Wall clock time and date at job start Mon Mar 8 2021 11:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86311 * 110.05997 * 2 1 4 4 C 1.87519 * 110.00119 * 238.64001 * 2 1 3 5 5 C 1.53930 * 106.84988 * 196.90031 * 4 2 1 6 6 C 1.52629 * 109.31191 * 57.20372 * 5 4 2 7 7 N 1.46365 * 111.88827 * 283.47847 * 6 5 4 8 8 N 1.36593 * 110.99936 * 203.19312 * 7 6 5 9 9 S 1.65601 * 120.00083 * 2.16896 * 8 7 6 10 10 O 1.42098 * 106.40189 * 192.02776 * 9 8 7 11 11 O 1.42101 * 106.40551 * 59.10387 * 9 8 7 12 12 C 1.76205 * 107.21798 * 305.56288 * 9 8 7 13 13 C 1.33386 * 122.54105 * 280.06643 * 12 9 8 14 14 S 1.75885 * 109.59612 * 179.90221 * 13 12 9 15 15 C 1.75881 * 90.96601 * 0.30120 * 14 13 12 16 16 C 1.50709 * 125.20027 * 179.79647 * 15 14 13 17 17 O 1.42891 * 109.47199 * 120.04135 * 16 15 14 18 18 Si 1.86300 * 109.47166 * 0.03723 * 16 15 14 19 19 H 1.48503 * 109.46806 * 60.00326 * 18 16 15 20 20 H 1.48495 * 109.46923 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47060 * 300.00537 * 18 16 15 22 22 C 1.33384 * 109.59927 * 359.82743 * 15 14 13 23 23 C 1.47722 * 111.30398 * 79.01883 * 7 6 5 24 24 H 1.09001 * 109.46899 * 298.63663 * 1 2 3 25 25 H 1.09001 * 109.47154 * 58.63528 * 1 2 3 26 26 H 1.09003 * 109.47355 * 178.63676 * 1 2 3 27 27 H 1.08996 * 109.46740 * 181.36658 * 3 2 1 28 28 H 1.08994 * 109.46689 * 301.36160 * 3 2 1 29 29 H 1.08997 * 109.46606 * 61.36697 * 3 2 1 30 30 H 1.09001 * 109.97806 * 316.22906 * 4 2 1 31 31 H 1.09003 * 109.98074 * 77.47332 * 4 2 1 32 32 H 1.09000 * 109.50097 * 177.15151 * 5 4 2 33 33 H 1.09001 * 109.50014 * 297.22023 * 5 4 2 34 34 H 1.08998 * 108.99555 * 162.85848 * 6 5 4 35 35 H 1.08998 * 108.99606 * 44.09691 * 6 5 4 36 36 H 0.97004 * 119.99821 * 182.16065 * 8 7 6 37 37 H 1.08008 * 125.19994 * 0.02605 * 13 12 9 38 38 H 1.09001 * 109.46710 * 240.04288 * 16 15 14 39 39 H 0.96698 * 114.00064 * 299.99826 * 17 16 15 40 40 H 1.07998 * 122.54377 * 179.97438 * 22 15 14 41 41 H 1.09007 * 109.95062 * 59.06301 * 23 7 6 42 42 H 1.09001 * 109.94901 * 180.23042 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5020 1.7501 0.0000 4 6 2.5044 -0.9170 -1.5047 5 6 3.9816 -1.2500 -1.2281 6 6 4.0831 -2.0636 0.0593 7 7 3.9263 -1.2250 1.2485 8 7 4.5043 -1.8095 2.3394 9 16 5.2989 -3.2538 2.1812 10 8 5.5317 -3.7302 3.4996 11 8 6.3393 -3.0383 1.2376 12 6 4.1762 -4.3876 1.4337 13 6 3.2238 -5.0155 2.1251 14 16 2.3034 -6.0581 1.0484 15 6 3.2988 -5.5751 -0.3188 16 6 3.1369 -6.0757 -1.7311 17 8 2.8682 -4.9731 -2.5994 18 14 1.7198 -7.2829 -1.8035 19 1 0.4705 -6.6060 -1.3720 20 1 1.5608 -7.7765 -3.1949 21 1 1.9991 -8.4287 -0.9011 22 6 4.2193 -4.6986 0.0855 23 6 2.5043 -0.9169 1.5042 24 1 -0.3633 0.4925 0.9020 25 1 -0.3633 0.5349 -0.8775 26 1 -0.3634 -1.0274 -0.0244 27 1 3.5917 1.7389 -0.0245 28 1 2.1243 2.2747 -0.8775 29 1 2.1641 2.2602 0.9020 30 1 1.9366 -1.8360 -1.6508 31 1 2.4230 -0.2848 -2.3889 32 1 4.3853 -1.8302 -2.0579 33 1 4.5490 -0.3256 -1.1205 34 1 5.0573 -2.5512 0.0949 35 1 3.3055 -2.8274 0.0586 36 1 4.4495 -1.3785 3.2067 37 1 3.0441 -4.8997 3.1838 38 1 4.0540 -6.5725 -2.0478 39 1 2.0647 -4.4835 -2.3763 40 1 4.9438 -4.2647 -0.5878 41 1 1.9429 -1.8407 1.6439 42 1 2.4134 -0.2892 2.3907 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607848_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:28:40 Heat of formation + Delta-G solvation = -51.927140 kcal Electronic energy + Delta-G solvation = -26696.130324 eV Core-core repulsion = 23055.675831 eV Total energy + Delta-G solvation = -3640.454493 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 350.075 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.60061 -39.31323 -38.23965 -37.66962 -36.96496 -34.84311 -31.95259 -30.95679 -29.53049 -28.52301 -28.24465 -27.10589 -25.08774 -24.66481 -22.29984 -21.56135 -20.05283 -19.43101 -18.95987 -18.49353 -17.94512 -17.35206 -16.72153 -16.48632 -16.10758 -15.77277 -15.76167 -15.14238 -15.07881 -14.64664 -14.59200 -14.37217 -14.11089 -14.08416 -13.87467 -13.69927 -13.48220 -13.31386 -13.28997 -13.20940 -13.17902 -13.05586 -12.98766 -12.58972 -12.53177 -12.38015 -12.23225 -11.90327 -11.66116 -11.64053 -10.94325 -10.83467 -10.76922 -10.44635 -10.33875 -9.93960 -9.11888 -0.91558 -0.60960 0.15524 0.42467 0.85104 0.91467 1.20815 1.29549 1.38511 1.65820 1.71659 1.73213 1.94089 2.45075 2.53553 2.81551 3.13248 3.28986 3.51842 3.66989 3.81799 3.92833 4.08931 4.30247 4.35116 4.41256 4.50447 4.50925 4.56302 4.58475 4.60062 4.70662 4.76195 4.77373 4.82189 4.90271 4.96977 5.05211 5.21999 5.33090 5.36425 5.57428 5.72651 6.29070 6.44698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.025 2.975 3 C -0.443 4.443 4 C -0.409 4.409 5 C -0.087 4.087 6 C -0.061 4.061 7 N -0.245 5.245 8 N -0.958 5.958 9 S 2.689 3.311 10 O -0.955 6.955 11 O -0.937 6.937 12 C -0.695 4.695 13 C -0.078 4.078 14 S 0.141 5.859 15 C -0.230 4.230 16 C -0.038 4.038 17 O -0.527 6.527 18 Si 0.891 3.109 19 H -0.234 1.234 20 H -0.223 1.223 21 H -0.233 1.233 22 C -0.040 4.040 23 C -0.276 4.276 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.070 0.930 36 H 0.431 0.569 37 H 0.184 0.816 38 H 0.131 0.869 39 H 0.376 0.624 40 H 0.166 0.834 41 H 0.055 0.945 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.751 0.846 -1.403 5.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.219 2.781 3 C -0.551 4.551 4 C -0.496 4.496 5 C -0.126 4.126 6 C -0.189 4.189 7 N -0.064 5.064 8 N -0.809 5.809 9 S 2.773 3.227 10 O -0.943 6.943 11 O -0.926 6.926 12 C -0.794 4.794 13 C -0.217 4.217 14 S 0.405 5.595 15 C -0.347 4.347 16 C -0.152 4.152 17 O -0.332 6.332 18 Si 0.711 3.289 19 H -0.157 1.157 20 H -0.145 1.145 21 H -0.156 1.156 22 C -0.069 4.069 23 C -0.451 4.451 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.136 0.864 35 H 0.088 0.912 36 H 0.271 0.729 37 H 0.201 0.799 38 H 0.149 0.851 39 H 0.224 0.776 40 H 0.183 0.817 41 H 0.074 0.926 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.984 -0.846 -1.467 6.219 hybrid contribution -0.198 0.440 0.711 0.859 sum -6.181 -0.406 -0.755 6.240 Atomic orbital electron populations 1.26123 1.20371 1.04532 1.04843 0.79286 0.65979 0.67766 0.65116 1.26020 1.07219 1.17623 1.04284 1.26384 1.00812 1.08063 1.14304 1.21023 0.96509 1.00860 0.94206 1.24162 1.05398 0.97434 0.91891 1.63908 1.13218 1.36189 0.93089 1.55834 1.72831 1.36657 1.15537 1.02785 0.74129 0.72407 0.73361 1.93600 1.84082 1.79501 1.37094 1.93558 1.51684 1.84480 1.62855 1.30181 1.20073 1.23924 1.05265 1.25779 0.95809 0.96270 1.03826 1.84546 1.32818 1.42968 0.99149 1.25051 1.02950 1.06549 1.00198 1.24375 1.10616 0.95824 0.84357 1.86573 1.48661 1.44814 1.53152 0.86324 0.77893 0.79992 0.84730 1.15715 1.14514 1.15597 1.19762 0.98445 0.96163 0.92498 1.28252 0.92084 1.07441 1.17348 0.91082 0.90673 0.91285 0.90321 0.91245 0.91305 0.90690 0.89831 0.89967 0.90019 0.86415 0.91190 0.72892 0.79897 0.85133 0.77628 0.81700 0.92619 0.88615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.39 8.65 101.05 0.87 2.26 16 2 Si 1.03 -3.79 11.99 -169.99 -2.04 -5.83 16 3 C -0.44 0.98 8.65 101.05 0.87 1.85 16 4 C -0.41 1.24 5.04 37.64 0.19 1.43 16 5 C -0.09 0.12 5.74 -26.44 -0.15 -0.03 16 6 C -0.06 0.03 2.70 -4.31 -0.01 0.02 16 7 N -0.24 0.14 5.01 -56.96 -0.29 -0.15 16 8 N -0.96 0.29 6.16 60.35 0.37 0.67 16 9 S 2.69 5.03 5.35 -107.50 -0.57 4.45 16 10 O -0.95 -4.23 17.80 -57.17 -1.02 -5.25 16 11 O -0.94 -4.17 15.15 -57.17 -0.87 -5.04 16 12 C -0.69 -0.30 4.36 -41.21 -0.18 -0.48 16 13 C -0.08 0.05 10.79 29.04 0.31 0.37 16 14 S 0.14 -0.14 20.58 -107.50 -2.21 -2.36 16 15 C -0.23 0.18 5.72 -36.00 -0.21 -0.03 16 16 C -0.04 0.07 2.96 36.01 0.11 0.17 16 17 O -0.53 0.89 12.86 -35.23 -0.45 0.43 16 18 Si 0.89 -1.44 26.25 -169.99 -4.46 -5.91 16 19 H -0.23 0.39 7.11 56.52 0.40 0.79 16 20 H -0.22 0.14 7.11 56.52 0.40 0.54 16 21 H -0.23 0.19 7.11 56.52 0.40 0.59 16 22 C -0.04 0.00 6.40 -41.21 -0.26 -0.27 16 23 C -0.28 0.67 4.84 60.52 0.29 0.96 16 24 H 0.07 -0.21 7.96 -51.93 -0.41 -0.62 16 25 H 0.07 -0.22 7.96 -51.93 -0.41 -0.64 16 26 H 0.07 -0.22 7.96 -51.93 -0.41 -0.63 16 27 H 0.08 -0.11 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 29 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 30 H 0.07 -0.28 7.99 -51.93 -0.42 -0.70 16 31 H 0.08 -0.27 7.99 -51.93 -0.42 -0.69 16 32 H 0.08 -0.12 8.14 -51.93 -0.42 -0.55 16 33 H 0.08 -0.10 7.96 -51.93 -0.41 -0.52 16 34 H 0.12 0.10 2.61 -37.81 -0.10 0.00 16 35 H 0.07 -0.11 4.92 -51.93 -0.26 -0.37 16 36 H 0.43 -0.98 8.95 -178.81 -1.60 -2.58 16 37 H 0.18 -0.48 8.06 -52.48 -0.42 -0.90 16 38 H 0.13 -0.33 7.96 -51.93 -0.41 -0.75 16 39 H 0.38 -1.80 8.70 45.56 0.40 -1.41 16 40 H 0.17 -0.03 6.60 -52.49 -0.35 -0.37 16 41 H 0.06 -0.16 7.92 -51.93 -0.41 -0.57 16 42 H 0.10 -0.31 7.99 -51.93 -0.42 -0.72 16 LS Contribution 351.90 15.07 5.30 5.30 Total: 0.00 -8.25 351.90 -10.91 -19.16 By element: Atomic # 1 Polarization: -5.24 SS G_CDS: -6.51 Total: -11.75 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 1.84 Total: 6.26 kcal Atomic # 7 Polarization: 0.43 SS G_CDS: 0.09 Total: 0.52 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -2.34 Total: -9.85 kcal Atomic # 14 Polarization: -5.23 SS G_CDS: -6.50 Total: -11.73 kcal Atomic # 16 Polarization: 4.88 SS G_CDS: -2.79 Total: 2.09 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -8.25 -10.91 -19.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607848_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.772 kcal (2) G-P(sol) polarization free energy of solvation -8.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds