Wall clock time and date at job start Mon Mar 8 2021 11:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86308 * 1 3 3 C 1.86298 * 110.06182 * 2 1 4 4 C 1.87528 * 109.99994 * 238.63828 * 2 1 3 5 5 C 1.53939 * 106.84416 * 196.90486 * 4 2 1 6 6 C 1.52624 * 109.31299 * 57.20302 * 5 4 2 7 7 N 1.46356 * 111.88745 * 283.47452 * 6 5 4 8 8 N 1.36604 * 110.99636 * 203.19408 * 7 6 5 9 9 S 1.65597 * 120.00007 * 1.97891 * 8 7 6 10 10 O 1.42101 * 106.40052 * 192.17564 * 9 8 7 11 11 O 1.42102 * 106.40615 * 59.25163 * 9 8 7 12 12 C 1.76204 * 107.21772 * 305.71419 * 9 8 7 13 13 C 1.38234 * 119.99956 * 101.12392 * 12 9 8 14 14 C 1.38234 * 119.99703 * 180.02562 * 13 12 9 15 15 C 1.38238 * 120.00242 * 0.25514 * 14 13 12 16 16 C 1.50691 * 120.00150 * 179.72567 * 15 14 13 17 17 O 1.42909 * 109.47149 * 64.99951 * 16 15 14 18 18 Si 1.86297 * 109.47419 * 184.99947 * 16 15 14 19 19 H 1.48500 * 109.47109 * 59.99772 * 18 16 15 20 20 H 1.48498 * 109.47614 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47169 * 300.00085 * 18 16 15 22 22 C 1.38242 * 119.99563 * 359.48770 * 15 14 13 23 23 C 1.38225 * 119.99966 * 0.49297 * 22 15 14 24 24 C 1.47728 * 111.30436 * 79.02825 * 7 6 5 25 25 H 1.08996 * 109.46929 * 298.63961 * 1 2 3 26 26 H 1.08999 * 109.46784 * 58.63341 * 1 2 3 27 27 H 1.08996 * 109.46846 * 178.63358 * 1 2 3 28 28 H 1.08997 * 109.46740 * 181.36308 * 3 2 1 29 29 H 1.08998 * 109.47374 * 301.36189 * 3 2 1 30 30 H 1.09002 * 109.46921 * 61.36607 * 3 2 1 31 31 H 1.08996 * 109.97631 * 316.23443 * 4 2 1 32 32 H 1.08990 * 109.97682 * 77.47855 * 4 2 1 33 33 H 1.08999 * 109.49240 * 177.15389 * 5 4 2 34 34 H 1.08995 * 109.49372 * 297.21405 * 5 4 2 35 35 H 1.09000 * 108.99368 * 162.85775 * 6 5 4 36 36 H 1.08995 * 108.99521 * 44.09911 * 6 5 4 37 37 H 0.97000 * 120.00077 * 181.97338 * 8 7 6 38 38 H 1.07994 * 119.99957 * 359.97438 * 13 12 9 39 39 H 1.08000 * 119.99879 * 179.97438 * 14 13 12 40 40 H 1.09001 * 109.47338 * 305.00214 * 16 15 14 41 41 H 0.96696 * 113.99686 * 60.00458 * 17 16 15 42 42 H 1.08001 * 119.99260 * 180.25766 * 22 15 14 43 43 H 1.08001 * 120.00086 * 179.76997 * 23 22 15 44 44 H 1.08994 * 109.94820 * 59.05451 * 24 7 6 45 45 H 1.08996 * 109.94613 * 180.22685 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.5021 1.7499 0.0000 4 6 2.5045 -0.9171 -1.5047 5 6 3.9817 -1.2502 -1.2280 6 6 4.0831 -2.0637 0.0594 7 7 3.9263 -1.2250 1.2485 8 7 4.5043 -1.8096 2.3395 9 16 5.2947 -3.2563 2.1823 10 8 5.5249 -3.7331 3.5009 11 8 6.3365 -3.0441 1.2395 12 6 4.1692 -4.3869 1.4339 13 6 4.2703 -4.6718 0.0850 14 6 3.3871 -5.5583 -0.5022 15 6 2.3994 -6.1559 0.2584 16 6 1.4327 -7.1176 -0.3830 17 8 2.1405 -8.2736 -0.8356 18 14 0.1443 -7.6265 0.8626 19 1 -0.5912 -6.4252 1.3330 20 1 -0.8080 -8.5747 0.2308 21 1 0.8055 -8.2857 2.0175 22 6 2.3018 -5.8750 1.6084 23 6 3.1852 -4.9888 2.1956 24 6 2.5043 -0.9170 1.5043 25 1 -0.3633 0.4925 0.9019 26 1 -0.3633 0.5349 -0.8775 27 1 -0.3633 -1.0274 -0.0245 28 1 3.5918 1.7387 -0.0244 29 1 2.1244 2.2747 -0.8775 30 1 2.1642 2.2601 0.9020 31 1 1.9366 -1.8359 -1.6508 32 1 2.4231 -0.2849 -2.3888 33 1 4.3853 -1.8303 -2.0578 34 1 4.5490 -0.3257 -1.1205 35 1 5.0573 -2.5513 0.0951 36 1 3.3055 -2.8274 0.0586 37 1 4.4518 -1.3773 3.2062 38 1 5.0388 -4.2011 -0.5102 39 1 3.4657 -5.7806 -1.5561 40 1 0.9474 -6.6338 -1.2307 41 1 2.5977 -8.7551 -0.1326 42 1 1.5327 -6.3451 2.2034 43 1 3.1066 -4.7665 3.2496 44 1 1.9429 -1.8407 1.6439 45 1 2.4134 -0.2893 2.3907 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607848_13421422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:28:08 Heat of formation + Delta-G solvation = -56.988988 kcal Electronic energy + Delta-G solvation = -27875.876777 eV Core-core repulsion = 24146.050540 eV Total energy + Delta-G solvation = -3729.826237 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 344.118 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.10944 -39.91503 -38.43828 -37.75504 -37.21238 -34.86296 -33.17963 -32.32473 -30.88469 -29.28893 -28.29844 -27.88022 -27.11424 -24.65943 -24.20817 -23.11954 -22.24643 -20.48355 -19.67901 -18.88184 -18.52878 -17.92264 -17.18327 -16.71167 -16.48657 -16.16678 -15.92864 -15.79553 -15.65233 -15.21715 -14.95427 -14.57205 -14.43147 -14.22556 -14.05212 -13.86757 -13.67676 -13.60287 -13.48000 -13.43084 -13.31671 -13.12211 -13.03262 -12.94287 -12.68396 -12.64229 -12.29867 -12.22399 -11.95546 -11.82562 -11.74462 -11.61914 -10.74087 -10.69443 -10.58647 -10.40988 -10.25710 -10.18589 -9.08408 -0.96106 -0.50781 0.10095 1.07306 1.38848 1.40636 1.45352 1.83156 1.85977 1.96009 2.03019 2.18535 2.48835 2.65505 2.85522 3.13423 3.36335 3.47409 3.63389 3.72382 3.87743 3.99966 4.09108 4.24017 4.39160 4.47520 4.50042 4.57138 4.62970 4.70124 4.74625 4.83904 4.84701 4.84719 4.88925 4.89619 4.94489 4.99306 5.04702 5.13659 5.17627 5.33931 5.52585 5.60776 5.60938 5.74302 5.80866 6.50403 6.58021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.459 4.459 2 Si 1.086 2.914 3 C -0.459 4.459 4 C -0.420 4.420 5 C -0.093 4.093 6 C -0.074 4.074 7 N -0.251 5.251 8 N -0.954 5.954 9 S 2.683 3.317 10 O -0.989 6.989 11 O -0.972 6.972 12 C -0.690 4.690 13 C -0.023 4.023 14 C -0.114 4.114 15 C -0.057 4.057 16 C -0.085 4.085 17 O -0.547 6.547 18 Si 0.972 3.028 19 H -0.250 1.250 20 H -0.272 1.272 21 H -0.253 1.253 22 C -0.154 4.154 23 C -0.018 4.018 24 C -0.293 4.293 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.439 0.561 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.139 0.861 41 H 0.390 0.610 42 H 0.145 0.855 43 H 0.149 0.851 44 H 0.063 0.937 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.354 1.149 -2.169 6.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.275 2.725 3 C -0.566 4.566 4 C -0.505 4.505 5 C -0.132 4.132 6 C -0.201 4.201 7 N -0.071 5.071 8 N -0.806 5.806 9 S 2.773 3.227 10 O -0.976 6.976 11 O -0.961 6.961 12 C -0.779 4.779 13 C -0.042 4.042 14 C -0.133 4.133 15 C -0.057 4.057 16 C -0.195 4.195 17 O -0.354 6.354 18 Si 0.796 3.204 19 H -0.174 1.174 20 H -0.197 1.197 21 H -0.177 1.177 22 C -0.173 4.173 23 C -0.037 4.037 24 C -0.467 4.467 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.280 0.720 38 H 0.173 0.827 39 H 0.173 0.827 40 H 0.156 0.844 41 H 0.240 0.760 42 H 0.162 0.838 43 H 0.167 0.833 44 H 0.082 0.918 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.018 1.241 -2.003 6.463 hybrid contribution -0.352 -0.924 0.782 1.261 sum -6.370 0.316 -1.221 6.494 Atomic orbital electron populations 1.26217 1.20785 1.04761 1.04960 0.78370 0.64937 0.65726 0.63449 1.26221 1.06731 1.19218 1.04389 1.26506 0.99877 1.08845 1.15304 1.21095 0.97596 1.00773 0.93726 1.24329 1.05020 0.98237 0.92555 1.63949 1.14543 1.35707 0.92855 1.55669 1.72909 1.35810 1.16201 1.02536 0.74616 0.72999 0.72570 1.93551 1.85177 1.80155 1.38765 1.93520 1.54015 1.85239 1.63355 1.30803 1.18658 1.22431 1.05961 1.21366 0.96935 0.93781 0.92121 1.21372 0.94321 0.95821 1.01757 1.20887 0.95901 0.95347 0.93605 1.25162 0.99038 0.87034 1.08276 1.86529 1.70471 1.39214 1.39157 0.85342 0.77459 0.80644 0.76950 1.17389 1.19712 1.17712 1.21395 1.00857 0.99976 0.95063 1.20982 0.90609 0.92257 0.99892 1.28540 0.91001 1.08280 1.18851 0.90995 0.90557 0.91029 0.91221 0.91075 0.91316 0.89973 0.89178 0.89768 0.90231 0.87548 0.90146 0.71961 0.82710 0.82655 0.84378 0.76043 0.83774 0.83321 0.91836 0.87662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 3.08 8.65 113.37 0.98 4.06 16 2 Si 1.09 -8.30 11.99 68.60 0.82 -7.48 16 3 C -0.46 2.03 8.65 113.37 0.98 3.01 16 4 C -0.42 2.68 5.04 72.30 0.36 3.05 16 5 C -0.09 0.30 5.74 30.79 0.18 0.48 16 6 C -0.07 0.06 2.69 86.28 0.23 0.29 16 7 N -0.25 0.16 5.01 -334.16 -1.67 -1.51 16 8 N -0.95 -0.48 6.16 37.02 0.23 -0.25 16 9 S 2.68 14.06 5.31 -56.49 -0.30 13.76 16 10 O -0.99 -10.78 17.61 -128.00 -2.25 -13.03 16 11 O -0.97 -9.99 14.92 -128.00 -1.91 -11.90 16 12 C -0.69 -1.15 4.44 22.27 0.10 -1.05 16 13 C -0.02 0.01 6.42 22.27 0.14 0.15 16 14 C -0.11 0.31 9.69 22.27 0.22 0.52 16 15 C -0.06 0.18 5.35 -19.87 -0.11 0.07 16 16 C -0.08 0.44 2.80 71.23 0.20 0.64 16 17 O -0.55 1.71 12.83 -148.98 -1.91 -0.20 16 18 Si 0.97 -4.31 25.15 68.60 1.72 -2.58 16 19 H -0.25 1.00 7.11 99.48 0.71 1.71 16 20 H -0.27 0.13 7.11 99.48 0.71 0.84 16 21 H -0.25 0.96 7.03 99.48 0.70 1.66 16 22 C -0.15 0.35 8.67 22.27 0.19 0.54 16 23 C -0.02 0.00 9.53 22.27 0.21 0.21 16 24 C -0.29 1.41 4.85 127.53 0.62 2.03 16 25 H 0.07 -0.47 7.96 -2.39 -0.02 -0.48 16 26 H 0.08 -0.50 7.96 -2.39 -0.02 -0.52 16 27 H 0.07 -0.49 7.96 -2.39 -0.02 -0.50 16 28 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 29 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 30 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 31 H 0.08 -0.61 7.99 -2.39 -0.02 -0.63 16 32 H 0.09 -0.66 7.99 -2.39 -0.02 -0.68 16 33 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 34 H 0.08 -0.21 7.96 -2.39 -0.02 -0.23 16 35 H 0.11 0.20 2.49 -13.69 -0.03 0.17 16 36 H 0.08 -0.26 4.95 -2.39 -0.01 -0.27 16 37 H 0.44 -1.45 8.95 -219.53 -1.96 -3.41 16 38 H 0.16 -0.27 6.14 -2.91 -0.02 -0.29 16 39 H 0.16 -0.90 8.06 -2.91 -0.02 -0.92 16 40 H 0.14 -1.11 7.96 -2.39 -0.02 -1.12 16 41 H 0.39 -3.43 8.70 -74.06 -0.64 -4.07 16 42 H 0.14 -0.78 4.87 -2.91 -0.01 -0.80 16 43 H 0.15 -0.37 7.90 -2.91 -0.02 -0.40 16 44 H 0.06 -0.36 7.92 -2.39 -0.02 -0.38 16 45 H 0.10 -0.70 7.99 -2.39 -0.02 -0.72 16 Total: 0.00 -19.69 358.54 -1.83 -21.53 By element: Atomic # 1 Polarization: -11.46 SS G_CDS: -0.87 Total: -12.33 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 4.31 Total: 14.01 kcal Atomic # 7 Polarization: -0.32 SS G_CDS: -1.45 Total: -1.77 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -6.08 Total: -25.13 kcal Atomic # 14 Polarization: -12.61 SS G_CDS: 2.55 Total: -10.06 kcal Atomic # 16 Polarization: 14.06 SS G_CDS: -0.30 Total: 13.76 kcal Total: -19.69 -1.83 -21.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607848_13421422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.463 kcal (2) G-P(sol) polarization free energy of solvation -19.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds