Wall clock time and date at job start Mon Mar 8 2021 11:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86311 * 110.05997 * 2 1 4 4 C 1.87519 * 110.00119 * 238.64001 * 2 1 3 5 5 C 1.53930 * 106.84988 * 196.90031 * 4 2 1 6 6 C 1.52629 * 109.31191 * 57.20372 * 5 4 2 7 7 N 1.46365 * 111.88827 * 283.47847 * 6 5 4 8 8 N 1.36593 * 110.99936 * 203.19312 * 7 6 5 9 9 S 1.65601 * 120.00083 * 2.16896 * 8 7 6 10 10 O 1.42098 * 106.40189 * 192.02776 * 9 8 7 11 11 O 1.42101 * 106.40551 * 59.10387 * 9 8 7 12 12 C 1.76205 * 107.21798 * 305.56288 * 9 8 7 13 13 C 1.33386 * 122.54105 * 280.06643 * 12 9 8 14 14 S 1.75885 * 109.59612 * 179.90221 * 13 12 9 15 15 C 1.75881 * 90.96601 * 0.30120 * 14 13 12 16 16 C 1.50709 * 125.20027 * 179.79647 * 15 14 13 17 17 O 1.42891 * 109.47199 * 120.04135 * 16 15 14 18 18 Si 1.86300 * 109.47166 * 0.03723 * 16 15 14 19 19 H 1.48503 * 109.46806 * 60.00326 * 18 16 15 20 20 H 1.48495 * 109.46923 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47060 * 300.00537 * 18 16 15 22 22 C 1.33384 * 109.59927 * 359.82743 * 15 14 13 23 23 C 1.47722 * 111.30398 * 79.01883 * 7 6 5 24 24 H 1.09001 * 109.46899 * 298.63663 * 1 2 3 25 25 H 1.09001 * 109.47154 * 58.63528 * 1 2 3 26 26 H 1.09003 * 109.47355 * 178.63676 * 1 2 3 27 27 H 1.08996 * 109.46740 * 181.36658 * 3 2 1 28 28 H 1.08994 * 109.46689 * 301.36160 * 3 2 1 29 29 H 1.08997 * 109.46606 * 61.36697 * 3 2 1 30 30 H 1.09001 * 109.97806 * 316.22906 * 4 2 1 31 31 H 1.09003 * 109.98074 * 77.47332 * 4 2 1 32 32 H 1.09000 * 109.50097 * 177.15151 * 5 4 2 33 33 H 1.09001 * 109.50014 * 297.22023 * 5 4 2 34 34 H 1.08998 * 108.99555 * 162.85848 * 6 5 4 35 35 H 1.08998 * 108.99606 * 44.09691 * 6 5 4 36 36 H 0.97004 * 119.99821 * 182.16065 * 8 7 6 37 37 H 1.08008 * 125.19994 * 0.02605 * 13 12 9 38 38 H 1.09001 * 109.46710 * 240.04288 * 16 15 14 39 39 H 0.96698 * 114.00064 * 299.99826 * 17 16 15 40 40 H 1.07998 * 122.54377 * 179.97438 * 22 15 14 41 41 H 1.09007 * 109.95062 * 59.06301 * 23 7 6 42 42 H 1.09001 * 109.94901 * 180.23042 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5020 1.7501 0.0000 4 6 2.5044 -0.9170 -1.5047 5 6 3.9816 -1.2500 -1.2281 6 6 4.0831 -2.0636 0.0593 7 7 3.9263 -1.2250 1.2485 8 7 4.5043 -1.8095 2.3394 9 16 5.2989 -3.2538 2.1812 10 8 5.5317 -3.7302 3.4996 11 8 6.3393 -3.0383 1.2376 12 6 4.1762 -4.3876 1.4337 13 6 3.2238 -5.0155 2.1251 14 16 2.3034 -6.0581 1.0484 15 6 3.2988 -5.5751 -0.3188 16 6 3.1369 -6.0757 -1.7311 17 8 2.8682 -4.9731 -2.5994 18 14 1.7198 -7.2829 -1.8035 19 1 0.4705 -6.6060 -1.3720 20 1 1.5608 -7.7765 -3.1949 21 1 1.9991 -8.4287 -0.9011 22 6 4.2193 -4.6986 0.0855 23 6 2.5043 -0.9169 1.5042 24 1 -0.3633 0.4925 0.9020 25 1 -0.3633 0.5349 -0.8775 26 1 -0.3634 -1.0274 -0.0244 27 1 3.5917 1.7389 -0.0245 28 1 2.1243 2.2747 -0.8775 29 1 2.1641 2.2602 0.9020 30 1 1.9366 -1.8360 -1.6508 31 1 2.4230 -0.2848 -2.3889 32 1 4.3853 -1.8302 -2.0579 33 1 4.5490 -0.3256 -1.1205 34 1 5.0573 -2.5512 0.0949 35 1 3.3055 -2.8274 0.0586 36 1 4.4495 -1.3785 3.2067 37 1 3.0441 -4.8997 3.1838 38 1 4.0540 -6.5725 -2.0478 39 1 2.0647 -4.4835 -2.3763 40 1 4.9438 -4.2647 -0.5878 41 1 1.9429 -1.8407 1.6439 42 1 2.4134 -0.2892 2.3907 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607848_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:28:39 Heat of formation + Delta-G solvation = -51.822597 kcal Electronic energy + Delta-G solvation = -26696.125790 eV Core-core repulsion = 23055.675831 eV Total energy + Delta-G solvation = -3640.449959 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 350.075 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.55073 -39.25540 -38.41517 -37.54680 -37.18172 -34.72985 -31.87295 -30.86036 -29.30454 -28.29007 -28.10209 -26.98507 -25.03221 -24.52833 -22.20372 -21.52046 -20.08342 -19.36772 -18.94320 -18.54135 -17.83807 -17.35127 -16.68102 -16.40378 -16.05021 -15.77132 -15.69926 -15.08823 -14.91655 -14.53586 -14.45293 -14.22344 -14.02988 -13.89065 -13.70289 -13.60356 -13.48677 -13.41382 -13.29571 -13.10700 -13.04765 -12.99597 -12.89364 -12.53612 -12.41626 -12.25143 -12.11735 -11.76392 -11.61428 -11.57359 -10.71450 -10.68420 -10.61548 -10.27062 -10.20958 -9.86975 -9.04733 -0.99166 -0.57030 0.22575 0.48944 0.87355 1.04028 1.33794 1.40994 1.52976 1.83708 1.87839 1.98958 2.12392 2.44547 2.68449 2.87583 3.15685 3.42110 3.62284 3.78909 3.91325 4.05322 4.13501 4.49745 4.52574 4.53010 4.59090 4.67616 4.74968 4.82545 4.86656 4.87408 4.91061 4.95264 4.95810 5.01045 5.08925 5.20942 5.38965 5.57315 5.63661 5.75824 5.84380 6.52900 6.62759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.458 4.458 2 Si 1.088 2.912 3 C -0.461 4.461 4 C -0.417 4.417 5 C -0.091 4.091 6 C -0.067 4.067 7 N -0.252 5.252 8 N -0.952 5.952 9 S 2.698 3.302 10 O -0.987 6.987 11 O -0.970 6.970 12 C -0.700 4.700 13 C -0.079 4.079 14 S 0.160 5.840 15 C -0.228 4.228 16 C -0.036 4.036 17 O -0.537 6.537 18 Si 0.912 3.088 19 H -0.229 1.229 20 H -0.239 1.239 21 H -0.244 1.244 22 C -0.051 4.051 23 C -0.293 4.293 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.439 0.561 37 H 0.200 0.800 38 H 0.136 0.864 39 H 0.390 0.610 40 H 0.163 0.837 41 H 0.065 0.935 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.387 0.775 -1.613 7.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.566 4.566 2 Si 1.277 2.723 3 C -0.568 4.568 4 C -0.503 4.503 5 C -0.129 4.129 6 C -0.195 4.195 7 N -0.072 5.072 8 N -0.804 5.804 9 S 2.785 3.215 10 O -0.975 6.975 11 O -0.959 6.959 12 C -0.802 4.802 13 C -0.218 4.218 14 S 0.424 5.576 15 C -0.346 4.346 16 C -0.149 4.149 17 O -0.344 6.344 18 Si 0.733 3.267 19 H -0.151 1.151 20 H -0.162 1.162 21 H -0.168 1.168 22 C -0.079 4.079 23 C -0.466 4.466 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.281 0.719 37 H 0.217 0.783 38 H 0.154 0.846 39 H 0.239 0.761 40 H 0.180 0.820 41 H 0.083 0.917 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.601 -0.877 -1.648 7.827 hybrid contribution 0.258 0.478 0.740 0.918 sum -7.343 -0.400 -0.908 7.410 Atomic orbital electron populations 1.26206 1.20626 1.04882 1.04904 0.78348 0.64944 0.65523 0.63525 1.26258 1.06671 1.19569 1.04297 1.26503 0.99686 1.09002 1.15116 1.21052 0.97748 1.00419 0.93728 1.24214 1.05044 0.97927 0.92290 1.63935 1.14609 1.35727 0.92890 1.55693 1.72881 1.35657 1.16175 1.02223 0.74275 0.72734 0.72292 1.93549 1.85007 1.80327 1.38618 1.93522 1.53896 1.85101 1.63428 1.29913 1.20358 1.24365 1.05530 1.26058 0.95292 0.95701 1.04767 1.84501 1.32183 1.42328 0.98623 1.25196 1.02624 1.06007 1.00787 1.24404 1.10917 0.95790 0.83820 1.86550 1.49721 1.44923 1.53204 0.86035 0.77975 0.79348 0.83362 1.15145 1.16151 1.16802 1.19777 0.98901 0.96827 0.92423 1.28535 0.90959 1.08320 1.18808 0.91087 0.90604 0.90793 0.91371 0.91168 0.91396 0.89435 0.89336 0.90158 0.90633 0.87882 0.89946 0.71911 0.78261 0.84627 0.76060 0.82011 0.91654 0.87719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 3.48 8.65 113.37 0.98 4.46 16 2 Si 1.09 -8.93 11.99 68.60 0.82 -8.11 16 3 C -0.46 2.01 8.65 113.37 0.98 2.99 16 4 C -0.42 2.87 5.04 72.30 0.36 3.23 16 5 C -0.09 0.23 5.74 30.79 0.18 0.41 16 6 C -0.07 0.04 2.70 86.28 0.23 0.27 16 7 N -0.25 0.23 5.01 -334.12 -1.67 -1.44 16 8 N -0.95 -0.05 6.16 37.02 0.23 0.18 16 9 S 2.70 13.52 5.35 -56.49 -0.30 13.22 16 10 O -0.99 -10.10 17.80 -128.00 -2.28 -12.38 16 11 O -0.97 -10.58 15.15 -128.00 -1.94 -12.52 16 12 C -0.70 -0.84 4.36 21.22 0.09 -0.75 16 13 C -0.08 0.14 10.79 66.72 0.72 0.86 16 14 S 0.16 -0.47 20.58 -56.49 -1.16 -1.63 16 15 C -0.23 0.45 5.72 24.59 0.14 0.59 16 16 C -0.04 0.14 2.96 71.24 0.21 0.36 16 17 O -0.54 2.19 12.86 -148.98 -1.92 0.28 16 18 Si 0.91 -3.46 26.25 68.60 1.80 -1.66 16 19 H -0.23 1.08 7.11 99.48 0.71 1.78 16 20 H -0.24 0.30 7.11 99.48 0.71 1.01 16 21 H -0.24 0.48 7.11 99.48 0.71 1.19 16 22 C -0.05 -0.02 6.40 21.22 0.14 0.11 16 23 C -0.29 1.64 4.84 127.53 0.62 2.26 16 24 H 0.07 -0.51 7.96 -2.39 -0.02 -0.53 16 25 H 0.07 -0.55 7.96 -2.39 -0.02 -0.57 16 26 H 0.07 -0.60 7.96 -2.39 -0.02 -0.62 16 27 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 28 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 29 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 30 H 0.09 -0.81 7.99 -2.39 -0.02 -0.82 16 31 H 0.09 -0.66 7.99 -2.39 -0.02 -0.68 16 32 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.08 -0.12 7.96 -2.39 -0.02 -0.14 16 34 H 0.10 0.31 2.61 -13.86 -0.04 0.27 16 35 H 0.08 -0.29 4.92 -2.39 -0.01 -0.30 16 36 H 0.44 -1.72 8.95 -219.53 -1.96 -3.68 16 37 H 0.20 -1.18 8.06 -2.91 -0.02 -1.20 16 38 H 0.14 -0.71 7.96 -2.39 -0.02 -0.73 16 39 H 0.39 -4.21 8.70 -74.06 -0.64 -4.85 16 40 H 0.16 0.13 6.60 -2.91 -0.02 0.11 16 41 H 0.06 -0.46 7.92 -2.38 -0.02 -0.48 16 42 H 0.10 -0.77 7.99 -2.39 -0.02 -0.79 16 Total: 0.00 -18.79 351.90 -2.59 -21.38 By element: Atomic # 1 Polarization: -11.26 SS G_CDS: -0.83 Total: -12.08 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 4.65 Total: 14.78 kcal Atomic # 7 Polarization: 0.18 SS G_CDS: -1.45 Total: -1.26 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -6.13 Total: -24.63 kcal Atomic # 14 Polarization: -12.39 SS G_CDS: 2.62 Total: -9.77 kcal Atomic # 16 Polarization: 13.05 SS G_CDS: -1.46 Total: 11.59 kcal Total: -18.79 -2.59 -21.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607848_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.443 kcal (2) G-P(sol) polarization free energy of solvation -18.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds