Wall clock time and date at job start Mon Mar 8 2021 11:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86308 * 1 3 3 C 1.86298 * 110.06182 * 2 1 4 4 C 1.87528 * 109.99994 * 238.63828 * 2 1 3 5 5 C 1.53939 * 106.84416 * 196.90486 * 4 2 1 6 6 C 1.52624 * 109.31299 * 57.20302 * 5 4 2 7 7 N 1.46356 * 111.88745 * 283.47452 * 6 5 4 8 8 N 1.36604 * 110.99636 * 203.19408 * 7 6 5 9 9 S 1.65597 * 120.00007 * 1.97891 * 8 7 6 10 10 O 1.42101 * 106.40052 * 192.17564 * 9 8 7 11 11 O 1.42102 * 106.40615 * 59.25163 * 9 8 7 12 12 C 1.76204 * 107.21772 * 305.71419 * 9 8 7 13 13 C 1.38234 * 119.99956 * 101.12392 * 12 9 8 14 14 C 1.38234 * 119.99703 * 180.02562 * 13 12 9 15 15 C 1.38238 * 120.00242 * 0.25514 * 14 13 12 16 16 C 1.50691 * 120.00150 * 179.72567 * 15 14 13 17 17 O 1.42909 * 109.47149 * 64.99951 * 16 15 14 18 18 Si 1.86297 * 109.47419 * 184.99947 * 16 15 14 19 19 H 1.48500 * 109.47109 * 59.99772 * 18 16 15 20 20 H 1.48498 * 109.47614 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47169 * 300.00085 * 18 16 15 22 22 C 1.38242 * 119.99563 * 359.48770 * 15 14 13 23 23 C 1.38225 * 119.99966 * 0.49297 * 22 15 14 24 24 C 1.47728 * 111.30436 * 79.02825 * 7 6 5 25 25 H 1.08996 * 109.46929 * 298.63961 * 1 2 3 26 26 H 1.08999 * 109.46784 * 58.63341 * 1 2 3 27 27 H 1.08996 * 109.46846 * 178.63358 * 1 2 3 28 28 H 1.08997 * 109.46740 * 181.36308 * 3 2 1 29 29 H 1.08998 * 109.47374 * 301.36189 * 3 2 1 30 30 H 1.09002 * 109.46921 * 61.36607 * 3 2 1 31 31 H 1.08996 * 109.97631 * 316.23443 * 4 2 1 32 32 H 1.08990 * 109.97682 * 77.47855 * 4 2 1 33 33 H 1.08999 * 109.49240 * 177.15389 * 5 4 2 34 34 H 1.08995 * 109.49372 * 297.21405 * 5 4 2 35 35 H 1.09000 * 108.99368 * 162.85775 * 6 5 4 36 36 H 1.08995 * 108.99521 * 44.09911 * 6 5 4 37 37 H 0.97000 * 120.00077 * 181.97338 * 8 7 6 38 38 H 1.07994 * 119.99957 * 359.97438 * 13 12 9 39 39 H 1.08000 * 119.99879 * 179.97438 * 14 13 12 40 40 H 1.09001 * 109.47338 * 305.00214 * 16 15 14 41 41 H 0.96696 * 113.99686 * 60.00458 * 17 16 15 42 42 H 1.08001 * 119.99260 * 180.25766 * 22 15 14 43 43 H 1.08001 * 120.00086 * 179.76997 * 23 22 15 44 44 H 1.08994 * 109.94820 * 59.05451 * 24 7 6 45 45 H 1.08996 * 109.94613 * 180.22685 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.5021 1.7499 0.0000 4 6 2.5045 -0.9171 -1.5047 5 6 3.9817 -1.2502 -1.2280 6 6 4.0831 -2.0637 0.0594 7 7 3.9263 -1.2250 1.2485 8 7 4.5043 -1.8096 2.3395 9 16 5.2947 -3.2563 2.1823 10 8 5.5249 -3.7331 3.5009 11 8 6.3365 -3.0441 1.2395 12 6 4.1692 -4.3869 1.4339 13 6 4.2703 -4.6718 0.0850 14 6 3.3871 -5.5583 -0.5022 15 6 2.3994 -6.1559 0.2584 16 6 1.4327 -7.1176 -0.3830 17 8 2.1405 -8.2736 -0.8356 18 14 0.1443 -7.6265 0.8626 19 1 -0.5912 -6.4252 1.3330 20 1 -0.8080 -8.5747 0.2308 21 1 0.8055 -8.2857 2.0175 22 6 2.3018 -5.8750 1.6084 23 6 3.1852 -4.9888 2.1956 24 6 2.5043 -0.9170 1.5043 25 1 -0.3633 0.4925 0.9019 26 1 -0.3633 0.5349 -0.8775 27 1 -0.3633 -1.0274 -0.0245 28 1 3.5918 1.7387 -0.0244 29 1 2.1244 2.2747 -0.8775 30 1 2.1642 2.2601 0.9020 31 1 1.9366 -1.8359 -1.6508 32 1 2.4231 -0.2849 -2.3888 33 1 4.3853 -1.8303 -2.0578 34 1 4.5490 -0.3257 -1.1205 35 1 5.0573 -2.5513 0.0951 36 1 3.3055 -2.8274 0.0586 37 1 4.4518 -1.3773 3.2062 38 1 5.0388 -4.2011 -0.5102 39 1 3.4657 -5.7806 -1.5561 40 1 0.9474 -6.6338 -1.2307 41 1 2.5977 -8.7551 -0.1326 42 1 1.5327 -6.3451 2.2034 43 1 3.1066 -4.7665 3.2496 44 1 1.9429 -1.8407 1.6439 45 1 2.4134 -0.2893 2.3907 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607848_13421422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:28:09 Heat of formation + Delta-G solvation = -57.256290 kcal Electronic energy + Delta-G solvation = -27875.888368 eV Core-core repulsion = 24146.050540 eV Total energy + Delta-G solvation = -3729.837828 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 344.118 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.18173 -39.96194 -38.26040 -37.87797 -36.98851 -34.97302 -33.25873 -32.40107 -30.97163 -29.50600 -28.51929 -28.02915 -27.23182 -24.78241 -24.30012 -23.18767 -22.35482 -20.43564 -19.69191 -18.88573 -18.58594 -17.89502 -17.25759 -16.73439 -16.61012 -16.26859 -15.96766 -15.81192 -15.65017 -15.32719 -15.10577 -14.67122 -14.59432 -14.35650 -14.16947 -14.03041 -13.83323 -13.66913 -13.49449 -13.31923 -13.30147 -13.19817 -13.18946 -13.06066 -12.77846 -12.68914 -12.41866 -12.34744 -12.03259 -11.92878 -11.85503 -11.67855 -10.95545 -10.84278 -10.71008 -10.50725 -10.48100 -10.25498 -9.14473 -0.88898 -0.52101 0.03070 0.90461 1.23684 1.30414 1.31659 1.63148 1.71250 1.72165 1.85677 2.12131 2.43444 2.55770 2.79293 3.17484 3.18381 3.34467 3.53756 3.62156 3.79214 3.86747 3.98422 4.16538 4.24836 4.29675 4.36718 4.43774 4.45404 4.51290 4.58574 4.59525 4.64477 4.69508 4.76318 4.78060 4.80184 4.81182 4.91561 4.96506 5.08712 5.15309 5.29960 5.35571 5.52441 5.55747 5.69731 6.29441 6.43266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.026 2.974 3 C -0.443 4.443 4 C -0.412 4.412 5 C -0.089 4.089 6 C -0.067 4.067 7 N -0.244 5.244 8 N -0.959 5.959 9 S 2.675 3.325 10 O -0.955 6.955 11 O -0.942 6.942 12 C -0.686 4.686 13 C -0.016 4.016 14 C -0.113 4.113 15 C -0.059 4.059 16 C -0.090 4.090 17 O -0.533 6.533 18 Si 0.946 3.054 19 H -0.248 1.248 20 H -0.248 1.248 21 H -0.249 1.249 22 C -0.150 4.150 23 C -0.008 4.008 24 C -0.276 4.276 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.070 0.930 37 H 0.432 0.568 38 H 0.151 0.849 39 H 0.142 0.858 40 H 0.125 0.875 41 H 0.379 0.621 42 H 0.132 0.868 43 H 0.141 0.859 44 H 0.057 0.943 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.101 1.214 -1.528 5.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.219 2.781 3 C -0.551 4.551 4 C -0.498 4.498 5 C -0.127 4.127 6 C -0.194 4.194 7 N -0.064 5.064 8 N -0.810 5.810 9 S 2.762 3.238 10 O -0.942 6.942 11 O -0.931 6.931 12 C -0.772 4.772 13 C -0.035 4.035 14 C -0.132 4.132 15 C -0.060 4.060 16 C -0.200 4.200 17 O -0.338 6.338 18 Si 0.768 3.232 19 H -0.171 1.171 20 H -0.172 1.172 21 H -0.172 1.172 22 C -0.168 4.168 23 C -0.028 4.028 24 C -0.452 4.452 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.136 0.864 36 H 0.088 0.912 37 H 0.271 0.729 38 H 0.168 0.832 39 H 0.159 0.841 40 H 0.143 0.857 41 H 0.227 0.773 42 H 0.149 0.851 43 H 0.159 0.841 44 H 0.075 0.925 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.800 1.279 -1.400 5.161 hybrid contribution -0.688 -0.945 0.609 1.318 sum -5.488 0.334 -0.791 5.555 Atomic orbital electron populations 1.26118 1.20329 1.04573 1.04855 0.79272 0.66063 0.67724 0.65003 1.26016 1.07198 1.17573 1.04323 1.26403 1.00730 1.08216 1.14500 1.21034 0.96620 1.00993 0.94068 1.24250 1.05291 0.97732 0.92157 1.63908 1.13306 1.36111 0.93025 1.55800 1.72857 1.36756 1.15554 1.03041 0.74444 0.72672 0.73605 1.93605 1.84234 1.79303 1.37089 1.93556 1.51969 1.84665 1.62910 1.31060 1.18552 1.22102 1.05524 1.21227 0.96523 0.93463 0.92334 1.21192 0.94692 0.96313 1.01027 1.20738 0.95958 0.95580 0.93702 1.25147 0.99589 0.87405 1.07863 1.86556 1.70247 1.38885 1.38083 0.85708 0.78316 0.81668 0.77513 1.17125 1.17196 1.17230 1.21203 1.00739 1.00181 0.94687 1.20788 0.90578 0.92039 0.99349 1.28254 0.92018 1.07554 1.17344 0.91031 0.90678 0.91257 0.90326 0.91235 0.91247 0.90643 0.89812 0.90292 0.89817 0.86412 0.91174 0.72870 0.83169 0.84058 0.85735 0.77350 0.85068 0.84129 0.92460 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.27 8.65 101.05 0.87 2.14 16 2 Si 1.03 -3.57 11.99 -169.99 -2.04 -5.61 16 3 C -0.44 0.97 8.65 101.05 0.87 1.85 16 4 C -0.41 1.14 5.04 37.65 0.19 1.33 16 5 C -0.09 0.14 5.74 -26.43 -0.15 -0.01 16 6 C -0.07 0.03 2.69 -4.31 -0.01 0.02 16 7 N -0.24 0.11 5.01 -56.97 -0.29 -0.17 16 8 N -0.96 0.17 6.16 60.35 0.37 0.55 16 9 S 2.67 5.15 5.31 -107.50 -0.57 4.58 16 10 O -0.95 -4.39 17.61 -57.17 -1.01 -5.39 16 11 O -0.94 -4.00 14.92 -57.17 -0.85 -4.86 16 12 C -0.69 -0.40 4.44 -39.58 -0.18 -0.58 16 13 C -0.02 0.00 6.42 -39.58 -0.25 -0.25 16 14 C -0.11 0.11 9.69 -39.58 -0.38 -0.28 16 15 C -0.06 0.06 5.35 -104.62 -0.56 -0.50 16 16 C -0.09 0.18 2.80 36.00 0.10 0.28 16 17 O -0.53 0.57 12.83 -35.23 -0.45 0.12 16 18 Si 0.95 -1.79 25.15 -169.99 -4.27 -6.06 16 19 H -0.25 0.37 7.11 56.52 0.40 0.77 16 20 H -0.25 0.08 7.11 56.52 0.40 0.48 16 21 H -0.25 0.39 7.03 56.52 0.40 0.79 16 22 C -0.15 0.12 8.67 -39.58 -0.34 -0.23 16 23 C -0.01 0.00 9.53 -39.59 -0.38 -0.38 16 24 C -0.28 0.61 4.85 60.52 0.29 0.90 16 25 H 0.07 -0.20 7.96 -51.93 -0.41 -0.61 16 26 H 0.07 -0.21 7.96 -51.93 -0.41 -0.62 16 27 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 28 H 0.08 -0.12 7.96 -51.93 -0.41 -0.53 16 29 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 30 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 31 H 0.07 -0.23 7.99 -51.93 -0.42 -0.64 16 32 H 0.08 -0.27 7.99 -51.93 -0.42 -0.68 16 33 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 34 H 0.08 -0.13 7.96 -51.93 -0.41 -0.54 16 35 H 0.12 0.05 2.49 -37.90 -0.09 -0.04 16 36 H 0.07 -0.11 4.95 -51.93 -0.26 -0.36 16 37 H 0.43 -0.91 8.95 -178.80 -1.60 -2.51 16 38 H 0.15 -0.18 6.14 -52.49 -0.32 -0.50 16 39 H 0.14 -0.32 8.06 -52.49 -0.42 -0.74 16 40 H 0.12 -0.40 7.96 -51.93 -0.41 -0.81 16 41 H 0.38 -1.52 8.70 45.56 0.40 -1.12 16 42 H 0.13 -0.30 4.87 -52.49 -0.26 -0.55 16 43 H 0.14 -0.20 7.90 -52.49 -0.41 -0.62 16 44 H 0.06 -0.14 7.92 -51.93 -0.41 -0.55 16 45 H 0.10 -0.30 7.99 -51.93 -0.42 -0.71 16 LS Contribution 358.54 15.07 5.40 5.40 Total: 0.00 -8.79 358.54 -10.79 -19.58 By element: Atomic # 1 Polarization: -5.29 SS G_CDS: -7.16 Total: -12.45 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 0.08 Total: 4.32 kcal Atomic # 7 Polarization: 0.29 SS G_CDS: 0.09 Total: 0.37 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -2.31 Total: -10.13 kcal Atomic # 14 Polarization: -5.36 SS G_CDS: -6.31 Total: -11.67 kcal Atomic # 16 Polarization: 5.15 SS G_CDS: -0.57 Total: 4.58 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -8.79 -10.79 -19.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607848_13421422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.676 kcal (2) G-P(sol) polarization free energy of solvation -8.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds