Wall clock time and date at job start Mon Mar 8 2021 11:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86297 * 109.98548 * 2 1 4 4 C 1.87523 * 110.00097 * 121.31178 * 2 1 3 5 5 C 1.53927 * 106.84956 * 75.49981 * 4 2 1 6 6 C 1.52627 * 109.31041 * 57.20598 * 5 4 2 7 7 N 1.46359 * 111.88873 * 283.47758 * 6 5 4 8 8 N 1.36600 * 110.99808 * 203.19812 * 7 6 5 9 9 S 1.65601 * 120.00206 * 124.24339 * 8 7 6 10 10 O 1.42105 * 106.40005 * 170.85069 * 9 8 7 11 11 O 1.42097 * 106.39832 * 303.76863 * 9 8 7 12 12 C 1.76197 * 107.21808 * 57.30968 * 9 8 7 13 13 C 1.33387 * 125.20371 * 84.14454 * 12 9 8 14 14 C 1.50696 * 122.54040 * 0.02562 * 13 12 9 15 15 O 1.42901 * 109.47676 * 74.99517 * 14 13 12 16 16 Si 1.86304 * 109.47258 * 194.99754 * 14 13 12 17 17 H 1.48498 * 109.46964 * 179.97438 * 16 14 13 18 18 H 1.48498 * 109.46830 * 299.99626 * 16 14 13 19 19 H 1.48501 * 109.46976 * 60.00010 * 16 14 13 20 20 C 1.38422 * 114.92142 * 179.97438 * 13 12 9 21 21 C 1.33393 * 114.92052 * 0.02562 * 20 13 12 22 22 S 1.75884 * 125.20124 * 263.84431 * 12 9 8 23 23 C 1.47724 * 111.30651 * 79.02053 * 7 6 5 24 24 H 1.09000 * 109.46906 * 298.68912 * 1 2 3 25 25 H 1.08999 * 109.47252 * 178.69187 * 1 2 3 26 26 H 1.08999 * 109.47329 * 58.68887 * 1 2 3 27 27 H 1.08996 * 109.47471 * 59.99875 * 3 2 1 28 28 H 1.08997 * 109.47201 * 179.97438 * 3 2 1 29 29 H 1.09008 * 109.46751 * 299.99782 * 3 2 1 30 30 H 1.09002 * 109.97810 * 194.83995 * 4 2 1 31 31 H 1.09009 * 109.98006 * 316.07782 * 4 2 1 32 32 H 1.09007 * 109.50115 * 177.15264 * 5 4 2 33 33 H 1.08998 * 109.50415 * 297.21665 * 5 4 2 34 34 H 1.08998 * 108.99536 * 44.09901 * 6 5 4 35 35 H 1.09003 * 108.99802 * 162.93631 * 6 5 4 36 36 H 0.97002 * 119.99669 * 304.24413 * 8 7 6 37 37 H 1.09006 * 109.47244 * 314.99592 * 14 13 12 38 38 H 0.96697 * 114.00286 * 180.02562 * 15 14 13 39 39 H 1.07998 * 122.54254 * 179.97438 * 20 13 12 40 40 H 1.07996 * 125.20273 * 179.97438 * 21 20 13 41 41 H 1.09002 * 109.94297 * 180.31612 * 23 7 6 42 42 H 1.09001 * 109.94439 * 59.06156 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4998 1.7508 0.0000 4 6 2.5044 -0.9158 1.5055 5 6 2.3104 -2.4178 1.2302 6 6 3.0398 -2.7934 -0.0568 7 7 2.3059 -2.3594 -1.2464 8 7 2.6566 -3.1039 -2.3366 9 16 1.4931 -3.9033 -3.2025 10 8 2.1311 -4.3950 -4.3732 11 8 0.8105 -4.7406 -2.2794 12 6 0.3245 -2.6996 -3.7409 13 6 0.4463 -1.9446 -4.8338 14 6 1.6331 -2.0411 -5.7575 15 8 1.5294 -3.2296 -6.5440 16 14 1.6687 -0.5546 -6.8801 17 1 2.8386 -0.6494 -7.7898 18 1 0.4197 -0.5101 -7.6821 19 1 1.7767 0.6805 -6.0627 20 6 -0.6006 -1.0666 -5.0558 21 6 -1.5723 -1.1082 -4.1429 22 16 -1.1847 -2.3151 -2.9236 23 6 2.5043 -0.9183 -1.5034 24 1 -0.3633 0.4933 0.9015 25 1 -0.3634 -1.0274 -0.0235 26 1 -0.3634 0.5340 -0.8780 27 1 2.1411 2.2679 0.8899 28 1 3.5897 1.7410 0.0005 29 1 2.1410 2.2678 -0.8901 30 1 3.5623 -0.6975 1.6514 31 1 1.9384 -0.6217 2.3895 32 1 2.7169 -2.9953 2.0605 33 1 1.2474 -2.6337 1.1229 34 1 4.0240 -2.3249 -0.0565 35 1 3.1624 -3.8759 -0.0922 36 1 3.5872 -3.1644 -2.6036 37 1 2.5500 -2.0738 -5.1688 38 1 2.2616 -3.3571 -7.1626 39 1 -0.6281 -0.3980 -5.9035 40 1 -2.4628 -0.4974 -4.1533 41 1 1.9446 -0.6181 -2.3893 42 1 3.5647 -0.7080 -1.6433 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607848_13652106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:28:20 Heat of formation + Delta-G solvation = -74.066792 kcal Electronic energy + Delta-G solvation = -26589.279514 eV Core-core repulsion = 22947.864974 eV Total energy + Delta-G solvation = -3641.414540 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 350.075 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.86919 -39.59919 -37.90392 -36.96609 -36.64202 -34.87930 -31.39043 -30.92712 -29.48978 -28.51366 -27.96273 -27.61482 -24.66338 -24.09124 -22.06237 -21.37742 -19.98726 -19.25010 -18.67839 -18.47238 -18.15853 -17.13681 -16.71597 -16.03944 -15.95243 -15.63806 -15.17984 -15.02904 -14.79490 -14.62102 -14.44043 -14.19841 -14.12076 -13.90697 -13.69664 -13.64345 -13.37134 -13.25592 -13.18593 -13.14230 -12.87012 -12.77800 -12.56769 -12.37709 -12.29987 -12.12861 -12.11686 -12.02924 -11.53740 -11.27702 -10.96644 -10.67635 -10.45544 -10.30995 -10.26935 -9.97805 -9.49623 -0.70436 -0.38807 0.44721 0.77839 1.04226 1.25741 1.36682 1.40608 1.43734 1.68067 1.73311 1.81410 2.04134 2.44730 2.81551 3.06163 3.35691 3.78223 3.90679 3.94657 3.97606 4.03309 4.21796 4.26851 4.33728 4.47984 4.50889 4.58458 4.59618 4.61089 4.72459 4.74350 4.77707 4.81962 4.95988 4.99433 5.03901 5.13297 5.22067 5.32568 5.35871 5.56365 5.66461 6.60903 6.70069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.444 4.444 2 Si 1.016 2.984 3 C -0.449 4.449 4 C -0.409 4.409 5 C -0.103 4.103 6 C 0.024 3.976 7 N -0.263 5.263 8 N -0.969 5.969 9 S 2.734 3.266 10 O -0.927 6.927 11 O -0.943 6.943 12 C -0.762 4.762 13 C 0.043 3.957 14 C -0.084 4.084 15 O -0.518 6.518 16 Si 0.943 3.057 17 H -0.249 1.249 18 H -0.243 1.243 19 H -0.246 1.246 20 C -0.169 4.169 21 C -0.173 4.173 22 S 0.251 5.749 23 C -0.271 4.271 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.393 0.607 37 H 0.074 0.926 38 H 0.382 0.618 39 H 0.148 0.852 40 H 0.177 0.823 41 H 0.092 0.908 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.583 5.910 1.655 6.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.553 4.553 2 Si 1.210 2.790 3 C -0.557 4.557 4 C -0.495 4.495 5 C -0.141 4.141 6 C -0.104 4.104 7 N -0.082 5.082 8 N -0.817 5.817 9 S 2.819 3.181 10 O -0.916 6.916 11 O -0.933 6.933 12 C -0.964 4.964 13 C 0.025 3.975 14 C -0.197 4.197 15 O -0.324 6.324 16 Si 0.764 3.236 17 H -0.173 1.173 18 H -0.166 1.166 19 H -0.169 1.169 20 C -0.199 4.199 21 C -0.311 4.311 22 S 0.519 5.481 23 C -0.446 4.446 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.230 0.770 37 H 0.092 0.908 38 H 0.230 0.770 39 H 0.166 0.834 40 H 0.195 0.805 41 H 0.110 0.890 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.421 5.016 2.702 5.713 hybrid contribution 2.249 1.163 -1.739 3.072 sum 1.828 6.179 0.963 6.515 Atomic orbital electron populations 1.26040 1.19537 1.05309 1.04370 0.79434 0.68331 0.65983 0.65302 1.26096 1.06362 1.18447 1.04804 1.26368 1.06189 1.02742 1.14221 1.21216 1.02045 0.95669 0.95203 1.22592 0.96126 1.02151 0.89567 1.63269 1.51034 1.00030 0.93916 1.56229 1.21121 1.66243 1.38070 1.01124 0.72543 0.71904 0.72564 1.93690 1.74737 1.76382 1.46753 1.93594 1.74215 1.61995 1.63501 1.35577 1.20721 1.27754 1.12302 1.17984 0.95059 0.92535 0.91955 1.24638 0.96698 0.99695 0.98633 1.86570 1.49977 1.40484 1.55333 0.85828 0.81929 0.76134 0.79699 1.17299 1.16599 1.16946 1.20214 0.94635 1.02893 1.02169 1.26218 1.03384 1.02507 0.98992 1.84349 1.09741 1.30540 1.23436 1.28147 1.05490 0.93845 1.17071 0.91044 0.90152 0.91261 0.90699 0.91187 0.91089 0.90648 0.90046 0.90564 0.90079 0.93156 0.89416 0.76969 0.90840 0.77005 0.83417 0.80533 0.88963 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 1.02 8.65 101.05 0.87 1.89 16 2 Si 1.02 -3.37 11.99 -169.99 -2.04 -5.41 16 3 C -0.45 1.24 8.65 101.05 0.87 2.11 16 4 C -0.41 1.09 5.04 37.64 0.19 1.28 16 5 C -0.10 0.16 5.74 -26.44 -0.15 0.01 16 6 C 0.02 -0.03 5.38 -4.31 -0.02 -0.05 16 7 N -0.26 0.10 4.58 -56.96 -0.26 -0.16 16 8 N -0.97 -0.19 5.21 60.35 0.31 0.13 16 9 S 2.73 9.27 5.72 -107.50 -0.61 8.65 16 10 O -0.93 -4.59 14.62 -66.00 -0.97 -5.55 16 11 O -0.94 -5.94 17.86 -57.17 -1.02 -6.96 16 12 C -0.76 -1.95 6.56 29.04 0.19 -1.76 16 13 C 0.04 0.08 5.17 -106.25 -0.55 -0.47 16 14 C -0.08 -0.06 1.81 36.00 0.07 0.00 16 15 O -0.52 -1.10 11.02 -56.58 -0.62 -1.72 16 16 Si 0.94 -0.63 25.71 -169.99 -4.37 -5.00 16 17 H -0.25 0.15 7.11 56.52 0.40 0.55 16 18 H -0.24 -0.03 6.85 56.52 0.39 0.35 16 19 H -0.25 0.19 7.11 56.52 0.40 0.60 16 20 C -0.17 -0.08 8.74 -41.21 -0.36 -0.44 16 21 C -0.17 0.09 11.23 29.04 0.33 0.41 16 22 S 0.25 0.29 23.15 -107.50 -2.49 -2.20 16 23 C -0.27 0.56 4.86 60.52 0.29 0.85 16 24 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 25 H 0.08 -0.13 7.96 -51.93 -0.41 -0.54 16 26 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 27 H 0.07 -0.20 7.96 -51.93 -0.41 -0.61 16 28 H 0.07 -0.19 7.96 -51.93 -0.41 -0.61 16 29 H 0.07 -0.19 7.96 -51.92 -0.41 -0.60 16 30 H 0.07 -0.22 7.99 -51.93 -0.42 -0.63 16 31 H 0.08 -0.23 7.99 -51.92 -0.42 -0.65 16 32 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 33 H 0.08 -0.10 7.96 -51.93 -0.41 -0.51 16 34 H 0.05 -0.12 7.78 -51.93 -0.40 -0.52 16 35 H 0.09 -0.05 8.03 -51.93 -0.42 -0.47 16 36 H 0.39 -0.79 8.96 -178.81 -1.60 -2.39 16 37 H 0.07 -0.07 7.37 -51.93 -0.38 -0.45 16 38 H 0.38 -0.77 8.74 45.56 0.40 -0.37 16 39 H 0.15 -0.16 5.56 -52.49 -0.29 -0.45 16 40 H 0.18 -0.61 8.06 -52.49 -0.42 -1.03 16 41 H 0.09 -0.20 7.99 -51.93 -0.41 -0.62 16 42 H 0.06 -0.19 7.92 -51.93 -0.41 -0.60 16 LS Contribution 363.03 15.07 5.47 5.47 Total: 0.00 -8.46 363.03 -11.77 -20.23 By element: Atomic # 1 Polarization: -4.42 SS G_CDS: -6.91 Total: -11.32 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 1.73 Total: 3.84 kcal Atomic # 7 Polarization: -0.08 SS G_CDS: 0.05 Total: -0.03 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -2.61 Total: -14.23 kcal Atomic # 14 Polarization: -4.00 SS G_CDS: -6.41 Total: -10.41 kcal Atomic # 16 Polarization: 9.56 SS G_CDS: -3.10 Total: 6.45 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -8.46 -11.77 -20.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607848_13652106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.834 kcal (2) G-P(sol) polarization free energy of solvation -8.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds