Wall clock time and date at job start Mon Mar 8 2021 11:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86303 * 109.98233 * 2 1 4 4 C 1.87524 * 110.00372 * 121.31162 * 2 1 3 5 5 C 1.53939 * 106.84544 * 75.50451 * 4 2 1 6 6 C 1.52624 * 109.30886 * 57.20588 * 5 4 2 7 7 N 1.46361 * 111.89055 * 283.47364 * 6 5 4 8 8 N 1.36597 * 110.99596 * 203.19875 * 7 6 5 9 9 S 1.65601 * 119.99951 * 246.62423 * 8 7 6 10 10 O 1.42103 * 106.40431 * 175.41497 * 9 8 7 11 11 O 1.42104 * 106.40302 * 308.33428 * 9 8 7 12 12 C 1.76197 * 107.21528 * 61.87588 * 9 8 7 13 13 C 1.33388 * 122.54254 * 67.08855 * 12 9 8 14 14 C 1.50701 * 125.19931 * 359.97152 * 13 12 9 15 15 O 1.42902 * 109.47554 * 322.52024 * 14 13 12 16 16 Si 1.86301 * 109.47172 * 202.51413 * 14 13 12 17 17 H 1.48500 * 109.46888 * 64.82961 * 16 14 13 18 18 H 1.48495 * 109.47104 * 184.82988 * 16 14 13 19 19 H 1.48504 * 109.47127 * 304.83057 * 16 14 13 20 20 S 1.75884 * 109.59640 * 179.97438 * 13 12 9 21 21 C 1.75886 * 90.96966 * 359.97438 * 20 13 12 22 22 C 1.33391 * 109.59243 * 359.73045 * 21 20 13 23 23 C 1.47721 * 111.30545 * 79.02358 * 7 6 5 24 24 H 1.08999 * 109.47307 * 298.68248 * 1 2 3 25 25 H 1.09003 * 109.46452 * 178.68639 * 1 2 3 26 26 H 1.09004 * 109.47084 * 58.68964 * 1 2 3 27 27 H 1.09002 * 109.46749 * 55.00832 * 3 2 1 28 28 H 1.08999 * 109.47344 * 175.00555 * 3 2 1 29 29 H 1.08998 * 109.46837 * 295.00733 * 3 2 1 30 30 H 1.08996 * 109.97926 * 194.83683 * 4 2 1 31 31 H 1.09000 * 109.97600 * 316.08396 * 4 2 1 32 32 H 1.09005 * 109.49230 * 177.15392 * 5 4 2 33 33 H 1.08997 * 109.49690 * 297.21806 * 5 4 2 34 34 H 1.09004 * 109.00136 * 44.09833 * 6 5 4 35 35 H 1.09006 * 108.99332 * 162.93849 * 6 5 4 36 36 H 0.96999 * 120.00061 * 66.63622 * 8 7 6 37 37 H 1.09005 * 109.46703 * 82.51742 * 14 13 12 38 38 H 0.96698 * 113.99349 * 300.48592 * 15 14 13 39 39 H 1.07994 * 125.20280 * 180.02562 * 21 20 13 40 40 H 1.08001 * 122.53986 * 180.24607 * 22 21 20 41 41 H 1.08996 * 109.94749 * 180.31424 * 23 7 6 42 42 H 1.09003 * 109.94807 * 59.06225 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4997 1.7509 0.0000 4 6 2.5045 -0.9158 1.5055 5 6 2.3106 -2.4178 1.2301 6 6 3.0400 -2.7932 -0.0570 7 7 2.3061 -2.3593 -1.2466 8 7 2.6569 -3.1037 -2.3368 9 16 3.4662 -2.3966 -3.5967 10 8 3.7770 -3.4398 -4.5101 11 8 2.7173 -1.2443 -3.9584 12 6 5.0044 -1.8126 -2.9663 13 6 5.9643 -2.6353 -2.5410 14 6 5.8795 -4.1399 -2.5355 15 8 4.5514 -4.5410 -2.1926 16 14 7.0778 -4.8250 -1.2843 17 1 6.6677 -4.3999 0.0782 18 1 7.0792 -6.3080 -1.3607 19 1 8.4416 -4.3131 -1.5731 20 16 7.3442 -1.6956 -1.9874 21 6 6.5156 -0.1938 -2.3770 22 6 5.3111 -0.4654 -2.8817 23 6 2.5043 -0.9181 -1.5035 24 1 -0.3634 0.4932 0.9015 25 1 -0.3632 -1.0275 -0.0236 26 1 -0.3633 0.5341 -0.8780 27 1 2.0700 2.2937 0.8419 28 1 3.5860 1.7425 0.0895 29 1 2.2156 2.2407 -0.9313 30 1 3.5624 -0.6975 1.6514 31 1 1.9385 -0.6217 2.3893 32 1 2.7172 -2.9953 2.0604 33 1 1.2476 -2.6337 1.1227 34 1 4.0242 -2.3248 -0.0567 35 1 3.1626 -3.8758 -0.0924 36 1 2.4319 -4.0466 -2.3731 37 1 6.1300 -4.5215 -3.5254 38 1 4.2582 -4.2294 -1.3254 39 1 6.9219 0.7966 -2.2342 40 1 4.6255 0.3074 -3.1966 41 1 1.9447 -0.6179 -2.3893 42 1 3.5647 -0.7078 -1.6434 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607848_14772022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:28:29 Heat of formation + Delta-G solvation = -45.219746 kcal Electronic energy + Delta-G solvation = -27518.342346 eV Core-core repulsion = 23878.178708 eV Total energy + Delta-G solvation = -3640.163638 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 350.075 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.40090 -39.41821 -38.52824 -37.42409 -36.97345 -34.75002 -31.92036 -30.70633 -29.28377 -28.28662 -27.77750 -27.60842 -24.68436 -24.41498 -21.93358 -21.87391 -20.05622 -19.49996 -19.04182 -18.71830 -17.61210 -17.24125 -16.64653 -16.24858 -16.02363 -15.84988 -15.65633 -15.25293 -14.78212 -14.62686 -14.48408 -14.30517 -14.01493 -13.91849 -13.84865 -13.71310 -13.35106 -13.27702 -13.15202 -13.08569 -12.99333 -12.86285 -12.85423 -12.43535 -12.27344 -12.22220 -11.92028 -11.84935 -11.70973 -11.53047 -11.04045 -10.80247 -10.71282 -10.23014 -10.16563 -9.82102 -9.06898 -0.79281 -0.60610 0.24289 0.54008 0.88186 1.00598 1.28187 1.35508 1.57339 1.75876 1.82046 2.00288 2.12643 2.58579 2.66635 2.91781 3.01694 3.21458 3.50663 3.99977 4.09497 4.13468 4.18927 4.34639 4.37213 4.58599 4.63072 4.73407 4.77320 4.84584 4.85910 4.86216 4.93317 4.96099 5.03797 5.05115 5.14882 5.38046 5.43395 5.55630 5.62564 5.75561 5.80549 6.15757 6.66383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 Si 1.094 2.906 3 C -0.463 4.463 4 C -0.413 4.413 5 C -0.099 4.099 6 C -0.011 4.011 7 N -0.247 5.247 8 N -0.941 5.941 9 S 2.700 3.300 10 O -0.981 6.981 11 O -0.979 6.979 12 C -0.678 4.678 13 C -0.112 4.112 14 C -0.089 4.089 15 O -0.543 6.543 16 Si 0.937 3.063 17 H -0.225 1.225 18 H -0.230 1.230 19 H -0.224 1.224 20 S 0.167 5.833 21 C -0.202 4.202 22 C -0.094 4.094 23 C -0.361 4.361 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.099 0.901 36 H 0.441 0.559 37 H 0.148 0.852 38 H 0.381 0.619 39 H 0.201 0.799 40 H 0.163 0.837 41 H 0.131 0.869 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.123 1.076 7.751 8.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.282 2.718 3 C -0.571 4.571 4 C -0.500 4.500 5 C -0.138 4.138 6 C -0.140 4.140 7 N -0.067 5.067 8 N -0.796 5.796 9 S 2.786 3.214 10 O -0.969 6.969 11 O -0.969 6.969 12 C -0.779 4.779 13 C -0.233 4.233 14 C -0.199 4.199 15 O -0.354 6.354 16 Si 0.752 3.248 17 H -0.147 1.147 18 H -0.153 1.153 19 H -0.147 1.147 20 S 0.430 5.570 21 C -0.338 4.338 22 C -0.122 4.122 23 C -0.532 4.532 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.285 0.715 37 H 0.165 0.835 38 H 0.235 0.765 39 H 0.218 0.782 40 H 0.181 0.819 41 H 0.149 0.851 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.453 0.225 7.512 8.735 hybrid contribution -0.362 0.806 -0.738 1.151 sum 4.090 1.031 6.774 7.980 Atomic orbital electron populations 1.26233 1.21450 1.04811 1.04224 0.78232 0.66138 0.64726 0.62656 1.26241 1.06833 1.19140 1.04878 1.26389 1.06705 1.02526 1.14335 1.21192 1.01958 0.96104 0.94549 1.23155 0.97138 1.02305 0.91415 1.63486 1.49696 0.99768 0.93797 1.55829 1.70973 1.22492 1.30329 1.02072 0.73097 0.72666 0.73548 1.93531 1.84844 1.57064 1.61425 1.93512 1.69472 1.51564 1.82351 1.29919 1.24385 1.02406 1.21222 1.25272 0.97743 1.00673 0.99598 1.25287 0.93724 0.88519 1.12389 1.86671 1.29092 1.78010 1.41631 0.85743 0.77888 0.83260 0.77862 1.14655 1.15278 1.14740 1.84469 1.16363 0.97211 1.58919 1.26212 0.97915 1.03016 1.06656 1.19852 0.98083 0.93742 1.00488 1.29389 1.07484 0.93249 1.23028 0.90740 0.90790 0.91913 0.90276 0.90678 0.91329 0.90069 0.89207 0.89684 0.89943 0.92991 0.88261 0.71465 0.83489 0.76474 0.78176 0.81921 0.85128 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.14 8.65 113.37 0.98 2.12 16 2 Si 1.09 -6.23 11.99 68.60 0.82 -5.41 16 3 C -0.46 2.14 8.65 113.37 0.98 3.12 16 4 C -0.41 3.04 5.04 72.30 0.36 3.40 16 5 C -0.10 0.71 5.74 30.79 0.18 0.88 16 6 C -0.01 0.07 4.30 86.28 0.37 0.44 16 7 N -0.25 0.32 5.01 -334.13 -1.67 -1.36 16 8 N -0.94 -1.20 4.03 37.02 0.15 -1.05 16 9 S 2.70 20.47 4.46 -56.49 -0.25 20.21 16 10 O -0.98 -13.61 16.43 -120.68 -1.98 -15.60 16 11 O -0.98 -11.54 13.83 -128.00 -1.77 -13.31 16 12 C -0.68 -2.35 4.69 21.22 0.10 -2.25 16 13 C -0.11 -0.12 5.72 24.59 0.14 0.02 16 14 C -0.09 0.03 2.28 71.24 0.16 0.19 16 15 O -0.54 0.24 8.17 -131.98 -1.08 -0.84 16 16 Si 0.94 -3.52 26.55 68.60 1.82 -1.70 16 17 H -0.22 1.24 7.11 99.48 0.71 1.94 16 18 H -0.23 0.48 7.11 99.48 0.71 1.18 16 19 H -0.22 0.91 7.03 99.48 0.70 1.61 16 20 S 0.17 -0.37 20.86 -56.49 -1.18 -1.55 16 21 C -0.20 0.55 11.23 66.72 0.75 1.30 16 22 C -0.09 -0.10 7.63 21.22 0.16 0.07 16 23 C -0.36 0.06 3.01 127.53 0.38 0.44 16 24 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 25 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 26 H 0.06 -0.04 7.96 -2.38 -0.02 -0.06 16 27 H 0.08 -0.42 7.96 -2.39 -0.02 -0.44 16 28 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 29 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 30 H 0.08 -0.66 7.99 -2.39 -0.02 -0.68 16 31 H 0.09 -0.74 7.99 -2.39 -0.02 -0.76 16 32 H 0.08 -0.75 8.14 -2.38 -0.02 -0.77 16 33 H 0.08 -0.57 7.96 -2.39 -0.02 -0.58 16 34 H 0.05 -0.35 7.78 -2.39 -0.02 -0.37 16 35 H 0.10 -0.91 6.32 -2.38 -0.02 -0.93 16 36 H 0.44 -0.71 7.79 -219.54 -1.71 -2.42 16 37 H 0.15 -0.01 7.96 -2.38 -0.02 -0.03 16 38 H 0.38 -2.19 4.23 -74.06 -0.31 -2.51 16 39 H 0.20 -1.67 8.06 -2.91 -0.02 -1.69 16 40 H 0.16 0.00 7.66 -2.91 -0.02 -0.02 16 41 H 0.13 0.54 5.45 -2.39 -0.01 0.53 16 42 H 0.08 -0.11 3.62 -2.39 -0.01 -0.12 16 Total: 0.00 -17.30 338.26 -0.79 -18.09 By element: Atomic # 1 Polarization: -7.01 SS G_CDS: -0.22 Total: -7.23 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 4.57 Total: 9.73 kcal Atomic # 7 Polarization: -0.88 SS G_CDS: -1.52 Total: -2.40 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -4.83 Total: -29.75 kcal Atomic # 14 Polarization: -9.75 SS G_CDS: 2.64 Total: -7.11 kcal Atomic # 16 Polarization: 20.10 SS G_CDS: -1.43 Total: 18.67 kcal Total: -17.30 -0.79 -18.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607848_14772022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.129 kcal (2) G-P(sol) polarization free energy of solvation -17.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds