Wall clock time and date at job start Mon Mar 8 2021 11:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86298 * 109.98515 * 2 1 4 4 C 1.87526 * 110.00450 * 121.31924 * 2 1 3 5 5 C 1.53927 * 106.84853 * 163.09609 * 4 2 1 6 6 C 1.52630 * 109.31188 * 302.79323 * 5 4 2 7 7 N 1.46353 * 111.88769 * 76.52444 * 6 5 4 8 8 N 1.36608 * 110.99858 * 156.80650 * 7 6 5 9 9 S 1.65595 * 120.00224 * 113.14487 * 8 7 6 10 10 O 1.42096 * 106.40474 * 185.78216 * 9 8 7 11 11 O 1.42102 * 106.40409 * 52.85839 * 9 8 7 12 12 C 1.76202 * 107.21891 * 299.32204 * 9 8 7 13 13 C 1.38209 * 120.00317 * 118.48547 * 12 9 8 14 14 C 1.38255 * 120.00032 * 180.02562 * 13 12 9 15 15 C 1.38209 * 120.00322 * 359.95041 * 14 13 12 16 16 C 1.38257 * 119.99677 * 359.97438 * 15 14 13 17 17 C 1.38211 * 120.00279 * 0.28091 * 16 15 14 18 18 C 1.50703 * 120.00307 * 179.72397 * 17 16 15 19 19 O 1.42901 * 109.47385 * 105.26038 * 18 17 16 20 20 Si 1.86296 * 109.46877 * 345.25857 * 18 17 16 21 21 H 1.48498 * 109.47269 * 305.75086 * 20 18 17 22 22 H 1.48505 * 109.46966 * 65.75041 * 20 18 17 23 23 H 1.48499 * 109.47221 * 185.74713 * 20 18 17 24 24 C 1.47722 * 111.30607 * 280.97767 * 7 6 5 25 25 H 1.09008 * 109.46634 * 303.67112 * 1 2 3 26 26 H 1.08998 * 109.47226 * 63.66842 * 1 2 3 27 27 H 1.09000 * 109.46914 * 183.67693 * 1 2 3 28 28 H 1.09002 * 109.46938 * 186.31119 * 3 2 1 29 29 H 1.09003 * 109.47196 * 306.31183 * 3 2 1 30 30 H 1.09000 * 109.46776 * 66.31674 * 3 2 1 31 31 H 1.08999 * 109.97526 * 43.76001 * 4 2 1 32 32 H 1.08999 * 110.04861 * 282.47211 * 4 2 1 33 33 H 1.08997 * 109.49720 * 182.84593 * 5 4 2 34 34 H 1.09002 * 109.50045 * 62.74274 * 5 4 2 35 35 H 1.08994 * 108.99767 * 315.90265 * 6 5 4 36 36 H 1.09003 * 108.93213 * 197.09869 * 6 5 4 37 37 H 0.97001 * 119.99527 * 293.14331 * 8 7 6 38 38 H 1.07998 * 119.99914 * 359.97438 * 13 12 9 39 39 H 1.08006 * 120.00135 * 179.97438 * 14 13 12 40 40 H 1.08005 * 120.00573 * 180.02562 * 15 14 13 41 41 H 1.08007 * 119.99940 * 179.97438 * 16 15 14 42 42 H 1.09003 * 109.47077 * 225.25899 * 18 17 16 43 43 H 0.96698 * 114.00025 * 175.07830 * 19 18 17 44 44 H 1.09001 * 109.94909 * 179.68763 * 24 7 6 45 45 H 1.09001 * 109.94864 * 300.93684 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4997 1.7508 0.0000 4 6 2.5045 -0.9160 1.5053 5 6 3.9816 -1.2492 1.2289 6 6 4.0831 -2.0638 -0.0579 7 7 3.9261 -1.2261 -1.2477 8 7 4.5041 -1.8116 -2.3382 9 16 3.5607 -2.3349 -3.5945 10 8 4.4293 -3.0084 -4.4951 11 8 2.7506 -1.2311 -3.9749 12 6 2.4663 -3.5568 -2.9512 13 6 1.1000 -3.3542 -2.9979 14 6 0.2413 -4.3128 -2.4926 15 6 0.7492 -5.4742 -1.9417 16 6 2.1160 -5.6775 -1.8964 17 6 2.9746 -4.7169 -2.3967 18 6 4.4646 -4.9359 -2.3416 19 8 4.9468 -5.2620 -3.6467 20 14 4.8438 -6.3353 -1.1719 21 1 4.2224 -6.0592 0.1483 22 1 4.2965 -7.6018 -1.7213 23 1 6.3146 -6.4607 -1.0102 24 6 2.5042 -0.9182 -1.5036 25 1 -0.3633 0.5698 0.8553 26 1 -0.3633 0.4558 -0.9210 27 1 -0.3633 -1.0256 0.0659 28 1 3.5839 1.7431 -0.1130 29 1 2.0520 2.3003 -0.8281 30 1 2.2359 2.2333 0.9411 31 1 1.9367 -1.8347 1.6522 32 1 2.4246 -0.2837 2.3896 33 1 4.3854 -1.8287 2.0591 34 1 4.5489 -0.3248 1.1199 35 1 3.3054 -2.8275 -0.0565 36 1 5.0579 -2.5503 -0.0925 37 1 5.4672 -1.9207 -2.3766 38 1 0.7030 -2.4468 -3.4284 39 1 -0.8264 -4.1543 -2.5287 40 1 0.0784 -6.2232 -1.5473 41 1 2.5130 -6.5849 -1.4655 42 1 4.9527 -4.0266 -1.9907 43 1 5.9088 -5.3427 -3.7018 44 1 2.4134 -0.2899 -2.3897 45 1 1.9428 -1.8421 -1.6425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607848_2726874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:31:12 Heat of formation + Delta-G solvation = -60.517973 kcal Electronic energy + Delta-G solvation = -28912.975400 eV Core-core repulsion = 25182.996134 eV Total energy + Delta-G solvation = -3729.979265 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 344.118 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.87775 -39.79466 -38.34620 -37.39254 -36.72740 -34.93239 -33.05508 -32.63562 -30.76764 -29.43541 -28.43883 -27.80033 -26.98045 -24.85377 -24.44830 -22.80558 -21.96739 -20.58922 -19.20412 -18.95252 -18.59290 -18.01121 -17.18702 -16.96430 -16.34924 -16.02643 -15.82156 -15.67269 -15.34978 -15.21348 -14.91989 -14.61781 -14.46111 -14.24095 -14.08012 -13.95039 -13.86722 -13.56314 -13.34530 -13.27727 -13.24753 -13.18980 -12.99338 -12.91193 -12.46703 -12.35951 -12.28224 -12.13505 -12.10972 -12.00880 -11.81684 -11.53655 -10.93894 -10.89207 -10.53716 -10.40851 -10.34357 -10.13613 -9.15968 -0.68043 -0.32911 0.02439 0.88544 1.26015 1.30943 1.40149 1.66745 1.71203 1.79364 1.95540 2.25890 2.47791 2.69924 2.86530 3.13499 3.41637 3.58490 3.75072 3.82672 3.84771 3.89772 4.02134 4.14231 4.22342 4.25615 4.42688 4.46961 4.56441 4.58327 4.66034 4.66604 4.68208 4.79823 4.83961 4.86999 4.89109 5.00294 5.03437 5.15487 5.16792 5.24346 5.32807 5.43312 5.61624 5.62338 5.70080 6.51408 6.56119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.040 2.960 3 C -0.443 4.443 4 C -0.412 4.412 5 C -0.098 4.098 6 C 0.003 3.997 7 N -0.245 5.245 8 N -0.960 5.960 9 S 2.669 3.331 10 O -0.927 6.927 11 O -0.951 6.951 12 C -0.657 4.657 13 C -0.023 4.023 14 C -0.133 4.133 15 C -0.057 4.057 16 C -0.141 4.141 17 C 0.025 3.975 18 C -0.120 4.120 19 O -0.512 6.512 20 Si 0.946 3.054 21 H -0.245 1.245 22 H -0.241 1.241 23 H -0.247 1.247 24 C -0.340 4.340 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.046 0.954 36 H 0.082 0.918 37 H 0.429 0.571 38 H 0.148 0.852 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.072 0.928 43 H 0.383 0.617 44 H 0.149 0.851 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.646 -0.869 5.954 6.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.232 2.768 3 C -0.552 4.552 4 C -0.498 4.498 5 C -0.137 4.137 6 C -0.126 4.126 7 N -0.065 5.065 8 N -0.810 5.810 9 S 2.755 3.245 10 O -0.915 6.915 11 O -0.940 6.940 12 C -0.743 4.743 13 C -0.042 4.042 14 C -0.152 4.152 15 C -0.075 4.075 16 C -0.159 4.159 17 C 0.023 3.977 18 C -0.231 4.231 19 O -0.318 6.318 20 Si 0.767 3.233 21 H -0.169 1.169 22 H -0.164 1.164 23 H -0.171 1.171 24 C -0.513 4.513 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.268 0.732 38 H 0.166 0.834 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.089 0.911 43 H 0.231 0.769 44 H 0.166 0.834 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.934 -0.860 5.507 5.651 hybrid contribution 0.045 -1.220 0.150 1.230 sum -0.889 -2.080 5.657 6.092 Atomic orbital electron populations 1.26114 1.20226 1.04642 1.05002 0.79038 0.66218 0.67612 0.63903 1.26018 1.07220 1.17593 1.04356 1.26403 1.00828 1.08172 1.14428 1.21162 0.96629 1.00999 0.94924 1.22898 1.02434 0.95941 0.91354 1.63441 1.13772 1.35597 0.93698 1.55914 1.19022 1.75138 1.30954 1.03246 0.73955 0.73738 0.73551 1.93681 1.64268 1.74348 1.59173 1.93543 1.69648 1.50133 1.80691 1.30935 1.10380 1.15878 1.17087 1.21051 0.90971 0.99063 0.93153 1.21398 1.00603 0.94088 0.99085 1.21459 0.94935 0.96763 0.94380 1.21165 0.94150 0.98764 1.01839 1.18835 0.93442 0.92230 0.93163 1.25177 0.93413 1.08995 0.95497 1.86701 1.27144 1.92891 1.25056 0.85699 0.81570 0.78498 0.77579 1.16858 1.16443 1.17077 1.29073 0.90083 1.09784 1.22331 0.90658 0.90727 0.91201 0.90311 0.91021 0.91244 0.90723 0.90019 0.90881 0.90109 0.93527 0.89916 0.73163 0.83399 0.84403 0.84546 0.85181 0.91057 0.76876 0.83378 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.93 8.65 101.05 0.87 1.80 16 2 Si 1.04 -2.62 11.99 -169.99 -2.04 -4.66 16 3 C -0.44 0.63 8.65 101.05 0.87 1.51 16 4 C -0.41 1.05 5.03 37.64 0.19 1.24 16 5 C -0.10 0.23 5.74 -26.44 -0.15 0.08 16 6 C 0.00 -0.01 5.33 -4.31 -0.02 -0.03 16 7 N -0.25 0.12 5.01 -56.97 -0.29 -0.17 16 8 N -0.96 0.07 4.51 60.35 0.27 0.34 16 9 S 2.67 7.64 4.54 -107.50 -0.49 7.15 16 10 O -0.93 -4.94 15.13 -66.39 -1.00 -5.95 16 11 O -0.95 -4.44 13.57 -57.17 -0.78 -5.22 16 12 C -0.66 -1.36 4.58 -39.58 -0.18 -1.55 16 13 C -0.02 -0.02 7.67 -39.59 -0.30 -0.33 16 14 C -0.13 0.08 10.05 -39.59 -0.40 -0.32 16 15 C -0.06 0.04 10.05 -39.58 -0.40 -0.36 16 16 C -0.14 -0.07 8.66 -39.58 -0.34 -0.42 16 17 C 0.02 0.04 5.29 -104.62 -0.55 -0.51 16 18 C -0.12 -0.03 1.89 36.01 0.07 0.04 16 19 O -0.51 -0.82 10.41 -57.68 -0.60 -1.42 16 20 Si 0.95 -0.85 25.37 -169.99 -4.31 -5.17 16 21 H -0.25 0.25 7.11 56.52 0.40 0.66 16 22 H -0.24 -0.05 6.98 56.52 0.39 0.35 16 23 H -0.25 0.27 7.11 56.52 0.40 0.67 16 24 C -0.34 0.06 3.03 60.52 0.18 0.24 16 25 H 0.07 -0.17 7.96 -51.92 -0.41 -0.58 16 26 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 27 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 28 H 0.08 -0.08 7.96 -51.93 -0.41 -0.49 16 29 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 30 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 31 H 0.07 -0.19 7.99 -51.93 -0.42 -0.60 16 32 H 0.08 -0.24 7.99 -51.93 -0.42 -0.65 16 33 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 34 H 0.08 -0.20 7.96 -51.93 -0.41 -0.62 16 35 H 0.05 -0.08 7.78 -51.93 -0.40 -0.48 16 36 H 0.08 -0.26 8.03 -51.93 -0.42 -0.68 16 37 H 0.43 -1.03 8.75 -178.80 -1.56 -2.60 16 38 H 0.15 -0.02 7.35 -52.49 -0.39 -0.40 16 39 H 0.14 -0.42 8.06 -52.48 -0.42 -0.84 16 40 H 0.14 -0.45 8.06 -52.48 -0.42 -0.87 16 41 H 0.13 -0.12 5.04 -52.48 -0.26 -0.38 16 42 H 0.07 -0.14 5.71 -51.93 -0.30 -0.43 16 43 H 0.38 -1.02 8.86 45.56 0.40 -0.62 16 44 H 0.15 0.17 5.48 -51.93 -0.28 -0.11 16 45 H 0.07 -0.04 3.77 -51.93 -0.20 -0.24 16 LS Contribution 353.10 15.07 5.32 5.32 Total: 0.00 -8.79 353.10 -11.28 -20.07 By element: Atomic # 1 Polarization: -4.50 SS G_CDS: -7.20 Total: -11.71 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -0.16 Total: 1.40 kcal Atomic # 7 Polarization: 0.19 SS G_CDS: -0.01 Total: 0.18 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -2.38 Total: -12.59 kcal Atomic # 14 Polarization: -3.47 SS G_CDS: -6.35 Total: -9.82 kcal Atomic # 16 Polarization: 7.64 SS G_CDS: -0.49 Total: 7.15 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -8.79 -11.28 -20.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607848_2726874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.447 kcal (2) G-P(sol) polarization free energy of solvation -8.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds