Wall clock time and date at job start Mon Mar 8 2021 11:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86303 * 109.98233 * 2 1 4 4 C 1.87524 * 110.00372 * 121.31162 * 2 1 3 5 5 C 1.53939 * 106.84544 * 75.50451 * 4 2 1 6 6 C 1.52624 * 109.30886 * 57.20588 * 5 4 2 7 7 N 1.46361 * 111.89055 * 283.47364 * 6 5 4 8 8 N 1.36597 * 110.99596 * 203.19875 * 7 6 5 9 9 S 1.65601 * 119.99951 * 246.62423 * 8 7 6 10 10 O 1.42103 * 106.40431 * 175.41497 * 9 8 7 11 11 O 1.42104 * 106.40302 * 308.33428 * 9 8 7 12 12 C 1.76197 * 107.21528 * 61.87588 * 9 8 7 13 13 C 1.33388 * 122.54254 * 67.08855 * 12 9 8 14 14 C 1.50701 * 125.19931 * 359.97152 * 13 12 9 15 15 O 1.42902 * 109.47554 * 322.52024 * 14 13 12 16 16 Si 1.86301 * 109.47172 * 202.51413 * 14 13 12 17 17 H 1.48500 * 109.46888 * 64.82961 * 16 14 13 18 18 H 1.48495 * 109.47104 * 184.82988 * 16 14 13 19 19 H 1.48504 * 109.47127 * 304.83057 * 16 14 13 20 20 S 1.75884 * 109.59640 * 179.97438 * 13 12 9 21 21 C 1.75886 * 90.96966 * 359.97438 * 20 13 12 22 22 C 1.33391 * 109.59243 * 359.73045 * 21 20 13 23 23 C 1.47721 * 111.30545 * 79.02358 * 7 6 5 24 24 H 1.08999 * 109.47307 * 298.68248 * 1 2 3 25 25 H 1.09003 * 109.46452 * 178.68639 * 1 2 3 26 26 H 1.09004 * 109.47084 * 58.68964 * 1 2 3 27 27 H 1.09002 * 109.46749 * 55.00832 * 3 2 1 28 28 H 1.08999 * 109.47344 * 175.00555 * 3 2 1 29 29 H 1.08998 * 109.46837 * 295.00733 * 3 2 1 30 30 H 1.08996 * 109.97926 * 194.83683 * 4 2 1 31 31 H 1.09000 * 109.97600 * 316.08396 * 4 2 1 32 32 H 1.09005 * 109.49230 * 177.15392 * 5 4 2 33 33 H 1.08997 * 109.49690 * 297.21806 * 5 4 2 34 34 H 1.09004 * 109.00136 * 44.09833 * 6 5 4 35 35 H 1.09006 * 108.99332 * 162.93849 * 6 5 4 36 36 H 0.96999 * 120.00061 * 66.63622 * 8 7 6 37 37 H 1.09005 * 109.46703 * 82.51742 * 14 13 12 38 38 H 0.96698 * 113.99349 * 300.48592 * 15 14 13 39 39 H 1.07994 * 125.20280 * 180.02562 * 21 20 13 40 40 H 1.08001 * 122.53986 * 180.24607 * 22 21 20 41 41 H 1.08996 * 109.94749 * 180.31424 * 23 7 6 42 42 H 1.09003 * 109.94807 * 59.06225 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4997 1.7509 0.0000 4 6 2.5045 -0.9158 1.5055 5 6 2.3106 -2.4178 1.2301 6 6 3.0400 -2.7932 -0.0570 7 7 2.3061 -2.3593 -1.2466 8 7 2.6569 -3.1037 -2.3368 9 16 3.4662 -2.3966 -3.5967 10 8 3.7770 -3.4398 -4.5101 11 8 2.7173 -1.2443 -3.9584 12 6 5.0044 -1.8126 -2.9663 13 6 5.9643 -2.6353 -2.5410 14 6 5.8795 -4.1399 -2.5355 15 8 4.5514 -4.5410 -2.1926 16 14 7.0778 -4.8250 -1.2843 17 1 6.6677 -4.3999 0.0782 18 1 7.0792 -6.3080 -1.3607 19 1 8.4416 -4.3131 -1.5731 20 16 7.3442 -1.6956 -1.9874 21 6 6.5156 -0.1938 -2.3770 22 6 5.3111 -0.4654 -2.8817 23 6 2.5043 -0.9181 -1.5035 24 1 -0.3634 0.4932 0.9015 25 1 -0.3632 -1.0275 -0.0236 26 1 -0.3633 0.5341 -0.8780 27 1 2.0700 2.2937 0.8419 28 1 3.5860 1.7425 0.0895 29 1 2.2156 2.2407 -0.9313 30 1 3.5624 -0.6975 1.6514 31 1 1.9385 -0.6217 2.3893 32 1 2.7172 -2.9953 2.0604 33 1 1.2476 -2.6337 1.1227 34 1 4.0242 -2.3248 -0.0567 35 1 3.1626 -3.8758 -0.0924 36 1 2.4319 -4.0466 -2.3731 37 1 6.1300 -4.5215 -3.5254 38 1 4.2582 -4.2294 -1.3254 39 1 6.9219 0.7966 -2.2342 40 1 4.6255 0.3074 -3.1966 41 1 1.9447 -0.6179 -2.3893 42 1 3.5647 -0.7078 -1.6434 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607848_14772022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:28:30 Heat of formation + Delta-G solvation = -48.567847 kcal Electronic energy + Delta-G solvation = -27518.487531 eV Core-core repulsion = 23878.178708 eV Total energy + Delta-G solvation = -3640.308823 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 350.075 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.45713 -39.42328 -38.42404 -37.36597 -36.69212 -34.91542 -31.96378 -30.76114 -29.45038 -28.44135 -27.89972 -27.68016 -24.79448 -24.45128 -22.10661 -21.87467 -19.96340 -19.53529 -19.04375 -18.68006 -17.58483 -17.26914 -16.70566 -16.14835 -16.07268 -15.93276 -15.72680 -15.23380 -14.91530 -14.74117 -14.61815 -14.35855 -14.14487 -13.99438 -13.93877 -13.87390 -13.31655 -13.27705 -13.20317 -13.05623 -12.98283 -12.92018 -12.82811 -12.46151 -12.39022 -12.26526 -12.09343 -12.02818 -11.77268 -11.55738 -11.11918 -10.91393 -10.86634 -10.36363 -10.26150 -9.87158 -9.12415 -0.70845 -0.56064 0.20590 0.49010 0.78593 1.00314 1.12884 1.22252 1.44315 1.62923 1.68719 1.79485 2.04136 2.48039 2.71615 2.89158 2.93251 3.15549 3.59508 3.77480 3.94484 4.03016 4.10415 4.24941 4.31264 4.34213 4.49883 4.53010 4.61923 4.65974 4.67799 4.79134 4.80190 4.84313 4.86755 5.00223 5.02094 5.13361 5.29773 5.32380 5.43288 5.62951 5.70822 5.97021 6.61041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 1.041 2.959 3 C -0.452 4.452 4 C -0.413 4.413 5 C -0.097 4.097 6 C -0.001 4.001 7 N -0.247 5.247 8 N -0.949 5.949 9 S 2.698 3.302 10 O -0.942 6.942 11 O -0.952 6.952 12 C -0.671 4.671 13 C -0.105 4.105 14 C -0.075 4.075 15 O -0.534 6.534 16 Si 0.911 3.089 17 H -0.235 1.235 18 H -0.219 1.219 19 H -0.226 1.226 20 S 0.145 5.855 21 C -0.209 4.209 22 C -0.076 4.076 23 C -0.340 4.340 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.083 0.917 36 H 0.435 0.565 37 H 0.153 0.847 38 H 0.373 0.627 39 H 0.177 0.823 40 H 0.162 0.838 41 H 0.151 0.849 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.042 0.843 5.812 6.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.552 4.552 2 Si 1.233 2.767 3 C -0.560 4.560 4 C -0.499 4.499 5 C -0.136 4.136 6 C -0.131 4.131 7 N -0.067 5.067 8 N -0.802 5.802 9 S 2.782 3.218 10 O -0.930 6.930 11 O -0.941 6.941 12 C -0.769 4.769 13 C -0.226 4.226 14 C -0.187 4.187 15 O -0.344 6.344 16 Si 0.728 3.272 17 H -0.158 1.158 18 H -0.141 1.141 19 H -0.149 1.149 20 S 0.409 5.591 21 C -0.345 4.345 22 C -0.104 4.104 23 C -0.512 4.512 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.278 0.722 37 H 0.170 0.830 38 H 0.225 0.775 39 H 0.194 0.806 40 H 0.179 0.821 41 H 0.168 0.832 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.418 0.003 5.610 6.569 hybrid contribution -0.023 0.854 -0.145 0.867 sum 3.395 0.858 5.465 6.491 Atomic orbital electron populations 1.26023 1.19614 1.05193 1.04377 0.79028 0.68075 0.65723 0.63893 1.26120 1.06313 1.18604 1.04995 1.26401 1.06182 1.02724 1.14558 1.21145 1.01912 0.95886 0.94658 1.22984 0.96874 1.01111 0.92091 1.63441 1.49543 0.99853 0.93853 1.56002 1.71713 1.22184 1.30335 1.02439 0.72754 0.73448 0.73187 1.93589 1.84128 1.55974 1.59304 1.93535 1.68473 1.50844 1.81281 1.30159 1.24892 1.01687 1.20152 1.25091 0.97414 1.00212 0.99851 1.25020 0.93201 0.88799 1.11662 1.86691 1.28862 1.77970 1.40847 0.86081 0.78599 0.84321 0.78153 1.15784 1.14098 1.14866 1.84554 1.17361 0.97549 1.59675 1.25893 0.98622 1.01932 1.08049 1.19762 0.97214 0.94051 0.99400 1.29114 1.07154 0.92683 1.22298 0.91310 0.90330 0.90986 0.90696 0.91241 0.90731 0.90748 0.89966 0.90816 0.89921 0.93680 0.89856 0.72190 0.83016 0.77454 0.80593 0.82076 0.83156 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.69 8.65 101.05 0.87 1.56 16 2 Si 1.04 -2.93 11.99 -169.99 -2.04 -4.96 16 3 C -0.45 0.99 8.65 101.05 0.87 1.86 16 4 C -0.41 1.22 5.04 37.65 0.19 1.41 16 5 C -0.10 0.28 5.74 -26.43 -0.15 0.13 16 6 C 0.00 0.00 4.30 -4.31 -0.02 -0.02 16 7 N -0.25 0.22 5.01 -56.96 -0.29 -0.06 16 8 N -0.95 -0.03 4.03 60.35 0.24 0.21 16 9 S 2.70 7.61 4.46 -107.50 -0.48 7.13 16 10 O -0.94 -5.39 16.43 -64.83 -1.07 -6.45 16 11 O -0.95 -4.41 13.83 -57.17 -0.79 -5.20 16 12 C -0.67 -0.88 4.69 -41.21 -0.19 -1.07 16 13 C -0.10 -0.05 5.72 -36.00 -0.21 -0.25 16 14 C -0.08 0.03 2.28 36.01 0.08 0.11 16 15 O -0.53 0.29 8.17 -53.01 -0.43 -0.14 16 16 Si 0.91 -1.42 26.55 -169.99 -4.51 -5.93 16 17 H -0.24 0.44 7.11 56.52 0.40 0.84 16 18 H -0.22 0.21 7.11 56.52 0.40 0.61 16 19 H -0.23 0.35 7.03 56.52 0.40 0.74 16 20 S 0.14 -0.09 20.86 -107.50 -2.24 -2.33 16 21 C -0.21 0.19 11.23 29.04 0.33 0.52 16 22 C -0.08 -0.03 7.63 -41.21 -0.31 -0.34 16 23 C -0.34 0.18 3.01 60.52 0.18 0.36 16 24 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 25 H 0.08 -0.09 7.96 -51.93 -0.41 -0.51 16 26 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 27 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 28 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 29 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 30 H 0.07 -0.22 7.99 -51.93 -0.42 -0.64 16 31 H 0.08 -0.26 7.99 -51.93 -0.42 -0.68 16 32 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 33 H 0.08 -0.24 7.96 -51.93 -0.41 -0.66 16 34 H 0.04 -0.13 7.78 -51.93 -0.40 -0.53 16 35 H 0.08 -0.34 6.32 -51.93 -0.33 -0.67 16 36 H 0.44 -0.62 7.79 -178.81 -1.39 -2.02 16 37 H 0.15 -0.11 7.96 -51.93 -0.41 -0.53 16 38 H 0.37 -1.07 4.23 45.56 0.19 -0.88 16 39 H 0.18 -0.57 8.06 -52.49 -0.42 -1.00 16 40 H 0.16 -0.09 7.66 -52.49 -0.40 -0.49 16 41 H 0.15 0.15 5.45 -51.93 -0.28 -0.14 16 42 H 0.07 -0.08 3.62 -51.93 -0.19 -0.26 16 LS Contribution 338.26 15.07 5.10 5.10 Total: 0.00 -7.16 338.26 -11.45 -18.62 By element: Atomic # 1 Polarization: -3.65 SS G_CDS: -6.59 Total: -10.24 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 1.64 Total: 4.26 kcal Atomic # 7 Polarization: 0.19 SS G_CDS: -0.04 Total: 0.15 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -2.29 Total: -11.79 kcal Atomic # 14 Polarization: -4.35 SS G_CDS: -6.55 Total: -10.90 kcal Atomic # 16 Polarization: 7.52 SS G_CDS: -2.72 Total: 4.80 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -7.16 -11.45 -18.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607848_14772022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.952 kcal (2) G-P(sol) polarization free energy of solvation -7.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds