Wall clock time and date at job start Mon Mar 8 2021 11:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33387 * 125.20236 * 2 1 4 4 C 1.50700 * 122.54056 * 359.97438 * 3 2 1 5 5 O 1.42899 * 109.47122 * 312.58053 * 4 3 2 6 6 Si 1.86298 * 109.46846 * 72.57951 * 4 3 2 7 7 H 1.48502 * 109.47375 * 64.88463 * 6 4 3 8 8 H 1.48503 * 109.47413 * 184.88140 * 6 4 3 9 9 H 1.48497 * 109.47411 * 304.88241 * 6 4 3 10 10 C 1.38424 * 114.91895 * 180.25218 * 3 2 1 11 11 S 1.76208 * 122.53850 * 179.72981 * 10 3 2 12 12 O 1.42102 * 106.39820 * 48.11965 * 11 10 3 13 13 O 1.42095 * 106.40040 * 181.03823 * 11 10 3 14 14 N 1.65595 * 107.21744 * 294.57869 * 11 10 3 15 15 N 1.36596 * 120.00067 * 303.39408 * 14 11 10 16 16 C 1.46354 * 111.00166 * 2.00659 * 15 14 11 17 17 C 1.52622 * 111.89035 * 203.19618 * 16 15 14 18 18 C 1.53930 * 109.31534 * 283.47601 * 17 16 15 19 19 Si 1.87519 * 106.84728 * 57.20342 * 18 17 16 20 20 C 1.86299 * 110.00178 * 196.90596 * 19 18 17 21 21 C 1.86301 * 110.00431 * 75.50409 * 19 18 17 22 22 C 1.47725 * 111.00216 * 126.35493 * 15 14 11 23 23 C 1.33389 * 114.92018 * 359.49065 * 10 3 2 24 24 C 1.50707 * 125.20119 * 180.20918 * 23 10 3 25 25 S 1.75883 * 109.59563 * 0.48194 * 23 10 3 26 26 H 1.09008 * 109.47200 * 84.33099 * 1 2 3 27 27 H 1.08998 * 109.47121 * 204.32756 * 1 2 3 28 28 H 1.08992 * 109.47215 * 324.33456 * 1 2 3 29 29 H 1.08997 * 109.47172 * 192.57717 * 4 3 2 30 30 H 0.96702 * 114.00011 * 304.58754 * 5 4 3 31 31 H 0.97004 * 120.00113 * 123.38771 * 14 11 10 32 32 H 1.09005 * 108.99388 * 323.81461 * 16 15 14 33 33 H 1.08997 * 108.99902 * 82.57505 * 16 15 14 34 34 H 1.09003 * 109.50187 * 163.52378 * 17 16 15 35 35 H 1.09003 * 109.52703 * 43.44165 * 17 16 15 36 36 H 1.08996 * 109.97326 * 297.86824 * 18 17 16 37 37 H 1.08999 * 110.05426 * 176.58380 * 18 17 16 38 38 H 1.09003 * 109.47231 * 177.27174 * 20 19 18 39 39 H 1.09005 * 109.47297 * 297.27145 * 20 19 18 40 40 H 1.09001 * 109.47512 * 57.27111 * 20 19 18 41 41 H 1.08996 * 109.47101 * 302.73136 * 21 19 18 42 42 H 1.09001 * 109.46689 * 62.72742 * 21 19 18 43 43 H 1.09004 * 109.47075 * 182.72346 * 21 19 18 44 44 H 1.08999 * 109.94646 * 294.88778 * 22 15 14 45 45 H 1.09002 * 109.95034 * 56.05340 * 22 15 14 46 46 H 1.09000 * 109.46766 * 174.58770 * 24 23 10 47 47 H 1.08997 * 109.47383 * 294.59027 * 24 23 10 48 48 H 1.09001 * 109.46826 * 54.59022 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7051 2.4846 -0.0006 5 8 0.6814 2.5800 -0.9930 6 14 0.9827 2.8606 1.6750 7 1 2.0672 2.8777 2.6892 8 1 0.3163 4.1872 1.6405 9 1 -0.0115 1.8165 2.0310 10 6 3.6379 0.8428 -0.0055 11 16 4.8356 2.1353 -0.0136 12 8 4.4453 3.0502 1.0012 13 8 6.1078 1.5031 -0.0426 14 7 4.6798 2.9390 -1.4530 15 7 4.7902 2.2570 -2.6314 16 6 4.9976 0.8280 -2.3930 17 6 5.6720 0.1452 -3.5797 18 6 4.6386 -0.0645 -4.7012 19 14 3.9416 1.6250 -5.1208 20 6 2.3530 1.4395 -6.0762 21 6 5.1791 2.5946 -6.1203 22 6 3.6125 2.4923 -3.4916 23 6 3.9750 -0.4477 0.0007 24 6 5.3861 -0.9771 0.0012 25 16 2.5209 -1.4372 0.0005 26 1 -0.3634 0.1015 -1.0227 27 1 -0.3633 -0.9364 0.4233 28 1 -0.3633 0.8348 0.5991 29 1 2.4958 3.2007 -0.2242 30 1 0.9699 2.3284 -1.8811 31 1 4.5101 3.8940 -1.4594 32 1 5.6231 0.7029 -1.5092 33 1 4.0325 0.3546 -2.2128 34 1 6.0696 -0.8202 -3.2663 35 1 6.4850 0.7716 -3.9468 36 1 3.8406 -0.7209 -4.3542 37 1 5.1210 -0.4967 -5.5779 38 1 1.9305 2.4248 -6.2735 39 1 2.5541 0.9346 -7.0211 40 1 1.6449 0.8507 -5.4932 41 1 6.1122 2.6765 -5.5629 42 1 5.3639 2.0830 -7.0649 43 1 4.7852 3.5916 -6.3181 44 1 2.7206 2.0769 -3.0227 45 1 3.4811 3.5615 -3.6580 46 1 5.3670 -2.0621 0.1039 47 1 5.8749 -0.7093 -0.9354 48 1 5.9367 -0.5427 0.8356 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607848_15065288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:28:49 Heat of formation + Delta-G solvation = -52.973816 kcal Electronic energy + Delta-G solvation = -32109.345179 eV Core-core repulsion = 28157.770061 eV Total energy + Delta-G solvation = -3951.575118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 378.106 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.84246 -39.83335 -38.53855 -37.39154 -37.14546 -34.95341 -34.07383 -30.97205 -30.86003 -29.26625 -28.28065 -28.17349 -27.69891 -25.95583 -24.62190 -23.39258 -22.27506 -20.70106 -20.29361 -19.13835 -18.95725 -18.40247 -17.82480 -17.22570 -16.84637 -16.47643 -16.15554 -16.00026 -15.41111 -15.25580 -15.02853 -14.84692 -14.43467 -14.35136 -14.18702 -14.15172 -14.01928 -13.76372 -13.71596 -13.63522 -13.45101 -13.40796 -13.30741 -13.11854 -13.03814 -13.00146 -12.93080 -12.81423 -12.69795 -12.34182 -12.24847 -11.89403 -11.83459 -11.77736 -11.59591 -11.46431 -11.08430 -10.71883 -10.63792 -10.25055 -10.04736 -9.52779 -9.08735 -0.99870 -0.52267 0.31892 0.62739 0.65278 1.09658 1.34952 1.43418 1.52879 1.81510 1.86477 1.97695 2.09196 2.39484 2.66908 2.85036 3.16944 3.36888 3.53071 3.69272 3.87384 3.93897 3.97215 4.02539 4.13659 4.42152 4.42797 4.51333 4.57484 4.63938 4.66589 4.67443 4.72248 4.85969 4.86487 4.87885 4.90555 4.95375 4.99770 5.02566 5.03909 5.09210 5.14457 5.19904 5.34692 5.52600 5.63608 5.75206 5.82892 6.50740 6.53674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.169 4.169 3 C -0.097 4.097 4 C -0.070 4.070 5 O -0.528 6.528 6 Si 0.993 3.007 7 H -0.263 1.263 8 H -0.251 1.251 9 H -0.232 1.232 10 C -0.698 4.698 11 S 2.684 3.316 12 O -0.984 6.984 13 O -0.959 6.959 14 N -0.952 5.952 15 N -0.245 5.245 16 C -0.081 4.081 17 C -0.093 4.093 18 C -0.423 4.423 19 Si 1.092 2.908 20 C -0.459 4.459 21 C -0.461 4.461 22 C -0.293 4.293 23 C -0.057 4.057 24 C -0.129 4.129 25 S 0.195 5.805 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.379 0.621 31 H 0.438 0.562 32 H 0.121 0.879 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.108 0.892 46 H 0.100 0.900 47 H 0.114 0.886 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.476 -3.816 -5.759 7.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.287 4.287 3 C -0.107 4.107 4 C -0.181 4.181 5 O -0.335 6.335 6 Si 0.813 3.187 7 H -0.188 1.188 8 H -0.174 1.174 9 H -0.155 1.155 10 C -0.799 4.799 11 S 2.771 3.229 12 O -0.971 6.971 13 O -0.948 6.948 14 N -0.805 5.805 15 N -0.064 5.064 16 C -0.209 4.209 17 C -0.132 4.132 18 C -0.508 4.508 19 Si 1.281 2.719 20 C -0.567 4.567 21 C -0.568 4.568 22 C -0.467 4.467 23 C -0.178 4.178 24 C -0.186 4.186 25 S 0.462 5.538 26 H 0.117 0.883 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.229 0.771 31 H 0.280 0.720 32 H 0.138 0.862 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.126 0.874 46 H 0.119 0.881 47 H 0.132 0.868 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.451 -4.769 -3.919 6.642 hybrid contribution -0.342 1.074 -0.493 1.230 sum -2.793 -3.695 -4.412 6.398 Atomic orbital electron populations 1.20689 0.85843 1.03805 1.04863 1.24641 1.01293 0.94875 1.07938 1.18457 0.90176 0.97013 1.05044 1.24910 0.95671 0.92842 1.04676 1.86723 1.35926 1.90539 1.20341 0.84760 0.79587 0.81297 0.73047 1.18771 1.17447 1.15485 1.29393 1.11779 1.13473 1.25230 1.02602 0.74344 0.73158 0.72755 1.93554 1.83820 1.63343 1.56426 1.93506 1.39107 1.76248 1.85939 1.55733 1.90314 1.19054 1.15361 1.63963 1.36220 1.07280 0.98963 1.24290 1.03657 0.87555 1.05370 1.21098 0.98443 1.00453 0.93162 1.26544 1.04262 1.17952 1.02020 0.78264 0.65570 0.64997 0.63051 1.26219 1.16403 1.05027 1.09065 1.26259 1.12388 1.09026 1.09139 1.28555 0.94198 1.10868 1.13101 1.24763 1.01863 0.94809 0.96354 1.21336 0.87631 1.03296 1.06388 1.84343 0.93768 1.07343 1.68331 0.88266 0.90354 0.90095 0.91080 0.77104 0.71975 0.86229 0.91047 0.89963 0.90154 0.90209 0.89386 0.90862 0.90834 0.90822 0.91247 0.91258 0.91299 0.91508 0.87379 0.88079 0.86844 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.24 8.92 71.24 0.64 0.87 16 2 C -0.17 -0.01 6.13 24.59 0.15 0.14 16 3 C -0.10 -0.22 4.19 -20.92 -0.09 -0.30 16 4 C -0.07 -0.18 2.27 71.24 0.16 -0.02 16 5 O -0.53 0.72 11.21 -148.98 -1.67 -0.95 16 6 Si 0.99 6.17 26.39 68.60 1.81 7.98 16 7 H -0.26 -2.85 7.11 99.48 0.71 -2.14 16 8 H -0.25 -1.74 7.11 99.48 0.71 -1.03 16 9 H -0.23 -0.87 5.73 99.48 0.57 -0.30 16 10 C -0.70 -2.19 3.81 21.22 0.08 -2.11 16 11 S 2.68 15.93 4.53 -56.49 -0.26 15.68 16 12 O -0.98 -11.49 16.11 -128.00 -2.06 -13.55 16 13 O -0.96 -8.19 12.58 -128.00 -1.61 -9.81 16 14 N -0.95 -0.32 5.52 37.02 0.20 -0.11 16 15 N -0.24 0.41 5.01 -334.15 -1.67 -1.26 16 16 C -0.08 0.11 2.41 86.28 0.21 0.32 16 17 C -0.09 0.36 5.69 30.78 0.18 0.53 16 18 C -0.42 2.87 5.04 72.30 0.36 3.23 16 19 Si 1.09 -9.41 11.99 68.60 0.82 -8.59 16 20 C -0.46 3.52 8.65 113.37 0.98 4.51 16 21 C -0.46 2.26 8.65 113.37 0.98 3.24 16 22 C -0.29 1.89 4.84 127.53 0.62 2.51 16 23 C -0.06 -0.04 4.86 24.59 0.12 0.08 16 24 C -0.13 0.17 8.41 71.24 0.60 0.77 16 25 S 0.20 -0.37 23.31 -56.49 -1.32 -1.68 16 26 H 0.10 -0.55 8.14 -2.38 -0.02 -0.57 16 27 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 28 H 0.08 -0.04 4.40 -2.39 -0.01 -0.05 16 29 H 0.07 0.12 5.23 -2.39 -0.01 0.11 16 30 H 0.38 -2.94 7.91 -74.06 -0.59 -3.53 16 31 H 0.44 -1.46 8.95 -219.53 -1.96 -3.43 16 32 H 0.12 0.13 1.49 -27.51 -0.04 0.09 16 33 H 0.07 -0.23 5.47 -2.39 -0.01 -0.25 16 34 H 0.08 -0.43 7.96 -2.39 -0.02 -0.45 16 35 H 0.08 -0.27 7.96 -2.39 -0.02 -0.29 16 36 H 0.08 -0.60 7.99 -2.39 -0.02 -0.61 16 37 H 0.09 -0.66 7.99 -2.39 -0.02 -0.68 16 38 H 0.07 -0.55 7.96 -2.39 -0.02 -0.57 16 39 H 0.07 -0.52 7.96 -2.38 -0.02 -0.53 16 40 H 0.07 -0.59 7.96 -2.39 -0.02 -0.61 16 41 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 42 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 43 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 44 H 0.07 -0.57 6.81 -2.39 -0.02 -0.59 16 45 H 0.11 -0.91 7.99 -2.39 -0.02 -0.92 16 46 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 47 H 0.11 -0.25 4.85 -2.39 -0.01 -0.27 16 48 H 0.10 0.09 7.10 -2.39 -0.02 0.07 16 Total: 0.00 -15.25 374.82 -1.72 -16.97 By element: Atomic # 1 Polarization: -17.51 SS G_CDS: -0.96 Total: -18.46 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: 4.99 Total: 13.79 kcal Atomic # 7 Polarization: 0.10 SS G_CDS: -1.47 Total: -1.37 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -5.34 Total: -24.31 kcal Atomic # 14 Polarization: -3.24 SS G_CDS: 2.63 Total: -0.60 kcal Atomic # 16 Polarization: 15.57 SS G_CDS: -1.57 Total: 13.99 kcal Total: -15.25 -1.72 -16.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607848_15065288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.003 kcal (2) G-P(sol) polarization free energy of solvation -15.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds