694 1.58059 1.56889 1.30689 1.18797 1.04735 1.20427 1.18913 0.93325 0.92865 0.92371 1.25000 0.92752 0.91932 1.11468 1.86707 1.33741 1.26249 1.85225 0.94953 0.80957 0.90352 0.74538 1.21203 1.01624 0.96043 0.97246 1.21549 0.92755 0.93303 0.99474 1.21463 1.00069 1.01125 0.92300 1.21107 0.91527 0.92225 0.99299 1.23389 0.96932 1.01752 0.95248 0.85991 0.85724 0.85856 0.85907 0.85440 0.85824 0.84938 0.85006 0.87562 0.88996 0.74714 0.91610 0.76607 1.16868 1.17750 0.85085 0.84339 0.84131 0.83393 0.88932 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 1.55 9.19 60.07 0.55 2.10 16 2 N -0.39 12.83 0.66 -251.26 -0.17 12.66 16 3 H 0.43 -14.91 8.40 -39.29 -0.33 -15.24 16 4 C -0.06 1.77 8.57 60.07 0.51 2.29 16 5 C 0.00 0.01 4.57 -3.83 -0.02 0.00 16 6 C -0.15 4.04 3.13 -89.80 -0.28 3.75 16 7 H 0.11 -3.27 8.06 -51.93 -0.42 -3.69 16 8 C -0.16 3.77 5.69 -25.92 -0.15 3.63 16 9 C 0.13 -2.60 4.44 -67.13 -0.30 -2.90 16 10 H 0.11 -2.06 8.05 -51.93 -0.42 -2.48 16 11 N -1.10 19.01 4.47 -4.21 -0.02 18.99 16 12 S 2.69 -28.05 4.93 -107.50 -0.53 -28.58 16 13 O -0.92 6.42 15.00 -66.43 -1.00 5.42 16 14 O -0.95 7.30 16.74 -57.17 -0.96 6.34 16 15 C -0.66 5.97 5.87 -39.58 -0.23 5.74 16 16 C 0.03 -0.23 5.28 -104.63 -0.55 -0.78 16 17 C -0.10 1.12 1.83 36.01 0.07 1.19 16 18 O -0.51 4.54 10.45 -57.78 -0.60 3.94 16 19 Si 0.69 -8.11 30.30 -169.99 -5.15 -13.27 16 20 C -0.14 1.16 8.66 -39.58 -0.34 0.81 16 21 C -0.05 0.47 10.05 -39.58 -0.40 0.07 16 22 C -0.13 1.22 10.05 -39.58 -0.40 0.82 16 23 C -0.02 0.20 9.55 -39.58 -0.38 -0.18 16 24 C -0.13 3.10 7.43 -25.92 -0.19 2.91 16 25 H 0.12 -3.85 8.14 -51.92 -0.42 -4.28 16 26 H 0.12 -3.97 8.14 -51.93 -0.42 -4.39 16 27 H 0.12 -3.95 8.11 -51.93 -0.42 -4.37 16 28 H 0.12 -3.81 8.11 -51.93 -0.42 -4.23 16 29 H 0.13 -3.86 5.13 -51.93 -0.27 -4.13 16 30 H 0.12 -3.87 8.14 -51.93 -0.42 -4.29 16 31 H 0.13 -4.18 8.09 -51.93 -0.42 -4.60 16 32 H 0.13 -4.10 7.79 -51.93 -0.40 -4.51 16 33 H 0.11 -2.65 7.90 -51.93 -0.41 -3.06 16 34 H 0.09 -2.12 7.18 -51.93 -0.37 -2.50 16 35 H 0.42 -8.35 8.45 -34.46 -0.29 -8.64 16 36 H 0.07 -1.01 5.81 -51.93 -0.30 -1.31 16 37 H 0.39 -5.22 8.86 45.56 0.40 -4.82 16 38 H -0.24 1.86 6.72 56.52 0.38 2.24 16 39 H -0.25 2.64 7.11 56.52 0.40 3.04 16 40 H 0.13 -1.11 4.91 -52.49 -0.26 -1.37 16 41 H 0.14 -1.50 8.06 -52.49 -0.42 -1.92 16 42 H 0.14 -1.59 8.06 -52.48 -0.42 -2.01 16 43 H 0.15 -1.51 7.34 -52.49 -0.39 -1.89 16 44 H 0.09 -2.06 8.14 -51.93 -0.42 -2.48 16 45 H 0.11 -2.54 8.10 -51.93 -0.42 -2.96 16 LS Contribution 359.65 15.07 5.42 5.42 Total: 1.00 -41.51 359.65 -12.00 -53.50 By element: Atomic # 1 Polarization: -76.99 SS G_CDS: -6.89 Total: -83.88 kcal Atomic # 6 Polarization: 21.56 SS G_CDS: -2.10 Total: 19.45 kcal Atomic # 7 Polarization: 31.83 SS G_CDS: -0.18 Total: 31.65 kcal Atomic # 8 Polarization: 18.26 SS G_CDS: -2.56 Total: 15.70 kcal Atomic # 14 Polarization: -8.11 SS G_CDS: -5.15 Total: -13.27 kcal Atomic # 16 Polarization: -28.05 SS G_CDS: -0.53 Total: -28.58 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -41.51 -12.00 -53.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607760_2726874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.970 kcal (2) G-P(sol) polarization free energy of solvation -41.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds