Wall clock time and date at job start Mon Mar 8 2021 11:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86298 * 109.98515 * 2 1 4 4 C 1.87526 * 110.00450 * 121.31924 * 2 1 3 5 5 C 1.53927 * 106.84853 * 163.09609 * 4 2 1 6 6 C 1.52630 * 109.31188 * 302.79323 * 5 4 2 7 7 N 1.46353 * 111.88769 * 76.52444 * 6 5 4 8 8 N 1.36608 * 110.99858 * 156.80650 * 7 6 5 9 9 S 1.65595 * 120.00224 * 113.14487 * 8 7 6 10 10 O 1.42096 * 106.40474 * 185.78216 * 9 8 7 11 11 O 1.42102 * 106.40409 * 52.85839 * 9 8 7 12 12 C 1.76202 * 107.21891 * 299.32204 * 9 8 7 13 13 C 1.38209 * 120.00317 * 118.48547 * 12 9 8 14 14 C 1.38255 * 120.00032 * 180.02562 * 13 12 9 15 15 C 1.38209 * 120.00322 * 359.95041 * 14 13 12 16 16 C 1.38257 * 119.99677 * 359.97438 * 15 14 13 17 17 C 1.38211 * 120.00279 * 0.28091 * 16 15 14 18 18 C 1.50703 * 120.00307 * 179.72397 * 17 16 15 19 19 O 1.42901 * 109.47385 * 105.26038 * 18 17 16 20 20 Si 1.86296 * 109.46877 * 345.25857 * 18 17 16 21 21 H 1.48498 * 109.47269 * 305.75086 * 20 18 17 22 22 H 1.48505 * 109.46966 * 65.75041 * 20 18 17 23 23 H 1.48499 * 109.47221 * 185.74713 * 20 18 17 24 24 C 1.47722 * 111.30607 * 280.97767 * 7 6 5 25 25 H 1.09008 * 109.46634 * 303.67112 * 1 2 3 26 26 H 1.08998 * 109.47226 * 63.66842 * 1 2 3 27 27 H 1.09000 * 109.46914 * 183.67693 * 1 2 3 28 28 H 1.09002 * 109.46938 * 186.31119 * 3 2 1 29 29 H 1.09003 * 109.47196 * 306.31183 * 3 2 1 30 30 H 1.09000 * 109.46776 * 66.31674 * 3 2 1 31 31 H 1.08999 * 109.97526 * 43.76001 * 4 2 1 32 32 H 1.08999 * 110.04861 * 282.47211 * 4 2 1 33 33 H 1.08997 * 109.49720 * 182.84593 * 5 4 2 34 34 H 1.09002 * 109.50045 * 62.74274 * 5 4 2 35 35 H 1.08994 * 108.99767 * 315.90265 * 6 5 4 36 36 H 1.09003 * 108.93213 * 197.09869 * 6 5 4 37 37 H 0.97001 * 119.99527 * 293.14331 * 8 7 6 38 38 H 1.07998 * 119.99914 * 359.97438 * 13 12 9 39 39 H 1.08006 * 120.00135 * 179.97438 * 14 13 12 40 40 H 1.08005 * 120.00573 * 180.02562 * 15 14 13 41 41 H 1.08007 * 119.99940 * 179.97438 * 16 15 14 42 42 H 1.09003 * 109.47077 * 225.25899 * 18 17 16 43 43 H 0.96698 * 114.00025 * 175.07830 * 19 18 17 44 44 H 1.09001 * 109.94909 * 179.68763 * 24 7 6 45 45 H 1.09001 * 109.94864 * 300.93684 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4997 1.7508 0.0000 4 6 2.5045 -0.9160 1.5053 5 6 3.9816 -1.2492 1.2289 6 6 4.0831 -2.0638 -0.0579 7 7 3.9261 -1.2261 -1.2477 8 7 4.5041 -1.8116 -2.3382 9 16 3.5607 -2.3349 -3.5945 10 8 4.4293 -3.0084 -4.4951 11 8 2.7506 -1.2311 -3.9749 12 6 2.4663 -3.5568 -2.9512 13 6 1.1000 -3.3542 -2.9979 14 6 0.2413 -4.3128 -2.4926 15 6 0.7492 -5.4742 -1.9417 16 6 2.1160 -5.6775 -1.8964 17 6 2.9746 -4.7169 -2.3967 18 6 4.4646 -4.9359 -2.3416 19 8 4.9468 -5.2620 -3.6467 20 14 4.8438 -6.3353 -1.1719 21 1 4.2224 -6.0592 0.1483 22 1 4.2965 -7.6018 -1.7213 23 1 6.3146 -6.4607 -1.0102 24 6 2.5042 -0.9182 -1.5036 25 1 -0.3633 0.5698 0.8553 26 1 -0.3633 0.4558 -0.9210 27 1 -0.3633 -1.0256 0.0659 28 1 3.5839 1.7431 -0.1130 29 1 2.0520 2.3003 -0.8281 30 1 2.2359 2.2333 0.9411 31 1 1.9367 -1.8347 1.6522 32 1 2.4246 -0.2837 2.3896 33 1 4.3854 -1.8287 2.0591 34 1 4.5489 -0.3248 1.1199 35 1 3.3054 -2.8275 -0.0565 36 1 5.0579 -2.5503 -0.0925 37 1 5.4672 -1.9207 -2.3766 38 1 0.7030 -2.4468 -3.4284 39 1 -0.8264 -4.1543 -2.5287 40 1 0.0784 -6.2232 -1.5473 41 1 2.5130 -6.5849 -1.4655 42 1 4.9527 -4.0266 -1.9907 43 1 5.9088 -5.3427 -3.7018 44 1 2.4134 -0.2899 -2.3897 45 1 1.9428 -1.8421 -1.6425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607848_2726874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:31:11 Heat of formation + Delta-G solvation = -58.773450 kcal Electronic energy + Delta-G solvation = -28912.899751 eV Core-core repulsion = 25182.996134 eV Total energy + Delta-G solvation = -3729.903617 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 344.118 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.84672 -39.77034 -38.50525 -37.45652 -36.99880 -34.79743 -33.03373 -32.62026 -30.72800 -29.28339 -28.29240 -27.67093 -26.94314 -24.78502 -24.42279 -22.78339 -21.80360 -20.69763 -19.22399 -19.00584 -18.59252 -18.09285 -17.17047 -16.95332 -16.32527 -15.97211 -15.93538 -15.65638 -15.32326 -15.17683 -14.78006 -14.50169 -14.40811 -14.18835 -13.97535 -13.86790 -13.72555 -13.55328 -13.37530 -13.24628 -13.18903 -13.14019 -13.08330 -12.98444 -12.48749 -12.28939 -12.20045 -12.13529 -11.99965 -11.86537 -11.74948 -11.52106 -10.85912 -10.74356 -10.51652 -10.36298 -10.18480 -10.11849 -9.12855 -0.80404 -0.35994 0.03857 0.96020 1.36350 1.40185 1.48140 1.76910 1.79023 1.98287 2.05376 2.27766 2.55709 2.64546 2.88544 3.20650 3.34533 3.63923 3.81944 3.85593 3.97994 4.05368 4.19314 4.24046 4.27165 4.30859 4.50169 4.62614 4.70445 4.73244 4.77504 4.85176 4.85447 4.91786 4.92480 4.94879 5.01409 5.09745 5.12396 5.21218 5.33334 5.40593 5.54001 5.61461 5.67722 5.74171 5.78428 6.57234 6.74210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.091 2.909 3 C -0.458 4.458 4 C -0.413 4.413 5 C -0.100 4.100 6 C -0.006 4.006 7 N -0.245 5.245 8 N -0.952 5.952 9 S 2.671 3.329 10 O -0.961 6.961 11 O -0.979 6.979 12 C -0.669 4.669 13 C -0.038 4.038 14 C -0.133 4.133 15 C -0.055 4.055 16 C -0.154 4.154 17 C 0.009 3.991 18 C -0.135 4.135 19 O -0.537 6.537 20 Si 0.978 3.022 21 H -0.239 1.239 22 H -0.260 1.260 23 H -0.245 1.245 24 C -0.362 4.362 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.097 0.903 37 H 0.438 0.562 38 H 0.149 0.851 39 H 0.163 0.837 40 H 0.166 0.834 41 H 0.142 0.858 42 H 0.086 0.914 43 H 0.397 0.603 44 H 0.130 0.870 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.119 -1.604 7.872 8.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.280 2.720 3 C -0.565 4.565 4 C -0.500 4.500 5 C -0.139 4.139 6 C -0.135 4.135 7 N -0.065 5.065 8 N -0.804 5.804 9 S 2.760 3.240 10 O -0.948 6.948 11 O -0.968 6.968 12 C -0.757 4.757 13 C -0.057 4.057 14 C -0.152 4.152 15 C -0.073 4.073 16 C -0.172 4.172 17 C 0.007 3.993 18 C -0.244 4.244 19 O -0.346 6.346 20 Si 0.798 3.202 21 H -0.162 1.162 22 H -0.184 1.184 23 H -0.168 1.168 24 C -0.532 4.532 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.115 0.885 37 H 0.280 0.720 38 H 0.167 0.833 39 H 0.181 0.819 40 H 0.183 0.817 41 H 0.159 0.841 42 H 0.104 0.896 43 H 0.247 0.753 44 H 0.148 0.852 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.360 -1.563 7.390 7.675 hybrid contribution 0.159 -0.983 -0.445 1.091 sum -1.201 -2.545 6.944 7.493 Atomic orbital electron populations 1.26221 1.20737 1.04998 1.05003 0.78286 0.65306 0.65889 0.62555 1.26201 1.06943 1.18979 1.04413 1.26403 1.00729 1.08461 1.14395 1.21208 0.96861 1.01140 0.94710 1.23059 1.03375 0.96095 0.90935 1.63498 1.13773 1.35572 0.93690 1.55733 1.19280 1.74679 1.30757 1.02891 0.73747 0.73429 0.73922 1.93629 1.65205 1.74898 1.61110 1.93515 1.70254 1.51261 1.81780 1.30760 1.10630 1.16035 1.18251 1.21242 0.90955 0.99812 0.93712 1.21721 1.01686 0.93593 0.98162 1.21853 0.94919 0.97150 0.93384 1.21447 0.94820 0.98962 1.01986 1.19101 0.94418 0.92309 0.93427 1.25464 0.92982 1.10640 0.95268 1.86650 1.28613 1.93064 1.26246 0.85258 0.81430 0.76587 0.76960 1.16173 1.18385 1.16796 1.29355 0.90492 1.10186 1.23145 0.90140 0.91204 0.90746 0.90843 0.91755 0.90574 0.90255 0.89166 0.89891 0.89981 0.93352 0.88492 0.71988 0.83321 0.81911 0.81684 0.84052 0.89630 0.75293 0.85204 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.99 8.65 113.37 0.98 2.97 16 2 Si 1.09 -5.50 11.99 68.60 0.82 -4.68 16 3 C -0.46 1.08 8.65 113.37 0.98 2.06 16 4 C -0.41 2.61 5.03 72.29 0.36 2.97 16 5 C -0.10 0.58 5.74 30.78 0.18 0.76 16 6 C -0.01 0.02 5.33 86.28 0.46 0.48 16 7 N -0.25 0.11 5.01 -334.15 -1.67 -1.57 16 8 N -0.95 -0.96 4.51 37.02 0.17 -0.79 16 9 S 2.67 20.55 4.54 -56.49 -0.26 20.29 16 10 O -0.96 -12.48 15.13 -119.19 -1.80 -14.29 16 11 O -0.98 -11.67 13.57 -128.00 -1.74 -13.41 16 12 C -0.67 -3.53 4.58 22.27 0.10 -3.43 16 13 C -0.04 -0.10 7.67 22.27 0.17 0.07 16 14 C -0.13 0.25 10.05 22.27 0.22 0.47 16 15 C -0.06 0.14 10.05 22.27 0.22 0.37 16 16 C -0.15 -0.10 8.66 22.27 0.19 0.09 16 17 C 0.01 0.03 5.29 -19.86 -0.11 -0.07 16 18 C -0.13 -0.12 1.89 71.24 0.13 0.01 16 19 O -0.54 -2.41 10.41 -127.51 -1.33 -3.74 16 20 Si 0.98 -2.21 25.37 68.60 1.74 -0.47 16 21 H -0.24 0.83 7.11 99.48 0.71 1.54 16 22 H -0.26 -0.14 6.98 99.48 0.69 0.56 16 23 H -0.24 0.73 7.11 99.48 0.71 1.44 16 24 C -0.36 -0.24 3.03 127.53 0.39 0.15 16 25 H 0.08 -0.42 7.96 -2.38 -0.02 -0.44 16 26 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 27 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 28 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 29 H 0.06 -0.06 7.96 -2.39 -0.02 -0.08 16 30 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 31 H 0.08 -0.53 7.99 -2.39 -0.02 -0.55 16 32 H 0.09 -0.68 7.99 -2.39 -0.02 -0.70 16 33 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 34 H 0.08 -0.49 7.96 -2.39 -0.02 -0.50 16 35 H 0.05 -0.19 7.78 -2.39 -0.02 -0.21 16 36 H 0.10 -0.70 8.03 -2.39 -0.02 -0.71 16 37 H 0.44 -1.65 8.75 -219.53 -1.92 -3.57 16 38 H 0.15 0.21 7.35 -2.91 -0.02 0.19 16 39 H 0.16 -1.23 8.06 -2.91 -0.02 -1.25 16 40 H 0.17 -1.47 8.06 -2.91 -0.02 -1.49 16 41 H 0.14 -0.35 5.04 -2.91 -0.01 -0.36 16 42 H 0.09 -0.28 5.71 -2.39 -0.01 -0.30 16 43 H 0.40 -1.59 8.86 -74.06 -0.66 -2.25 16 44 H 0.13 0.59 5.48 -2.39 -0.01 0.57 16 45 H 0.07 -0.01 3.77 -2.39 -0.01 -0.02 16 Total: 0.00 -20.99 353.10 -0.59 -21.59 By element: Atomic # 1 Polarization: -9.02 SS G_CDS: -0.81 Total: -9.84 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 4.29 Total: 6.91 kcal Atomic # 7 Polarization: -0.85 SS G_CDS: -1.51 Total: -2.36 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -4.87 Total: -31.44 kcal Atomic # 14 Polarization: -7.71 SS G_CDS: 2.56 Total: -5.15 kcal Atomic # 16 Polarization: 20.55 SS G_CDS: -0.26 Total: 20.29 kcal Total: -20.99 -0.59 -21.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607848_2726874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.187 kcal (2) G-P(sol) polarization free energy of solvation -20.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds