Wall clock time and date at job start Mon Mar 8 2021 11:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33387 * 125.20236 * 2 1 4 4 C 1.50700 * 122.54056 * 359.97438 * 3 2 1 5 5 O 1.42899 * 109.47122 * 312.58053 * 4 3 2 6 6 Si 1.86298 * 109.46846 * 72.57951 * 4 3 2 7 7 H 1.48502 * 109.47375 * 64.88463 * 6 4 3 8 8 H 1.48503 * 109.47413 * 184.88140 * 6 4 3 9 9 H 1.48497 * 109.47411 * 304.88241 * 6 4 3 10 10 C 1.38424 * 114.91895 * 180.25218 * 3 2 1 11 11 S 1.76208 * 122.53850 * 179.72981 * 10 3 2 12 12 O 1.42102 * 106.39820 * 48.11965 * 11 10 3 13 13 O 1.42095 * 106.40040 * 181.03823 * 11 10 3 14 14 N 1.65595 * 107.21744 * 294.57869 * 11 10 3 15 15 N 1.36596 * 120.00067 * 303.39408 * 14 11 10 16 16 C 1.46354 * 111.00166 * 2.00659 * 15 14 11 17 17 C 1.52622 * 111.89035 * 203.19618 * 16 15 14 18 18 C 1.53930 * 109.31534 * 283.47601 * 17 16 15 19 19 Si 1.87519 * 106.84728 * 57.20342 * 18 17 16 20 20 C 1.86299 * 110.00178 * 196.90596 * 19 18 17 21 21 C 1.86301 * 110.00431 * 75.50409 * 19 18 17 22 22 C 1.47725 * 111.00216 * 126.35493 * 15 14 11 23 23 C 1.33389 * 114.92018 * 359.49065 * 10 3 2 24 24 C 1.50707 * 125.20119 * 180.20918 * 23 10 3 25 25 S 1.75883 * 109.59563 * 0.48194 * 23 10 3 26 26 H 1.09008 * 109.47200 * 84.33099 * 1 2 3 27 27 H 1.08998 * 109.47121 * 204.32756 * 1 2 3 28 28 H 1.08992 * 109.47215 * 324.33456 * 1 2 3 29 29 H 1.08997 * 109.47172 * 192.57717 * 4 3 2 30 30 H 0.96702 * 114.00011 * 304.58754 * 5 4 3 31 31 H 0.97004 * 120.00113 * 123.38771 * 14 11 10 32 32 H 1.09005 * 108.99388 * 323.81461 * 16 15 14 33 33 H 1.08997 * 108.99902 * 82.57505 * 16 15 14 34 34 H 1.09003 * 109.50187 * 163.52378 * 17 16 15 35 35 H 1.09003 * 109.52703 * 43.44165 * 17 16 15 36 36 H 1.08996 * 109.97326 * 297.86824 * 18 17 16 37 37 H 1.08999 * 110.05426 * 176.58380 * 18 17 16 38 38 H 1.09003 * 109.47231 * 177.27174 * 20 19 18 39 39 H 1.09005 * 109.47297 * 297.27145 * 20 19 18 40 40 H 1.09001 * 109.47512 * 57.27111 * 20 19 18 41 41 H 1.08996 * 109.47101 * 302.73136 * 21 19 18 42 42 H 1.09001 * 109.46689 * 62.72742 * 21 19 18 43 43 H 1.09004 * 109.47075 * 182.72346 * 21 19 18 44 44 H 1.08999 * 109.94646 * 294.88778 * 22 15 14 45 45 H 1.09002 * 109.95034 * 56.05340 * 22 15 14 46 46 H 1.09000 * 109.46766 * 174.58770 * 24 23 10 47 47 H 1.08997 * 109.47383 * 294.59027 * 24 23 10 48 48 H 1.09001 * 109.46826 * 54.59022 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7051 2.4846 -0.0006 5 8 0.6814 2.5800 -0.9930 6 14 0.9827 2.8606 1.6750 7 1 2.0672 2.8777 2.6892 8 1 0.3163 4.1872 1.6405 9 1 -0.0115 1.8165 2.0310 10 6 3.6379 0.8428 -0.0055 11 16 4.8356 2.1353 -0.0136 12 8 4.4453 3.0502 1.0012 13 8 6.1078 1.5031 -0.0426 14 7 4.6798 2.9390 -1.4530 15 7 4.7902 2.2570 -2.6314 16 6 4.9976 0.8280 -2.3930 17 6 5.6720 0.1452 -3.5797 18 6 4.6386 -0.0645 -4.7012 19 14 3.9416 1.6250 -5.1208 20 6 2.3530 1.4395 -6.0762 21 6 5.1791 2.5946 -6.1203 22 6 3.6125 2.4923 -3.4916 23 6 3.9750 -0.4477 0.0007 24 6 5.3861 -0.9771 0.0012 25 16 2.5209 -1.4372 0.0005 26 1 -0.3634 0.1015 -1.0227 27 1 -0.3633 -0.9364 0.4233 28 1 -0.3633 0.8348 0.5991 29 1 2.4958 3.2007 -0.2242 30 1 0.9699 2.3284 -1.8811 31 1 4.5101 3.8940 -1.4594 32 1 5.6231 0.7029 -1.5092 33 1 4.0325 0.3546 -2.2128 34 1 6.0696 -0.8202 -3.2663 35 1 6.4850 0.7716 -3.9468 36 1 3.8406 -0.7209 -4.3542 37 1 5.1210 -0.4967 -5.5779 38 1 1.9305 2.4248 -6.2735 39 1 2.5541 0.9346 -7.0211 40 1 1.6449 0.8507 -5.4932 41 1 6.1122 2.6765 -5.5629 42 1 5.3639 2.0830 -7.0649 43 1 4.7852 3.5916 -6.3181 44 1 2.7206 2.0769 -3.0227 45 1 3.4811 3.5615 -3.6580 46 1 5.3670 -2.0621 0.1039 47 1 5.8749 -0.7093 -0.9354 48 1 5.9367 -0.5427 0.8356 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607848_15065288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:28:50 Heat of formation + Delta-G solvation = -56.684038 kcal Electronic energy + Delta-G solvation = -32109.506066 eV Core-core repulsion = 28157.770061 eV Total energy + Delta-G solvation = -3951.736005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 378.106 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.86712 -39.84154 -38.43467 -37.33214 -36.99701 -35.05937 -34.13924 -31.05562 -30.94388 -29.50912 -28.52550 -28.17833 -27.87493 -25.97627 -24.77719 -23.39485 -22.39402 -20.66239 -20.26647 -19.13712 -18.96515 -18.39378 -17.84652 -17.16596 -16.80880 -16.47287 -16.17393 -15.96109 -15.40402 -15.28813 -15.05390 -14.93818 -14.53399 -14.46764 -14.28543 -14.24587 -14.20172 -13.94784 -13.71743 -13.65308 -13.52821 -13.44077 -13.33301 -13.31927 -13.20103 -13.09755 -12.90282 -12.84423 -12.69481 -12.38792 -12.09430 -11.98759 -11.78489 -11.73793 -11.63067 -11.48910 -11.07999 -10.95925 -10.82502 -10.50054 -10.07402 -9.53878 -9.17214 -0.91118 -0.51388 0.29758 0.62999 0.71526 1.21414 1.33407 1.56342 1.63209 1.70339 1.72333 1.89353 2.01103 2.42277 2.49220 2.76854 3.24555 3.36202 3.49874 3.66327 3.77637 3.87223 3.93076 3.96191 4.08403 4.27121 4.31601 4.35316 4.41189 4.47564 4.54248 4.55418 4.57959 4.58811 4.59907 4.67566 4.74725 4.79152 4.83969 4.90635 4.94138 4.97238 5.00993 5.13770 5.15533 5.28479 5.35319 5.54734 5.69310 6.34709 6.41665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.164 4.164 3 C -0.087 4.087 4 C -0.077 4.077 5 O -0.527 6.527 6 Si 1.001 2.999 7 H -0.234 1.234 8 H -0.244 1.244 9 H -0.245 1.245 10 C -0.691 4.691 11 S 2.684 3.316 12 O -0.949 6.949 13 O -0.940 6.940 14 N -0.959 5.959 15 N -0.240 5.240 16 C -0.075 4.075 17 C -0.088 4.088 18 C -0.413 4.413 19 Si 1.029 2.971 20 C -0.451 4.451 21 C -0.443 4.443 22 C -0.276 4.276 23 C -0.052 4.052 24 C -0.122 4.122 25 S 0.164 5.836 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.364 0.636 31 H 0.431 0.569 32 H 0.131 0.869 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.098 0.902 46 H 0.080 0.920 47 H 0.109 0.891 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.470 -2.680 -4.355 5.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.282 4.282 3 C -0.097 4.097 4 C -0.187 4.187 5 O -0.332 6.332 6 Si 0.818 3.182 7 H -0.156 1.156 8 H -0.167 1.167 9 H -0.169 1.169 10 C -0.790 4.790 11 S 2.770 3.230 12 O -0.937 6.937 13 O -0.929 6.929 14 N -0.809 5.809 15 N -0.060 5.060 16 C -0.202 4.202 17 C -0.127 4.127 18 C -0.499 4.499 19 Si 1.222 2.778 20 C -0.559 4.559 21 C -0.552 4.552 22 C -0.451 4.451 23 C -0.173 4.173 24 C -0.180 4.180 25 S 0.431 5.569 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.212 0.788 31 H 0.271 0.729 32 H 0.148 0.852 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.116 0.884 46 H 0.099 0.901 47 H 0.127 0.873 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.451 -3.660 -2.517 4.673 hybrid contribution -0.660 0.745 -0.889 1.335 sum -2.111 -2.915 -3.406 4.955 Atomic orbital electron populations 1.20619 0.86619 1.03690 1.04016 1.24426 1.00607 0.94626 1.08555 1.18468 0.90204 0.96886 1.04169 1.25217 0.95695 0.92449 1.05334 1.86765 1.36372 1.90469 1.19631 0.84698 0.80202 0.81135 0.72176 1.15647 1.16744 1.16894 1.29561 1.11959 1.13466 1.24022 1.02819 0.74377 0.73274 0.72578 1.93599 1.83373 1.62183 1.54571 1.93525 1.37909 1.75969 1.85490 1.55835 1.90456 1.18757 1.15887 1.63912 1.35096 1.07208 0.99740 1.24225 1.03347 0.87360 1.05268 1.21038 0.98194 1.00342 0.93122 1.26417 1.04329 1.16905 1.02285 0.79229 0.67077 0.66703 0.64806 1.26121 1.15962 1.04869 1.08929 1.26027 1.11982 1.08496 1.08685 1.28276 0.94341 1.09693 1.12813 1.24580 1.00973 0.94831 0.96959 1.21241 0.88205 1.02084 1.06519 1.84469 0.94895 1.08409 1.69110 0.89732 0.91286 0.89198 0.91384 0.78808 0.72866 0.85191 0.91809 0.90483 0.89815 0.90712 0.89868 0.90964 0.90725 0.91220 0.90346 0.91263 0.91217 0.92729 0.88395 0.90072 0.87303 0.87617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.06 8.92 36.00 0.32 0.38 16 2 C -0.16 -0.07 6.13 -36.00 -0.22 -0.30 16 3 C -0.09 -0.10 4.19 -106.25 -0.44 -0.55 16 4 C -0.08 -0.09 2.27 36.01 0.08 -0.01 16 5 O -0.53 0.14 11.21 -35.23 -0.39 -0.26 16 6 Si 1.00 2.49 26.39 -169.99 -4.49 -1.99 16 7 H -0.23 -0.92 7.11 56.52 0.40 -0.51 16 8 H -0.24 -0.67 7.11 56.52 0.40 -0.27 16 9 H -0.24 -0.41 5.73 56.52 0.32 -0.09 16 10 C -0.69 -0.96 3.81 -41.21 -0.16 -1.11 16 11 S 2.68 6.23 4.53 -107.50 -0.49 5.75 16 12 O -0.95 -4.53 16.11 -57.17 -0.92 -5.46 16 13 O -0.94 -3.30 12.58 -57.17 -0.72 -4.02 16 14 N -0.96 0.12 5.52 60.35 0.33 0.45 16 15 N -0.24 0.19 5.01 -56.97 -0.29 -0.10 16 16 C -0.07 0.05 2.41 -4.31 -0.01 0.04 16 17 C -0.09 0.15 5.69 -26.44 -0.15 0.00 16 18 C -0.41 1.18 5.04 37.64 0.19 1.37 16 19 Si 1.03 -3.90 11.99 -169.99 -2.04 -5.94 16 20 C -0.45 1.40 8.65 101.05 0.87 2.27 16 21 C -0.44 1.05 8.65 101.05 0.87 1.92 16 22 C -0.28 0.76 4.84 60.52 0.29 1.05 16 23 C -0.05 -0.02 4.86 -36.00 -0.18 -0.19 16 24 C -0.12 0.09 8.41 36.01 0.30 0.39 16 25 S 0.16 -0.06 23.31 -107.50 -2.51 -2.57 16 26 H 0.08 -0.15 8.14 -51.92 -0.42 -0.57 16 27 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 28 H 0.09 0.01 4.40 -51.93 -0.23 -0.22 16 29 H 0.07 0.03 5.23 -51.93 -0.27 -0.24 16 30 H 0.36 -1.12 7.91 45.56 0.36 -0.76 16 31 H 0.43 -0.88 8.95 -178.81 -1.60 -2.48 16 32 H 0.13 0.04 1.49 -38.75 -0.06 -0.02 16 33 H 0.06 -0.08 5.47 -51.93 -0.28 -0.37 16 34 H 0.08 -0.19 7.96 -51.93 -0.41 -0.60 16 35 H 0.08 -0.15 7.96 -51.93 -0.41 -0.56 16 36 H 0.07 -0.22 7.99 -51.93 -0.42 -0.63 16 37 H 0.08 -0.27 7.99 -51.93 -0.42 -0.68 16 38 H 0.07 -0.22 7.96 -51.93 -0.41 -0.63 16 39 H 0.07 -0.21 7.96 -51.93 -0.41 -0.63 16 40 H 0.07 -0.22 7.96 -51.93 -0.41 -0.63 16 41 H 0.08 -0.13 7.96 -51.93 -0.41 -0.54 16 42 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 43 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 44 H 0.05 -0.19 6.81 -51.93 -0.35 -0.54 16 45 H 0.10 -0.35 7.99 -51.93 -0.42 -0.77 16 46 H 0.08 -0.21 8.14 -51.93 -0.42 -0.64 16 47 H 0.11 -0.14 4.85 -51.93 -0.25 -0.39 16 48 H 0.11 -0.01 7.10 -51.93 -0.37 -0.38 16 LS Contribution 374.82 15.07 5.65 5.65 Total: 0.00 -6.21 374.82 -11.83 -18.04 By element: Atomic # 1 Polarization: -7.07 SS G_CDS: -7.75 Total: -14.82 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 1.78 Total: 5.27 kcal Atomic # 7 Polarization: 0.31 SS G_CDS: 0.05 Total: 0.36 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -2.04 Total: -9.73 kcal Atomic # 14 Polarization: -1.41 SS G_CDS: -6.52 Total: -7.94 kcal Atomic # 16 Polarization: 6.17 SS G_CDS: -2.99 Total: 3.18 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -6.21 -11.83 -18.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607848_15065288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.642 kcal (2) G-P(sol) polarization free energy of solvation -6.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds