Wall clock time and date at job start Mon Mar 8 2021 11:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86301 * 109.46979 * 2 1 4 4 C 1.50704 * 109.46673 * 119.99947 * 2 1 3 5 5 C 1.38234 * 120.00277 * 65.00447 * 4 2 1 6 6 C 1.38230 * 119.99885 * 180.02562 * 5 4 2 7 7 C 1.38235 * 120.00326 * 359.97438 * 6 5 4 8 8 S 1.76199 * 120.00342 * 179.70391 * 7 6 5 9 9 O 1.42099 * 106.40466 * 203.54194 * 8 7 6 10 10 O 1.42098 * 106.40181 * 336.46004 * 8 7 6 11 11 N 1.65602 * 107.21888 * 89.99875 * 8 7 6 12 12 C 1.46500 * 119.99756 * 65.00258 * 11 8 7 13 13 H 1.08996 * 109.47542 * 334.99772 * 12 11 8 14 14 C 1.53000 * 109.47100 * 95.00096 * 12 11 8 15 15 C 1.53002 * 109.47031 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47238 * 300.00019 * 15 14 12 17 17 H 1.09009 * 109.47122 * 299.99981 * 16 15 14 18 18 C 1.50692 * 109.47447 * 180.02562 * 16 15 14 19 19 N 1.30517 * 126.35167 * 145.02121 * 18 16 15 20 20 N 1.28600 * 109.67716 * 179.97438 * 19 18 16 21 21 C 1.30513 * 109.66970 * 0.02562 * 20 19 18 22 22 N 1.35496 * 126.34430 * 324.71342 * 18 16 15 23 23 C 1.52996 * 109.47172 * 59.99674 * 16 15 14 24 24 C 1.52996 * 109.47377 * 299.99972 * 23 16 15 25 25 C 1.38234 * 119.99814 * 359.97438 * 7 6 5 26 26 C 1.38235 * 119.99518 * 245.02129 * 4 2 1 27 27 H 0.96693 * 114.00184 * 299.99904 * 1 2 3 28 28 H 1.08999 * 109.47201 * 239.99372 * 2 1 3 29 29 H 1.48497 * 109.99746 * 299.99680 * 3 2 1 30 30 H 1.48500 * 110.00139 * 61.31653 * 3 2 1 31 31 H 1.07992 * 119.99701 * 359.97438 * 5 4 2 32 32 H 1.08000 * 120.00356 * 179.97438 * 6 5 4 33 33 H 0.97000 * 119.99945 * 245.00458 * 11 8 7 34 34 H 1.08997 * 109.46972 * 299.99617 * 14 12 11 35 35 H 1.08999 * 109.47129 * 59.99976 * 14 12 11 36 36 H 1.08997 * 109.47056 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.46910 * 60.00177 * 15 14 12 38 38 H 1.08006 * 126.34742 * 179.97438 * 21 20 19 39 39 H 0.97000 * 126.98315 * 0.03681 * 22 18 16 40 40 H 1.09001 * 109.47676 * 179.97438 * 23 16 15 41 41 H 1.09005 * 109.47426 * 60.00583 * 23 16 15 42 42 H 1.08996 * 109.47521 * 300.00089 * 24 23 16 43 43 H 1.09007 * 109.47281 * 179.97438 * 24 23 16 44 44 H 1.08001 * 120.00279 * 180.02562 * 25 7 6 45 45 H 1.07997 * 120.00439 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6847 -2.0602 1.3984 6 6 2.1450 -2.7116 2.5274 7 6 2.8523 -2.0135 3.4883 8 16 3.4322 -2.8422 4.9311 9 8 3.5996 -1.8431 5.9276 10 8 2.5979 -3.9795 5.1032 11 7 4.9460 -3.4201 4.5893 12 6 6.0436 -2.4869 4.3235 13 1 5.6379 -1.5432 3.9588 14 6 6.8272 -2.2402 5.6143 15 6 7.9738 -1.2661 5.3365 16 6 8.9058 -1.8632 4.2803 17 1 9.3112 -2.8070 4.6452 18 6 10.0355 -0.9040 4.0072 19 7 11.2697 -1.2223 3.7263 20 7 11.9635 -0.1536 3.5519 21 6 11.2035 0.8949 3.7140 22 7 9.9569 0.4486 4.0019 23 6 8.1222 -2.1099 2.9896 24 6 6.9756 -3.0841 3.2673 25 6 3.0997 -0.6640 3.3199 26 6 2.6383 -0.0121 2.1915 27 1 -0.3933 0.4416 0.7650 28 1 1.7924 -0.5139 -0.8899 29 1 1.5615 2.4678 -1.2085 30 1 1.5879 2.4586 1.2242 31 1 1.1319 -2.6055 0.6480 32 1 1.9520 -3.7661 2.6589 33 1 5.1059 -4.3765 4.5651 34 1 6.1631 -1.8152 6.3669 35 1 7.2329 -3.1839 5.9789 36 1 8.5323 -1.0907 6.2560 37 1 7.5684 -0.3224 4.9716 38 1 11.5102 1.9271 3.6300 39 1 9.1689 0.9880 4.1723 40 1 8.7862 -2.5349 2.2369 41 1 7.7168 -1.1662 2.6245 42 1 7.3809 -4.0278 3.6322 43 1 6.4171 -3.2595 2.3478 44 1 3.6527 -0.1185 4.0703 45 1 2.8310 1.0424 2.0603 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607854_13421422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:32:36 Heat of formation + Delta-G solvation = -10.430683 kcal Electronic energy + Delta-G solvation = -31044.368299 eV Core-core repulsion = 26770.162222 eV Total energy + Delta-G solvation = -4274.206077 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.124 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.07183 -40.70496 -39.95482 -38.37022 -37.86752 -37.01237 -35.86903 -34.46842 -33.04806 -32.20563 -32.00526 -31.75491 -29.16777 -27.25030 -24.58623 -24.10423 -23.82562 -23.22430 -23.01224 -22.06785 -21.11491 -20.45372 -19.25957 -19.17097 -18.62146 -18.24683 -17.62220 -16.90108 -16.75648 -16.52400 -16.31991 -16.22459 -15.92914 -15.71885 -15.43907 -15.20383 -14.90838 -14.81073 -14.51402 -14.27044 -14.06332 -13.92709 -13.74558 -13.35535 -13.28833 -13.22514 -13.11613 -12.69471 -12.66700 -12.56346 -12.34288 -12.10057 -11.98418 -11.97278 -11.79010 -11.74972 -11.63564 -11.44106 -11.14747 -10.74674 -10.49394 -10.37279 -10.16565 -10.14160 -4.98629 -0.73330 -0.38115 0.18996 0.93905 1.21688 1.55377 1.89239 1.92604 1.93308 1.98240 2.33039 2.71207 3.21314 3.25158 3.30377 3.48852 3.62122 3.74363 3.77102 3.82674 3.90141 4.02241 4.18313 4.19439 4.25054 4.26222 4.34578 4.42647 4.43501 4.45785 4.50467 4.54211 4.61105 4.62842 4.84053 4.86028 4.94038 4.94460 4.98812 5.12975 5.14119 5.18239 5.24044 5.25089 5.28998 5.40392 5.49790 5.69941 6.06824 6.34290 6.37443 7.78566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.094 4.094 3 Si 0.774 3.226 4 C -0.062 4.062 5 C -0.122 4.122 6 C -0.027 4.027 7 C -0.677 4.677 8 S 2.707 3.293 9 O -0.976 6.976 10 O -0.993 6.993 11 N -1.101 6.101 12 C 0.148 3.852 13 H 0.102 0.898 14 C -0.139 4.139 15 C -0.110 4.110 16 C -0.001 4.001 17 H 0.101 0.899 18 C 0.195 3.805 19 N -0.348 5.348 20 N -0.358 5.358 21 C 0.169 3.831 22 N -0.566 5.566 23 C -0.104 4.104 24 C -0.119 4.119 25 C -0.022 4.022 26 C -0.140 4.140 27 H 0.388 0.612 28 H 0.133 0.867 29 H -0.305 1.305 30 H -0.277 1.277 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.429 0.571 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.261 0.739 39 H 0.447 0.553 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.163 0.837 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.178 4.670 -2.296 5.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.202 4.202 3 Si 0.679 3.321 4 C -0.062 4.062 5 C -0.141 4.141 6 C -0.047 4.047 7 C -0.765 4.765 8 S 2.798 3.202 9 O -0.966 6.966 10 O -0.984 6.984 11 N -0.862 5.862 12 C 0.042 3.958 13 H 0.119 0.881 14 C -0.179 4.179 15 C -0.149 4.149 16 C -0.022 4.022 17 H 0.119 0.881 18 C -0.076 4.076 19 N -0.188 5.188 20 N -0.196 5.196 21 C -0.121 4.121 22 N -0.181 5.181 23 C -0.143 4.143 24 C -0.158 4.158 25 C -0.041 4.041 26 C -0.158 4.158 27 H 0.237 0.763 28 H 0.151 0.849 29 H -0.233 1.233 30 H -0.204 1.204 31 H 0.158 0.842 32 H 0.164 0.836 33 H 0.266 0.734 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.276 0.724 39 H 0.291 0.709 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.105 0.895 44 H 0.181 0.819 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.597 4.348 -2.341 4.974 hybrid contribution -2.452 0.562 0.104 2.518 sum -1.855 4.909 -2.236 5.705 Atomic orbital electron populations 1.86610 1.18177 1.80396 1.50226 1.25450 0.83708 1.12420 0.98639 0.94090 0.89927 0.71496 0.76626 1.20757 0.94909 0.94663 0.95889 1.21330 1.00006 0.94492 0.98270 1.21125 0.91549 1.00559 0.91428 1.30859 1.16642 1.06923 1.22051 1.01275 0.72449 0.72673 0.73767 1.93574 1.85939 1.61349 1.55757 1.93571 1.67085 1.51594 1.86103 1.55369 1.24152 1.17809 1.88891 1.21052 0.86912 0.92301 0.95563 0.88057 1.22078 0.97194 1.00795 0.97805 1.21592 0.95510 0.99526 0.98268 1.19865 0.89091 0.95550 0.97698 0.88127 1.25200 0.96572 0.83962 1.01889 1.74189 1.02449 1.22311 1.19862 1.74192 1.28565 0.95914 1.20979 1.27273 0.81229 1.02943 1.00689 1.44048 1.13097 1.07363 1.53598 1.21524 0.96446 1.00983 0.95338 1.21807 0.95542 0.99343 0.99074 1.21190 0.94458 0.91679 0.96761 1.21436 0.99216 1.01121 0.94001 0.76305 0.84939 1.23308 1.20378 0.84165 0.83625 0.73388 0.90581 0.90492 0.91008 0.89347 0.72367 0.70891 0.91473 0.89828 0.90151 0.89480 0.81949 0.82529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.43 12.83 -148.98 -1.91 -1.49 16 2 C -0.09 0.47 2.80 71.24 0.20 0.67 16 3 Si 0.77 -5.02 29.88 68.60 2.05 -2.97 16 4 C -0.06 0.28 5.35 -19.86 -0.11 0.17 16 5 C -0.12 0.32 9.69 22.27 0.22 0.54 16 6 C -0.03 0.05 9.52 22.27 0.21 0.26 16 7 C -0.68 1.74 5.82 22.27 0.13 1.87 16 8 S 2.71 -1.39 5.65 -56.49 -0.32 -1.71 16 9 O -0.98 -3.96 16.54 -128.00 -2.12 -6.07 16 10 O -0.99 -6.92 17.28 -128.00 -2.21 -9.14 16 11 N -1.10 8.12 5.47 -169.39 -0.93 7.19 16 12 C 0.15 -1.46 2.65 44.99 0.12 -1.34 16 13 H 0.10 -1.32 7.25 -2.39 -0.02 -1.33 16 14 C -0.14 1.15 5.53 30.59 0.17 1.32 16 15 C -0.11 1.11 4.98 30.59 0.15 1.27 16 16 C 0.00 0.01 2.66 -11.54 -0.03 -0.02 16 17 H 0.10 -0.48 8.14 -2.38 -0.02 -0.50 16 18 C 0.19 -0.21 6.98 137.98 0.96 0.75 16 19 N -0.35 -3.15 12.21 -50.16 -0.61 -3.76 16 20 N -0.36 -3.06 12.21 -59.99 -0.73 -3.80 16 21 C 0.17 -0.52 13.19 180.11 2.37 1.86 16 22 N -0.57 4.15 5.96 -189.87 -1.13 3.02 16 23 C -0.10 0.99 5.19 30.59 0.16 1.15 16 24 C -0.12 1.32 5.45 30.59 0.17 1.48 16 25 C -0.02 0.12 8.92 22.27 0.20 0.32 16 26 C -0.14 0.90 8.67 22.27 0.19 1.09 16 27 H 0.39 -2.36 8.70 -74.06 -0.64 -3.00 16 28 H 0.13 -0.91 7.96 -2.39 -0.02 -0.93 16 29 H -0.30 -0.69 7.11 99.48 0.71 0.02 16 30 H -0.28 0.88 7.01 99.48 0.70 1.57 16 31 H 0.14 -0.55 8.06 -2.91 -0.02 -0.57 16 32 H 0.15 -0.46 7.62 -2.91 -0.02 -0.48 16 33 H 0.43 -4.35 8.84 -96.74 -0.85 -5.20 16 34 H 0.08 -0.40 7.64 -2.39 -0.02 -0.42 16 35 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H 0.07 -0.60 8.14 -2.39 -0.02 -0.62 16 37 H 0.09 -1.29 7.52 -2.39 -0.02 -1.31 16 38 H 0.26 -3.33 8.06 -2.91 -0.02 -3.36 16 39 H 0.45 -7.03 8.29 -92.71 -0.77 -7.80 16 40 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 41 H 0.08 -1.05 8.14 -2.38 -0.02 -1.07 16 42 H 0.08 -0.88 8.14 -2.39 -0.02 -0.89 16 43 H 0.09 -1.05 8.14 -2.38 -0.02 -1.07 16 44 H 0.16 -1.56 7.62 -2.91 -0.02 -1.58 16 45 H 0.16 -1.72 4.85 -2.91 -0.01 -1.74 16 Total: 0.00 -34.70 378.94 -3.98 -38.68 By element: Atomic # 1 Polarization: -30.16 SS G_CDS: -1.18 Total: -31.34 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 5.12 Total: 11.38 kcal Atomic # 7 Polarization: 6.06 SS G_CDS: -3.40 Total: 2.65 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -6.24 Total: -16.70 kcal Atomic # 14 Polarization: -5.02 SS G_CDS: 2.05 Total: -2.97 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -0.32 Total: -1.71 kcal Total: -34.70 -3.98 -38.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607854_13421422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.248 kcal (2) G-P(sol) polarization free energy of solvation -34.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds