Wall clock time and date at job start Mon Mar 8 2021 11:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86301 * 109.46979 * 2 1 4 4 C 1.50704 * 109.46673 * 119.99947 * 2 1 3 5 5 C 1.38234 * 120.00277 * 65.00447 * 4 2 1 6 6 C 1.38230 * 119.99885 * 180.02562 * 5 4 2 7 7 C 1.38235 * 120.00326 * 359.97438 * 6 5 4 8 8 S 1.76199 * 120.00342 * 179.70391 * 7 6 5 9 9 O 1.42099 * 106.40466 * 203.54194 * 8 7 6 10 10 O 1.42098 * 106.40181 * 336.46004 * 8 7 6 11 11 N 1.65602 * 107.21888 * 89.99875 * 8 7 6 12 12 C 1.46500 * 119.99756 * 65.00258 * 11 8 7 13 13 H 1.08996 * 109.47542 * 334.99772 * 12 11 8 14 14 C 1.53000 * 109.47100 * 95.00096 * 12 11 8 15 15 C 1.53002 * 109.47031 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47238 * 300.00019 * 15 14 12 17 17 H 1.09009 * 109.47122 * 299.99981 * 16 15 14 18 18 C 1.50692 * 109.47447 * 180.02562 * 16 15 14 19 19 N 1.30517 * 126.35167 * 145.02121 * 18 16 15 20 20 N 1.28600 * 109.67716 * 179.97438 * 19 18 16 21 21 C 1.30513 * 109.66970 * 0.02562 * 20 19 18 22 22 N 1.35496 * 126.34430 * 324.71342 * 18 16 15 23 23 C 1.52996 * 109.47172 * 59.99674 * 16 15 14 24 24 C 1.52996 * 109.47377 * 299.99972 * 23 16 15 25 25 C 1.38234 * 119.99814 * 359.97438 * 7 6 5 26 26 C 1.38235 * 119.99518 * 245.02129 * 4 2 1 27 27 H 0.96693 * 114.00184 * 299.99904 * 1 2 3 28 28 H 1.08999 * 109.47201 * 239.99372 * 2 1 3 29 29 H 1.48497 * 109.99746 * 299.99680 * 3 2 1 30 30 H 1.48500 * 110.00139 * 61.31653 * 3 2 1 31 31 H 1.07992 * 119.99701 * 359.97438 * 5 4 2 32 32 H 1.08000 * 120.00356 * 179.97438 * 6 5 4 33 33 H 0.97000 * 119.99945 * 245.00458 * 11 8 7 34 34 H 1.08997 * 109.46972 * 299.99617 * 14 12 11 35 35 H 1.08999 * 109.47129 * 59.99976 * 14 12 11 36 36 H 1.08997 * 109.47056 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.46910 * 60.00177 * 15 14 12 38 38 H 1.08006 * 126.34742 * 179.97438 * 21 20 19 39 39 H 0.97000 * 126.98315 * 0.03681 * 22 18 16 40 40 H 1.09001 * 109.47676 * 179.97438 * 23 16 15 41 41 H 1.09005 * 109.47426 * 60.00583 * 23 16 15 42 42 H 1.08996 * 109.47521 * 300.00089 * 24 23 16 43 43 H 1.09007 * 109.47281 * 179.97438 * 24 23 16 44 44 H 1.08001 * 120.00279 * 180.02562 * 25 7 6 45 45 H 1.07997 * 120.00439 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6847 -2.0602 1.3984 6 6 2.1450 -2.7116 2.5274 7 6 2.8523 -2.0135 3.4883 8 16 3.4322 -2.8422 4.9311 9 8 3.5996 -1.8431 5.9276 10 8 2.5979 -3.9795 5.1032 11 7 4.9460 -3.4201 4.5893 12 6 6.0436 -2.4869 4.3235 13 1 5.6379 -1.5432 3.9588 14 6 6.8272 -2.2402 5.6143 15 6 7.9738 -1.2661 5.3365 16 6 8.9058 -1.8632 4.2803 17 1 9.3112 -2.8070 4.6452 18 6 10.0355 -0.9040 4.0072 19 7 11.2697 -1.2223 3.7263 20 7 11.9635 -0.1536 3.5519 21 6 11.2035 0.8949 3.7140 22 7 9.9569 0.4486 4.0019 23 6 8.1222 -2.1099 2.9896 24 6 6.9756 -3.0841 3.2673 25 6 3.0997 -0.6640 3.3199 26 6 2.6383 -0.0121 2.1915 27 1 -0.3933 0.4416 0.7650 28 1 1.7924 -0.5139 -0.8899 29 1 1.5615 2.4678 -1.2085 30 1 1.5879 2.4586 1.2242 31 1 1.1319 -2.6055 0.6480 32 1 1.9520 -3.7661 2.6589 33 1 5.1059 -4.3765 4.5651 34 1 6.1631 -1.8152 6.3669 35 1 7.2329 -3.1839 5.9789 36 1 8.5323 -1.0907 6.2560 37 1 7.5684 -0.3224 4.9716 38 1 11.5102 1.9271 3.6300 39 1 9.1689 0.9880 4.1723 40 1 8.7862 -2.5349 2.2369 41 1 7.7168 -1.1662 2.6245 42 1 7.3809 -4.0278 3.6322 43 1 6.4171 -3.2595 2.3478 44 1 3.6527 -0.1185 4.0703 45 1 2.8310 1.0424 2.0603 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607854_13421422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:32:37 Heat of formation + Delta-G solvation = -4.666810 kcal Electronic energy + Delta-G solvation = -31044.118359 eV Core-core repulsion = 26770.162222 eV Total energy + Delta-G solvation = -4273.956137 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.124 amu Computer time = 2.92 seconds Orbital eigenvalues (eV) -44.14219 -40.87025 -40.24694 -38.30781 -37.98116 -36.94127 -36.07984 -34.57457 -33.18797 -32.37729 -32.13940 -32.08999 -29.33859 -27.39884 -24.77519 -24.27444 -24.11495 -23.40046 -23.15675 -22.22101 -21.39212 -20.58466 -19.42371 -19.32284 -18.72716 -18.33231 -17.79761 -17.05841 -16.83471 -16.66387 -16.44382 -16.34991 -16.12583 -15.90273 -15.55276 -15.54025 -15.15681 -15.00069 -14.63988 -14.48691 -14.30139 -14.08507 -13.84897 -13.51567 -13.42822 -13.17994 -13.11558 -12.81325 -12.79715 -12.65310 -12.54225 -12.46079 -12.21108 -12.14176 -11.92231 -11.87780 -11.83151 -11.64054 -11.29224 -10.88960 -10.71849 -10.55420 -10.30578 -10.20037 -5.19588 -0.81868 -0.49157 0.02190 0.79474 1.01749 1.37787 1.72803 1.76047 1.77306 1.91170 2.18801 2.63344 3.02660 3.09022 3.15147 3.28945 3.30968 3.42259 3.55867 3.60543 3.61446 3.74574 3.87109 3.91052 3.93051 3.99101 4.08287 4.14341 4.17096 4.22750 4.24515 4.31658 4.43170 4.45158 4.51814 4.64316 4.64606 4.77201 4.79077 4.82183 4.82864 4.89552 4.92691 5.05144 5.08321 5.12100 5.15267 5.52807 5.74963 6.01647 6.14350 7.74543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.524 6.524 2 C -0.084 4.084 3 Si 0.687 3.313 4 C -0.061 4.061 5 C -0.112 4.112 6 C -0.016 4.016 7 C -0.674 4.674 8 S 2.692 3.308 9 O -0.951 6.951 10 O -0.955 6.955 11 N -1.111 6.111 12 C 0.152 3.848 13 H 0.085 0.915 14 C -0.139 4.139 15 C -0.116 4.116 16 C -0.005 4.005 17 H 0.111 0.889 18 C 0.187 3.813 19 N -0.291 5.291 20 N -0.296 5.296 21 C 0.154 3.846 22 N -0.581 5.581 23 C -0.109 4.109 24 C -0.124 4.124 25 C -0.018 4.018 26 C -0.140 4.140 27 H 0.378 0.622 28 H 0.125 0.875 29 H -0.253 1.253 30 H -0.257 1.257 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.422 0.578 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.222 0.778 39 H 0.429 0.571 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.144 0.856 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 3.251 -2.040 3.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.331 6.331 2 C -0.194 4.194 3 Si 0.588 3.412 4 C -0.061 4.061 5 C -0.131 4.131 6 C -0.035 4.035 7 C -0.761 4.761 8 S 2.782 3.218 9 O -0.940 6.940 10 O -0.945 6.945 11 N -0.871 5.871 12 C 0.045 3.955 13 H 0.103 0.897 14 C -0.178 4.178 15 C -0.155 4.155 16 C -0.026 4.026 17 H 0.129 0.871 18 C -0.083 4.083 19 N -0.132 5.132 20 N -0.135 5.135 21 C -0.135 4.135 22 N -0.194 5.194 23 C -0.148 4.148 24 C -0.163 4.163 25 C -0.037 4.037 26 C -0.158 4.158 27 H 0.226 0.774 28 H 0.142 0.858 29 H -0.178 1.178 30 H -0.182 1.182 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.257 0.743 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.239 0.761 39 H 0.268 0.732 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.162 0.838 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.853 2.961 -2.121 3.741 hybrid contribution -2.495 0.947 0.066 2.669 sum -1.642 3.908 -2.055 4.711 Atomic orbital electron populations 1.86640 1.17078 1.79968 1.49397 1.25206 0.84455 1.11469 0.98280 0.95022 0.91415 0.74095 0.80675 1.20687 0.94943 0.94846 0.95659 1.21214 0.99726 0.93994 0.98178 1.21012 0.91174 1.00178 0.91138 1.31026 1.16055 1.06381 1.22631 1.02019 0.72340 0.73637 0.73846 1.93611 1.85446 1.60756 1.54231 1.93626 1.65462 1.50108 1.85267 1.55638 1.25146 1.17153 1.89122 1.20874 0.87230 0.91750 0.95614 0.89701 1.22089 0.97179 1.00691 0.97813 1.21630 0.96198 0.98805 0.98900 1.19808 0.89591 0.96453 0.96745 0.87071 1.24864 0.97174 0.82703 1.03529 1.74313 1.00431 1.21109 1.17298 1.74314 1.26482 0.94636 1.18084 1.26584 0.81305 1.02342 1.03266 1.44129 1.12751 1.08086 1.54465 1.21571 0.96741 1.00123 0.96393 1.21854 0.95974 0.99528 0.98990 1.20899 0.94559 0.92049 0.96239 1.21208 0.99878 1.00207 0.94535 0.77376 0.85766 1.17756 1.18204 0.84460 0.83837 0.74311 0.89467 0.90307 0.90440 0.91643 0.76134 0.73166 0.90112 0.91435 0.90212 0.90299 0.83820 0.84552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 0.14 12.83 -35.23 -0.45 -0.31 16 2 C -0.08 0.18 2.80 36.01 0.10 0.28 16 3 Si 0.69 -1.90 29.88 -169.99 -5.08 -6.98 16 4 C -0.06 0.10 5.35 -104.62 -0.56 -0.46 16 5 C -0.11 0.13 9.69 -39.59 -0.38 -0.25 16 6 C -0.02 0.01 9.52 -39.59 -0.38 -0.36 16 7 C -0.67 0.68 5.82 -39.58 -0.23 0.45 16 8 S 2.69 -0.85 5.65 -107.50 -0.61 -1.46 16 9 O -0.95 -1.97 16.54 -57.17 -0.95 -2.91 16 10 O -0.95 -2.87 17.28 -57.17 -0.99 -3.85 16 11 N -1.11 3.90 5.47 -4.89 -0.03 3.88 16 12 C 0.15 -0.66 2.65 -67.93 -0.18 -0.84 16 13 H 0.08 -0.46 7.25 -51.93 -0.38 -0.83 16 14 C -0.14 0.53 5.53 -26.73 -0.15 0.38 16 15 C -0.12 0.52 4.98 -26.73 -0.13 0.39 16 16 C -0.01 0.02 2.66 -91.78 -0.24 -0.23 16 17 H 0.11 -0.31 8.14 -51.92 -0.42 -0.73 16 18 C 0.19 -0.10 6.98 -154.99 -1.08 -1.18 16 19 N -0.29 -1.12 12.21 32.79 0.40 -0.72 16 20 N -0.30 -1.13 12.21 29.69 0.36 -0.76 16 21 C 0.15 -0.17 13.19 -89.95 -1.19 -1.36 16 22 N -0.58 1.75 5.96 -11.36 -0.07 1.68 16 23 C -0.11 0.47 5.19 -26.73 -0.14 0.33 16 24 C -0.12 0.62 5.45 -26.73 -0.15 0.48 16 25 C -0.02 0.03 8.92 -39.58 -0.35 -0.32 16 26 C -0.14 0.33 8.67 -39.58 -0.34 -0.02 16 27 H 0.38 -1.11 8.70 45.56 0.40 -0.71 16 28 H 0.12 -0.37 7.96 -51.93 -0.41 -0.79 16 29 H -0.25 -0.20 7.11 56.52 0.40 0.20 16 30 H -0.26 0.23 7.01 56.52 0.40 0.62 16 31 H 0.14 -0.27 8.06 -52.49 -0.42 -0.70 16 32 H 0.14 -0.28 7.62 -52.49 -0.40 -0.68 16 33 H 0.42 -2.12 8.84 -34.47 -0.30 -2.43 16 34 H 0.09 -0.21 7.64 -51.93 -0.40 -0.61 16 35 H 0.08 -0.31 8.14 -51.93 -0.42 -0.74 16 36 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 37 H 0.06 -0.39 7.52 -51.93 -0.39 -0.78 16 38 H 0.22 -1.19 8.06 -52.48 -0.42 -1.61 16 39 H 0.43 -2.85 8.29 -40.82 -0.34 -3.18 16 40 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 41 H 0.07 -0.35 8.14 -51.93 -0.42 -0.77 16 42 H 0.08 -0.41 8.14 -51.93 -0.42 -0.84 16 43 H 0.08 -0.41 8.14 -51.93 -0.42 -0.84 16 44 H 0.14 -0.53 7.62 -52.49 -0.40 -0.93 16 45 H 0.14 -0.58 4.85 -52.49 -0.25 -0.83 16 LS Contribution 378.94 15.07 5.71 5.71 Total: 0.00 -14.01 378.94 -12.98 -26.99 By element: Atomic # 1 Polarization: -12.67 SS G_CDS: -5.89 Total: -18.55 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -5.40 Total: -2.71 kcal Atomic # 7 Polarization: 3.40 SS G_CDS: 0.67 Total: 4.07 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -2.39 Total: -7.08 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: -5.08 Total: -6.98 kcal Atomic # 16 Polarization: -0.85 SS G_CDS: -0.61 Total: -1.46 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -14.01 -12.98 -26.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607854_13421422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.326 kcal (2) G-P(sol) polarization free energy of solvation -14.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.92 seconds