Wall clock time and date at job start Mon Mar 8 2021 11:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86297 * 109.98548 * 2 1 4 4 C 1.87523 * 110.00097 * 121.31178 * 2 1 3 5 5 C 1.53927 * 106.84956 * 75.49981 * 4 2 1 6 6 C 1.52627 * 109.31041 * 57.20598 * 5 4 2 7 7 N 1.46359 * 111.88873 * 283.47758 * 6 5 4 8 8 N 1.36600 * 110.99808 * 203.19812 * 7 6 5 9 9 S 1.65601 * 120.00206 * 124.24339 * 8 7 6 10 10 O 1.42105 * 106.40005 * 170.85069 * 9 8 7 11 11 O 1.42097 * 106.39832 * 303.76863 * 9 8 7 12 12 C 1.76197 * 107.21808 * 57.30968 * 9 8 7 13 13 C 1.33387 * 125.20371 * 84.14454 * 12 9 8 14 14 C 1.50696 * 122.54040 * 0.02562 * 13 12 9 15 15 O 1.42901 * 109.47676 * 74.99517 * 14 13 12 16 16 Si 1.86304 * 109.47258 * 194.99754 * 14 13 12 17 17 H 1.48498 * 109.46964 * 179.97438 * 16 14 13 18 18 H 1.48498 * 109.46830 * 299.99626 * 16 14 13 19 19 H 1.48501 * 109.46976 * 60.00010 * 16 14 13 20 20 C 1.38422 * 114.92142 * 179.97438 * 13 12 9 21 21 C 1.33393 * 114.92052 * 0.02562 * 20 13 12 22 22 S 1.75884 * 125.20124 * 263.84431 * 12 9 8 23 23 C 1.47724 * 111.30651 * 79.02053 * 7 6 5 24 24 H 1.09000 * 109.46906 * 298.68912 * 1 2 3 25 25 H 1.08999 * 109.47252 * 178.69187 * 1 2 3 26 26 H 1.08999 * 109.47329 * 58.68887 * 1 2 3 27 27 H 1.08996 * 109.47471 * 59.99875 * 3 2 1 28 28 H 1.08997 * 109.47201 * 179.97438 * 3 2 1 29 29 H 1.09008 * 109.46751 * 299.99782 * 3 2 1 30 30 H 1.09002 * 109.97810 * 194.83995 * 4 2 1 31 31 H 1.09009 * 109.98006 * 316.07782 * 4 2 1 32 32 H 1.09007 * 109.50115 * 177.15264 * 5 4 2 33 33 H 1.08998 * 109.50415 * 297.21665 * 5 4 2 34 34 H 1.08998 * 108.99536 * 44.09901 * 6 5 4 35 35 H 1.09003 * 108.99802 * 162.93631 * 6 5 4 36 36 H 0.97002 * 119.99669 * 304.24413 * 8 7 6 37 37 H 1.09006 * 109.47244 * 314.99592 * 14 13 12 38 38 H 0.96697 * 114.00286 * 180.02562 * 15 14 13 39 39 H 1.07998 * 122.54254 * 179.97438 * 20 13 12 40 40 H 1.07996 * 125.20273 * 179.97438 * 21 20 13 41 41 H 1.09002 * 109.94297 * 180.31612 * 23 7 6 42 42 H 1.09001 * 109.94439 * 59.06156 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4998 1.7508 0.0000 4 6 2.5044 -0.9158 1.5055 5 6 2.3104 -2.4178 1.2302 6 6 3.0398 -2.7934 -0.0568 7 7 2.3059 -2.3594 -1.2464 8 7 2.6566 -3.1039 -2.3366 9 16 1.4931 -3.9033 -3.2025 10 8 2.1311 -4.3950 -4.3732 11 8 0.8105 -4.7406 -2.2794 12 6 0.3245 -2.6996 -3.7409 13 6 0.4463 -1.9446 -4.8338 14 6 1.6331 -2.0411 -5.7575 15 8 1.5294 -3.2296 -6.5440 16 14 1.6687 -0.5546 -6.8801 17 1 2.8386 -0.6494 -7.7898 18 1 0.4197 -0.5101 -7.6821 19 1 1.7767 0.6805 -6.0627 20 6 -0.6006 -1.0666 -5.0558 21 6 -1.5723 -1.1082 -4.1429 22 16 -1.1847 -2.3151 -2.9236 23 6 2.5043 -0.9183 -1.5034 24 1 -0.3633 0.4933 0.9015 25 1 -0.3634 -1.0274 -0.0235 26 1 -0.3634 0.5340 -0.8780 27 1 2.1411 2.2679 0.8899 28 1 3.5897 1.7410 0.0005 29 1 2.1410 2.2678 -0.8901 30 1 3.5623 -0.6975 1.6514 31 1 1.9384 -0.6217 2.3895 32 1 2.7169 -2.9953 2.0605 33 1 1.2474 -2.6337 1.1229 34 1 4.0240 -2.3249 -0.0565 35 1 3.1624 -3.8759 -0.0922 36 1 3.5872 -3.1644 -2.6036 37 1 2.5500 -2.0738 -5.1688 38 1 2.2616 -3.3571 -7.1626 39 1 -0.6281 -0.3980 -5.9035 40 1 -2.4628 -0.4974 -4.1533 41 1 1.9446 -0.6181 -2.3893 42 1 3.5647 -0.7080 -1.6433 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607848_13652106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:28:20 Heat of formation + Delta-G solvation = -72.562608 kcal Electronic energy + Delta-G solvation = -26589.214288 eV Core-core repulsion = 22947.864974 eV Total energy + Delta-G solvation = -3641.349314 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 350.075 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.90768 -39.54482 -38.20214 -37.07285 -36.92519 -34.78693 -31.42088 -30.86674 -29.26593 -28.28536 -28.01004 -27.45443 -24.55310 -24.08951 -21.97146 -21.47508 -20.09233 -19.30903 -18.75748 -18.51023 -18.26862 -17.18308 -16.68770 -16.12523 -16.04830 -15.68392 -15.06358 -14.94176 -14.78145 -14.49180 -14.43764 -14.18887 -13.92557 -13.73057 -13.68789 -13.44110 -13.35421 -13.22853 -13.14355 -13.12245 -13.05273 -12.97207 -12.55979 -12.52651 -12.34033 -12.06810 -11.97507 -11.87385 -11.54047 -11.20346 -10.74766 -10.58168 -10.37700 -10.28089 -10.22560 -9.86758 -9.56004 -0.82571 -0.51777 0.37618 0.76772 1.08422 1.24803 1.45393 1.49813 1.56263 1.86840 1.87731 1.96405 2.12266 2.62239 2.66464 3.08421 3.38531 3.67044 3.95342 3.97203 4.06378 4.16174 4.20896 4.35377 4.52187 4.61171 4.63823 4.73299 4.75073 4.84628 4.85355 4.92636 4.95494 4.96526 4.99793 5.10889 5.13722 5.17697 5.37878 5.52568 5.60860 5.76504 5.80453 6.66500 6.82740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 Si 1.069 2.931 3 C -0.456 4.456 4 C -0.416 4.416 5 C -0.106 4.106 6 C 0.020 3.980 7 N -0.275 5.275 8 N -0.961 5.961 9 S 2.743 3.257 10 O -0.950 6.950 11 O -0.982 6.982 12 C -0.781 4.781 13 C 0.040 3.960 14 C -0.103 4.103 15 O -0.542 6.542 16 Si 0.981 3.019 17 H -0.252 1.252 18 H -0.254 1.254 19 H -0.240 1.240 20 C -0.184 4.184 21 C -0.153 4.153 22 S 0.233 5.767 23 C -0.285 4.285 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.404 0.596 37 H 0.085 0.915 38 H 0.396 0.604 39 H 0.165 0.835 40 H 0.209 0.791 41 H 0.093 0.907 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.773 7.810 1.485 8.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.260 2.740 3 C -0.564 4.564 4 C -0.501 4.501 5 C -0.145 4.145 6 C -0.108 4.108 7 N -0.095 5.095 8 N -0.811 5.811 9 S 2.830 3.170 10 O -0.939 6.939 11 O -0.972 6.972 12 C -0.985 4.985 13 C 0.021 3.979 14 C -0.214 4.214 15 O -0.351 6.351 16 Si 0.801 3.199 17 H -0.175 1.175 18 H -0.178 1.178 19 H -0.163 1.163 20 C -0.214 4.214 21 C -0.291 4.291 22 S 0.500 5.500 23 C -0.458 4.458 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.243 0.757 37 H 0.102 0.898 38 H 0.246 0.754 39 H 0.182 0.818 40 H 0.226 0.774 41 H 0.112 0.888 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.196 6.881 2.534 7.336 hybrid contribution 2.169 0.594 -1.684 2.809 sum 1.973 7.475 0.851 7.778 Atomic orbital electron populations 1.26224 1.21022 1.04787 1.04666 0.78632 0.66694 0.64992 0.63721 1.26170 1.06617 1.18659 1.04919 1.26470 1.06779 1.01899 1.14981 1.21243 1.01520 0.96684 0.95023 1.22648 0.96919 1.01757 0.89507 1.63282 1.51690 1.00828 0.93689 1.55844 1.20989 1.66193 1.38118 1.00453 0.72551 0.72076 0.71961 1.93650 1.75237 1.77486 1.47548 1.93544 1.75220 1.63996 1.64441 1.35343 1.21266 1.28485 1.13373 1.18318 0.95701 0.92243 0.91622 1.25008 0.96845 1.00238 0.99306 1.86517 1.51127 1.41441 1.55978 0.85293 0.81090 0.74955 0.78595 1.17524 1.17807 1.16340 1.20444 0.94542 1.03273 1.03100 1.26597 1.03877 1.01279 0.97341 1.84406 1.09576 1.31608 1.24409 1.28400 1.06554 0.92719 1.18154 0.90749 0.91090 0.90993 0.90613 0.90914 0.90976 0.90018 0.89715 0.90382 0.90882 0.91678 0.90446 0.75694 0.89757 0.75416 0.81751 0.77398 0.88807 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.07 8.65 113.37 0.98 3.05 16 2 Si 1.07 -7.62 11.99 68.60 0.82 -6.80 16 3 C -0.46 3.01 8.65 113.37 0.98 3.99 16 4 C -0.42 2.36 5.04 72.30 0.36 2.72 16 5 C -0.11 0.28 5.74 30.78 0.18 0.46 16 6 C 0.02 -0.03 5.38 86.28 0.46 0.43 16 7 N -0.28 0.05 4.58 -334.13 -1.53 -1.48 16 8 N -0.96 -1.38 5.21 37.02 0.19 -1.19 16 9 S 2.74 23.39 5.72 -56.49 -0.32 23.07 16 10 O -0.95 -11.14 14.62 -119.56 -1.75 -12.89 16 11 O -0.98 -14.80 17.86 -128.00 -2.29 -17.08 16 12 C -0.78 -4.76 6.56 66.72 0.44 -4.32 16 13 C 0.04 0.15 5.17 -20.92 -0.11 0.05 16 14 C -0.10 -0.18 1.81 71.23 0.13 -0.05 16 15 O -0.54 -2.75 11.02 -128.57 -1.42 -4.17 16 16 Si 0.98 -2.13 25.71 68.60 1.76 -0.37 16 17 H -0.25 0.52 7.11 99.48 0.71 1.23 16 18 H -0.25 0.12 6.85 99.48 0.68 0.81 16 19 H -0.24 0.78 7.11 99.48 0.71 1.49 16 20 C -0.18 -0.04 8.74 21.22 0.19 0.15 16 21 C -0.15 0.30 11.23 66.72 0.75 1.05 16 22 S 0.23 0.69 23.15 -56.49 -1.31 -0.62 16 23 C -0.28 1.26 4.86 127.53 0.62 1.88 16 24 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 25 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 26 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 27 H 0.07 -0.49 7.96 -2.39 -0.02 -0.50 16 28 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 29 H 0.07 -0.47 7.96 -2.38 -0.02 -0.49 16 30 H 0.08 -0.55 7.99 -2.39 -0.02 -0.57 16 31 H 0.08 -0.52 7.99 -2.38 -0.02 -0.54 16 32 H 0.08 -0.26 8.14 -2.38 -0.02 -0.28 16 33 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 34 H 0.06 -0.32 7.78 -2.39 -0.02 -0.34 16 35 H 0.08 0.01 8.03 -2.39 -0.02 -0.01 16 36 H 0.40 -1.27 8.96 -219.53 -1.97 -3.24 16 37 H 0.08 -0.13 7.37 -2.38 -0.02 -0.14 16 38 H 0.40 -1.24 8.74 -74.06 -0.65 -1.89 16 39 H 0.17 -0.59 5.56 -2.91 -0.02 -0.60 16 40 H 0.21 -1.90 8.06 -2.91 -0.02 -1.92 16 41 H 0.09 -0.44 7.99 -2.39 -0.02 -0.46 16 42 H 0.07 -0.52 7.92 -2.39 -0.02 -0.54 16 Total: 0.00 -20.02 363.03 -1.70 -21.71 By element: Atomic # 1 Polarization: -8.74 SS G_CDS: -0.84 Total: -9.59 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 4.98 Total: 9.41 kcal Atomic # 7 Polarization: -1.34 SS G_CDS: -1.34 Total: -2.67 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -5.45 Total: -34.15 kcal Atomic # 14 Polarization: -9.75 SS G_CDS: 2.59 Total: -7.17 kcal Atomic # 16 Polarization: 24.08 SS G_CDS: -1.63 Total: 22.45 kcal Total: -20.02 -1.70 -21.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607848_13652106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.849 kcal (2) G-P(sol) polarization free energy of solvation -20.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds