Wall clock time and date at job start Mon Mar 8 2021 10:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 H 1.00903 * 109.46852 * 2 1 4 4 C 1.46905 * 109.46676 * 119.99616 * 2 1 3 5 5 C 1.46895 * 109.47536 * 239.99919 * 2 1 3 6 6 C 1.52995 * 109.47166 * 174.99889 * 5 2 1 7 7 H 1.08996 * 112.85061 * 316.19538 * 6 5 2 8 8 C 1.53786 * 113.61547 * 87.50425 * 6 5 2 9 9 C 1.53777 * 87.08170 * 139.98141 * 8 6 5 10 10 H 1.09002 * 113.68781 * 220.00554 * 9 8 6 11 11 N 1.46493 * 113.61513 * 89.11748 * 9 8 6 12 12 S 1.65600 * 120.00076 * 117.71573 * 11 9 8 13 13 O 1.42102 * 106.40536 * 178.11644 * 12 11 9 14 14 O 1.42105 * 106.40315 * 311.03956 * 12 11 9 15 15 C 1.76203 * 107.21752 * 64.57846 * 12 11 9 16 16 C 1.38211 * 120.00302 * 64.05405 * 15 12 11 17 17 C 1.50700 * 119.99399 * 359.97438 * 16 15 12 18 18 O 1.42899 * 109.47196 * 75.79995 * 17 16 15 19 19 Si 1.86307 * 109.46987 * 195.79575 * 17 16 15 20 20 C 1.38254 * 120.00573 * 180.02562 * 16 15 12 21 21 C 1.38217 * 119.99735 * 359.97438 * 20 16 15 22 22 C 1.38256 * 120.00069 * 359.97023 * 21 20 16 23 23 C 1.38221 * 120.00033 * 359.81844 * 22 21 20 24 24 C 1.53775 * 87.08426 * 334.56594 * 9 8 6 25 25 H 1.09010 * 109.46857 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47307 * 299.99930 * 1 2 3 27 27 H 1.09001 * 109.47142 * 60.00767 * 1 2 3 28 28 H 1.08996 * 109.47142 * 60.00574 * 4 2 1 29 29 H 1.09001 * 109.46714 * 180.02562 * 4 2 1 30 30 H 1.09000 * 109.47178 * 300.00172 * 4 2 1 31 31 H 1.08998 * 109.46766 * 54.99766 * 5 2 1 32 32 H 1.08998 * 109.46882 * 294.99941 * 5 2 1 33 33 H 1.08998 * 113.61205 * 25.42959 * 8 6 5 34 34 H 1.08999 * 113.61275 * 254.53366 * 8 6 5 35 35 H 0.96997 * 120.00334 * 297.43791 * 11 9 8 36 36 H 1.08997 * 109.47542 * 315.79376 * 17 16 15 37 37 H 0.96700 * 114.00282 * 184.95820 * 18 17 16 38 38 H 1.48495 * 109.99964 * 300.00415 * 19 17 16 39 39 H 1.48500 * 109.99849 * 61.32038 * 19 17 16 40 40 H 1.07993 * 120.00098 * 179.97438 * 20 16 15 41 41 H 1.08002 * 120.00177 * 179.97438 * 21 20 16 42 42 H 1.08004 * 120.00236 * 179.97438 * 22 21 20 43 43 H 1.07996 * 120.00131 * 180.22810 * 23 22 21 44 44 H 1.09000 * 113.61901 * 139.97810 * 24 9 8 45 45 H 1.09002 * 113.62110 * 270.80495 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9586 -0.6925 1.1996 5 6 1.9588 -0.6925 -1.1994 6 6 3.4835 -0.5844 -1.2637 7 1 3.8473 0.4157 -1.0284 8 6 4.2131 -1.7028 -0.5008 9 6 5.2161 -1.7357 -1.6660 10 1 5.5295 -2.7415 -1.9458 11 7 6.3431 -0.8152 -1.4964 12 16 7.8868 -1.4061 -1.3952 13 8 8.7420 -0.2770 -1.2811 14 8 7.8529 -2.4554 -0.4375 15 6 8.2599 -2.1583 -2.9443 16 6 8.3124 -1.3890 -4.0913 17 6 8.0499 0.0931 -4.0171 18 8 9.1914 0.7520 -3.4650 19 14 7.7200 0.7519 -5.7283 20 6 8.6046 -1.9792 -5.3069 21 6 8.8448 -3.3386 -5.3751 22 6 8.7935 -4.1081 -4.2276 23 6 8.5056 -3.5172 -3.0116 24 6 4.0892 -1.1737 -2.5486 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.5953 -1.7201 1.1996 29 1 3.0486 -0.6921 1.1998 30 1 1.5952 -0.1786 2.0895 31 1 1.5241 -0.2330 -2.0871 32 1 1.6704 -1.7427 -1.1557 33 1 3.6284 -2.6173 -0.4020 34 1 4.6501 -1.3747 0.4424 35 1 6.1855 0.1406 -1.4474 36 1 7.1823 0.2773 -3.3834 37 1 9.0656 1.6993 -3.3171 38 1 8.8955 0.5070 -6.6021 39 1 6.5163 0.0975 -6.3011 40 1 8.6452 -1.3781 -6.2032 41 1 9.0727 -3.7998 -6.3247 42 1 8.9808 -5.1704 -4.2808 43 1 8.4691 -4.1176 -2.1147 44 1 4.4261 -0.4185 -3.2587 45 1 3.4714 -1.9436 -3.0109 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607760_2726874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:34:29 Heat of formation + Delta-G solvation = 65.863253 kcal Electronic energy + Delta-G solvation = -27697.537961 eV Core-core repulsion = 23928.514741 eV Total energy + Delta-G solvation = -3769.023220 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.142 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.14864 -40.78912 -39.74317 -38.54927 -37.45926 -37.01295 -34.24208 -33.06606 -32.59268 -29.90300 -29.45185 -27.04259 -26.61462 -25.77342 -24.60091 -23.85046 -22.81645 -21.11801 -20.63377 -19.35549 -18.90483 -18.64290 -18.39533 -17.72208 -17.49333 -17.22568 -17.10924 -16.66952 -16.10489 -15.88693 -15.40997 -15.27963 -15.19677 -14.90111 -14.41630 -14.20522 -13.97717 -13.80468 -13.66915 -13.61703 -13.50774 -13.32727 -13.28751 -13.23610 -13.16161 -13.12038 -13.06431 -12.83222 -12.28309 -12.22217 -11.97791 -11.89739 -11.62006 -11.31161 -10.66733 -10.58769 -10.30819 -10.21161 -5.03696 -0.79948 -0.44919 -0.08944 1.08299 1.13871 1.53517 1.80252 1.91184 2.19574 2.59137 2.93443 3.01049 3.16002 3.21869 3.26421 3.40544 3.50848 3.55896 3.68876 3.75777 3.80053 3.87430 3.90396 3.99581 4.11217 4.16689 4.18251 4.23135 4.25172 4.39303 4.39673 4.43917 4.54204 4.58255 4.76515 4.78580 4.79411 4.83519 4.86112 4.90837 4.96676 4.96842 5.05932 5.09660 5.14296 5.43114 5.54611 6.03663 6.88734 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.004425 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.216201 B = 6325.625265 C = 6797.696941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.369 5.369 3 H 0.439 0.561 4 C -0.059 4.059 5 C 0.007 3.993 6 C -0.123 4.123 7 H 0.133 0.867 8 C -0.157 4.157 9 C 0.094 3.906 10 H 0.088 0.912 11 N -1.082 6.082 12 S 2.704 3.296 13 O -0.955 6.955 14 O -0.987 6.987 15 C -0.668 4.668 16 C 0.012 3.988 17 C -0.113 4.113 18 O -0.542 6.542 19 Si 0.778 3.222 20 C -0.166 4.166 21 C -0.063 4.063 22 C -0.137 4.137 23 C -0.036 4.036 24 C -0.133 4.133 25 H 0.117 0.883 26 H 0.123 0.877 27 H 0.127 0.873 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.149 0.851 32 H 0.137 0.863 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.433 0.567 36 H 0.106 0.894 37 H 0.403 0.597 38 H -0.307 1.307 39 H -0.265 1.265 40 H 0.128 0.872 41 H 0.154 0.846 42 H 0.158 0.842 43 H 0.153 0.847 44 H 0.087 0.913 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.768 6.898 7.937 31.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 N 0.055 4.945 3 H 0.276 0.724 4 C -0.201 4.201 5 C -0.115 4.115 6 C -0.141 4.141 7 H 0.151 0.849 8 C -0.196 4.196 9 C -0.013 4.013 10 H 0.107 0.893 11 N -0.846 5.846 12 S 2.792 3.208 13 O -0.945 6.945 14 O -0.977 6.977 15 C -0.754 4.754 16 C 0.011 3.989 17 C -0.222 4.222 18 O -0.352 6.352 19 Si 0.682 3.318 20 C -0.184 4.184 21 C -0.081 4.081 22 C -0.156 4.156 23 C -0.055 4.055 24 C -0.173 4.173 25 H 0.136 0.864 26 H 0.141 0.859 27 H 0.145 0.855 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.143 0.857 31 H 0.167 0.833 32 H 0.155 0.845 33 H 0.136 0.864 34 H 0.104 0.896 35 H 0.273 0.727 36 H 0.123 0.877 37 H 0.254 0.746 38 H -0.235 1.235 39 H -0.191 1.191 40 H 0.145 0.855 41 H 0.171 0.829 42 H 0.176 0.824 43 H 0.171 0.829 44 H 0.106 0.894 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -29.110 5.728 7.789 30.674 hybrid contribution 0.860 -0.448 -0.633 1.158 sum -28.250 5.281 7.156 29.617 Atomic orbital electron populations 1.24110 0.75634 1.09379 1.09672 1.44828 1.15859 1.19315 1.14533 0.72401 1.24290 1.05780 1.02660 0.87385 1.23951 0.95420 1.03550 0.88561 1.23022 0.92477 1.01225 0.97411 0.84927 1.23879 0.97272 1.00577 0.97868 1.21967 0.86641 0.92690 1.00033 0.89349 1.55090 1.21419 1.17968 1.90089 1.01590 0.73268 0.73019 0.72881 1.93677 1.64378 1.50649 1.85771 1.93568 1.86788 1.59351 1.57967 1.30939 1.18565 1.04847 1.20998 1.19257 0.93114 0.94387 0.92161 1.25252 0.93516 0.90390 1.13050 1.86653 1.35070 1.27972 1.85513 0.94161 0.77116 0.88620 0.71866 1.21400 1.02719 0.96701 0.97617 1.21798 0.92724 0.93237 1.00361 1.21716 0.99770 1.02060 0.92046 1.21328 0.91769 0.92674 0.99761 1.23379 0.95663 1.01910 0.96369 0.86449 0.85886 0.85468 0.86115 0.86336 0.85685 0.83330 0.84531 0.86449 0.89570 0.72740 0.87661 0.74559 1.23546 1.19133 0.85470 0.82877 0.82398 0.82944 0.89387 0.86880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 2.98 9.19 127.69 1.17 4.16 16 2 N -0.37 24.74 0.66 -948.85 -0.62 24.12 16 3 H 0.44 -31.17 8.40 -89.69 -0.75 -31.92 16 4 C -0.06 3.67 8.57 127.69 1.09 4.77 16 5 C 0.01 -0.44 4.57 86.30 0.39 -0.05 16 6 C -0.12 6.78 3.13 -10.26 -0.03 6.75 16 7 H 0.13 -7.78 8.06 -2.39 -0.02 -7.80 16 8 C -0.16 7.36 5.69 31.12 0.18 7.53 16 9 C 0.09 -3.58 4.44 45.52 0.20 -3.37 16 10 H 0.09 -2.96 8.05 -2.39 -0.02 -2.98 16 11 N -1.08 35.51 4.47 -167.22 -0.75 34.77 16 12 S 2.70 -48.98 4.93 -56.49 -0.28 -49.26 16 13 O -0.96 10.88 15.00 -119.15 -1.79 9.09 16 14 O -0.99 11.86 16.74 -128.00 -2.14 9.72 16 15 C -0.67 10.05 5.87 22.27 0.13 10.18 16 16 C 0.01 -0.18 5.28 -19.87 -0.10 -0.28 16 17 C -0.11 2.31 1.83 71.24 0.13 2.44 16 18 O -0.54 8.49 10.45 -127.42 -1.33 7.16 16 19 Si 0.78 -16.88 30.30 68.60 2.08 -14.80 16 20 C -0.17 2.17 8.66 22.27 0.19 2.36 16 21 C -0.06 0.95 10.05 22.27 0.22 1.18 16 22 C -0.14 2.20 10.05 22.27 0.22 2.42 16 23 C -0.04 0.54 9.55 22.27 0.21 0.75 16 24 C -0.13 6.16 7.43 31.12 0.23 6.39 16 25 H 0.12 -7.41 8.14 -2.38 -0.02 -7.43 16 26 H 0.12 -7.83 8.14 -2.39 -0.02 -7.85 16 27 H 0.13 -8.25 8.11 -2.39 -0.02 -8.27 16 28 H 0.12 -7.43 8.11 -2.39 -0.02 -7.45 16 29 H 0.12 -7.12 5.13 -2.39 -0.01 -7.14 16 30 H 0.12 -7.78 8.14 -2.39 -0.02 -7.80 16 31 H 0.15 -9.67 8.09 -2.39 -0.02 -9.69 16 32 H 0.14 -8.63 7.79 -2.39 -0.02 -8.65 16 33 H 0.12 -5.77 7.90 -2.39 -0.02 -5.79 16 34 H 0.09 -3.89 7.18 -2.39 -0.02 -3.90 16 35 H 0.43 -17.10 8.45 -96.75 -0.82 -17.91 16 36 H 0.11 -3.13 5.81 -2.39 -0.01 -3.15 16 37 H 0.40 -10.35 8.86 -74.06 -0.66 -11.01 16 38 H -0.31 3.46 6.72 99.48 0.67 4.13 16 39 H -0.27 5.26 7.11 99.48 0.71 5.97 16 40 H 0.13 -1.70 4.91 -2.91 -0.01 -1.71 16 41 H 0.15 -2.96 8.06 -2.91 -0.02 -2.98 16 42 H 0.16 -3.25 8.06 -2.91 -0.02 -3.28 16 43 H 0.15 -2.57 7.34 -2.91 -0.02 -2.59 16 44 H 0.09 -3.92 8.14 -2.39 -0.02 -3.94 16 45 H 0.11 -5.32 8.10 -2.39 -0.02 -5.34 16 Total: 1.00 -90.67 359.65 -1.79 -92.46 By element: Atomic # 1 Polarization: -157.28 SS G_CDS: -1.21 Total: -158.48 kcal Atomic # 6 Polarization: 40.97 SS G_CDS: 4.25 Total: 45.22 kcal Atomic # 7 Polarization: 60.25 SS G_CDS: -1.37 Total: 58.88 kcal Atomic # 8 Polarization: 31.24 SS G_CDS: -5.26 Total: 25.98 kcal Atomic # 14 Polarization: -16.88 SS G_CDS: 2.08 Total: -14.80 kcal Atomic # 16 Polarization: -48.98 SS G_CDS: -0.28 Total: -49.26 kcal Total: -90.67 -1.79 -92.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607760_2726874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.325 kcal (2) G-P(sol) polarization free energy of solvation -90.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds