Wall clock time and date at job start Mon Mar 8 2021 11:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86299 * 109.46894 * 2 1 4 4 C 1.50702 * 109.47293 * 240.00057 * 2 1 3 5 5 C 1.33384 * 122.54036 * 285.00301 * 4 2 1 6 6 S 1.76204 * 125.20337 * 359.97122 * 5 4 2 7 7 O 1.42100 * 106.40390 * 293.54681 * 6 5 4 8 8 O 1.42098 * 106.39941 * 66.46497 * 6 5 4 9 9 N 1.65593 * 107.22100 * 180.02562 * 6 5 4 10 10 C 1.46504 * 119.99835 * 65.00082 * 9 6 5 11 11 H 1.09000 * 109.47269 * 334.99715 * 10 9 6 12 12 C 1.53002 * 109.47175 * 95.00200 * 10 9 6 13 13 C 1.53002 * 109.47114 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46930 * 299.99668 * 13 12 10 15 15 H 1.08994 * 109.47321 * 300.00211 * 14 13 12 16 16 C 1.50705 * 109.47135 * 179.97438 * 14 13 12 17 17 N 1.30519 * 126.34564 * 145.02494 * 16 14 13 18 18 N 1.28596 * 109.67175 * 179.97438 * 17 16 14 19 19 C 1.30520 * 109.67254 * 359.97438 * 18 17 16 20 20 N 1.35495 * 107.31007 * 359.77783 * 19 18 17 21 21 C 1.53002 * 109.46951 * 60.00232 * 14 13 12 22 22 C 1.52998 * 109.47458 * 299.99691 * 21 14 13 23 23 S 1.75886 * 109.59693 * 179.97438 * 5 4 2 24 24 C 1.75891 * 90.96733 * 359.97438 * 23 5 4 25 25 C 1.33386 * 109.59176 * 0.23276 * 24 23 5 26 26 H 0.96698 * 113.99936 * 59.99949 * 1 2 3 27 27 H 1.08998 * 109.47160 * 119.99676 * 2 1 3 28 28 H 1.48504 * 110.00050 * 298.68016 * 3 2 1 29 29 H 1.48500 * 110.00042 * 60.00196 * 3 2 1 30 30 H 0.96994 * 120.00330 * 245.00198 * 9 6 5 31 31 H 1.09000 * 109.46548 * 300.00056 * 12 10 9 32 32 H 1.08994 * 109.47125 * 59.99903 * 12 10 9 33 33 H 1.09002 * 109.47060 * 179.97438 * 13 12 10 34 34 H 1.08994 * 109.47291 * 59.99897 * 13 12 10 35 35 H 1.08003 * 126.34674 * 180.02562 * 19 18 17 36 36 H 0.96999 * 126.98432 * 180.22672 * 20 19 18 37 37 H 1.09005 * 109.46869 * 179.97438 * 21 14 13 38 38 H 1.09000 * 109.47419 * 60.00157 * 21 14 13 39 39 H 1.09006 * 109.46808 * 300.00420 * 22 21 14 40 40 H 1.09002 * 109.47404 * 180.02562 * 22 21 14 41 41 H 1.08002 * 125.19914 * 179.97438 * 24 23 5 42 42 H 1.08001 * 122.53761 * 179.75296 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.8961 -2.0377 -1.3573 6 16 1.2763 -3.1577 -0.1464 7 8 2.1559 -3.0727 0.9665 8 8 -0.1207 -2.9149 -0.0531 9 7 1.4458 -4.6863 -0.7600 10 6 2.7826 -5.2314 -1.0096 11 1 3.4850 -4.4130 -1.1679 12 6 3.2288 -6.0603 0.1966 13 6 4.6251 -6.6290 -0.0638 14 6 4.5898 -7.5179 -1.3085 15 1 3.8877 -8.3365 -1.1506 16 6 5.9653 -8.0776 -1.5654 17 7 6.2424 -9.2597 -2.0442 18 7 7.5173 -9.4029 -2.1329 19 6 8.1113 -8.3184 -1.7151 20 7 7.1433 -7.4443 -1.3480 21 6 4.1437 -6.6890 -2.5147 22 6 2.7473 -6.1203 -2.2544 23 16 2.5630 -2.4992 -2.9180 24 6 2.8603 -0.8135 -3.3228 25 6 2.4676 -0.0351 -2.3133 26 1 -0.3933 0.4417 -0.7650 27 1 1.7923 -0.5138 0.8900 28 1 1.5878 2.4586 -1.2243 29 1 1.5614 2.4679 1.2085 30 1 0.6602 -5.2209 -0.9543 31 1 3.2543 -5.4269 1.0833 32 1 2.5265 -6.8787 0.3548 33 1 4.9431 -7.2192 0.7957 34 1 5.3272 -5.8104 -0.2217 35 1 9.1770 -8.1476 -1.6739 36 1 7.2682 -6.5482 -0.9985 37 1 4.1189 -7.3222 -3.4016 38 1 4.8458 -5.8703 -2.6727 39 1 2.0453 -6.9390 -2.0964 40 1 2.4293 -5.5301 -3.1139 41 1 3.2981 -0.4627 -4.2457 42 1 2.5589 1.0407 -2.3398 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607854_13652106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:32:42 Heat of formation + Delta-G solvation = 9.046513 kcal Electronic energy + Delta-G solvation = -29986.527052 eV Core-core repulsion = 25802.317816 eV Total energy + Delta-G solvation = -4184.209236 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.081 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -44.13741 -40.31140 -40.14516 -38.13951 -37.26198 -36.83809 -36.11664 -34.57364 -32.14904 -32.11448 -31.58219 -29.34984 -28.13076 -24.76364 -24.48409 -24.12723 -23.41447 -22.23980 -21.93682 -21.08435 -19.96959 -19.79013 -19.38784 -18.66825 -18.08797 -17.69833 -16.86349 -16.83755 -16.46394 -16.29717 -16.24518 -16.07991 -15.74563 -15.54467 -15.40129 -15.14866 -14.52177 -14.40165 -14.19458 -14.16152 -13.66783 -13.52473 -13.42438 -13.09147 -12.99968 -12.83776 -12.72857 -12.65799 -12.53414 -12.44980 -12.33583 -12.20844 -12.04597 -11.82732 -11.70114 -11.66932 -11.29172 -10.80851 -10.75856 -10.54271 -10.19604 -9.81249 -5.10371 -0.78697 -0.74469 0.08989 0.45691 0.79940 1.06744 1.09890 1.44162 1.74617 1.81761 1.84315 1.91481 2.57267 3.02929 3.18105 3.27813 3.33284 3.40414 3.50897 3.60995 3.75455 3.81412 3.87683 3.89815 3.91519 3.97393 4.07965 4.15906 4.19925 4.24078 4.31640 4.45477 4.50642 4.52272 4.63463 4.70561 4.79181 4.81216 4.88658 4.90322 4.92766 5.04879 5.12293 5.14860 5.72755 6.02171 6.26966 7.74900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.508 6.508 2 C -0.106 4.106 3 Si 0.710 3.290 4 C 0.008 3.992 5 C -0.767 4.767 6 S 2.714 3.286 7 O -0.943 6.943 8 O -0.930 6.930 9 N -1.115 6.115 10 C 0.147 3.853 11 H 0.085 0.915 12 C -0.137 4.137 13 C -0.117 4.117 14 C -0.005 4.005 15 H 0.112 0.888 16 C 0.186 3.814 17 N -0.291 5.291 18 N -0.296 5.296 19 C 0.154 3.846 20 N -0.581 5.581 21 C -0.109 4.109 22 C -0.126 4.126 23 S 0.203 5.797 24 C -0.163 4.163 25 C -0.163 4.163 26 H 0.379 0.621 27 H 0.128 0.872 28 H -0.253 1.253 29 H -0.247 1.247 30 H 0.424 0.576 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.222 0.778 36 H 0.429 0.571 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.179 0.821 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.408 4.482 -3.047 6.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.314 6.314 2 C -0.217 4.217 3 Si 0.608 3.392 4 C -0.009 4.009 5 C -0.967 4.967 6 S 2.798 3.202 7 O -0.933 6.933 8 O -0.919 6.919 9 N -0.876 5.876 10 C 0.040 3.960 11 H 0.103 0.897 12 C -0.176 4.176 13 C -0.156 4.156 14 C -0.026 4.026 15 H 0.130 0.870 16 C -0.083 4.083 17 N -0.131 5.131 18 N -0.135 5.135 19 C -0.135 4.135 20 N -0.194 5.194 21 C -0.149 4.149 22 C -0.165 4.165 23 S 0.469 5.531 24 C -0.300 4.300 25 C -0.193 4.193 26 H 0.227 0.773 27 H 0.145 0.855 28 H -0.178 1.178 29 H -0.172 1.172 30 H 0.259 0.741 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.239 0.761 36 H 0.269 0.731 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.196 0.804 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.159 2.396 -3.085 5.705 hybrid contribution -0.763 2.889 -0.082 2.989 sum 3.396 5.285 -3.167 7.035 Atomic orbital electron populations 1.86789 1.15580 1.79971 1.49064 1.25352 0.85603 1.13481 0.97253 0.94656 0.91026 0.72523 0.80959 1.18982 0.93982 0.91327 0.96634 1.35770 1.26088 1.14467 1.20341 1.01680 0.73871 0.71698 0.72985 1.93620 1.67784 1.85852 1.46045 1.93673 1.29473 1.83713 1.85081 1.55726 1.14316 1.32988 1.84531 1.20984 0.82066 0.97129 0.95858 0.89669 1.22065 0.96311 1.00679 0.98555 1.21635 0.97876 0.98812 0.97255 1.19808 0.87963 0.98789 0.96028 0.86983 1.24856 0.89828 0.91477 1.02118 1.74312 1.07265 1.14190 1.17349 1.74313 0.99792 1.21036 1.18383 1.26584 0.97627 0.87609 1.01676 1.44134 1.06859 1.17745 1.50684 1.21578 0.96273 0.99396 0.97615 1.21891 0.97793 0.99826 0.97008 1.84072 1.56290 1.06083 1.06611 1.26153 1.03621 0.96786 1.03429 1.20345 1.03473 1.02139 0.93329 0.77307 0.85467 1.17762 1.17167 0.74058 0.89408 0.90166 0.90321 0.91603 0.76133 0.73136 0.89971 0.91397 0.89919 0.90335 0.80366 0.82593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -1.26 12.30 -36.14 -0.44 -1.70 16 2 C -0.11 -0.09 2.33 36.01 0.08 0.00 16 3 Si 0.71 -1.04 30.45 -169.99 -5.18 -6.21 16 4 C 0.01 0.00 5.13 -106.25 -0.55 -0.54 16 5 C -0.77 -0.32 6.33 29.04 0.18 -0.14 16 6 S 2.71 4.63 4.98 -107.50 -0.54 4.09 16 7 O -0.94 -3.49 16.76 -57.17 -0.96 -4.45 16 8 O -0.93 -4.76 17.44 -59.58 -1.04 -5.80 16 9 N -1.11 2.24 5.29 -4.89 -0.03 2.22 16 10 C 0.15 -0.47 2.06 -67.93 -0.14 -0.61 16 11 H 0.09 -0.32 6.89 -51.93 -0.36 -0.67 16 12 C -0.14 0.40 5.53 -26.73 -0.15 0.25 16 13 C -0.12 0.44 4.98 -26.73 -0.13 0.31 16 14 C -0.01 0.01 2.66 -91.77 -0.24 -0.23 16 15 H 0.11 -0.28 8.14 -51.93 -0.42 -0.70 16 16 C 0.19 -0.03 6.98 -154.98 -1.08 -1.11 16 17 N -0.29 -1.20 12.21 32.80 0.40 -0.80 16 18 N -0.30 -1.20 12.21 29.69 0.36 -0.84 16 19 C 0.15 -0.12 13.19 -89.95 -1.19 -1.31 16 20 N -0.58 1.50 5.96 -11.36 -0.07 1.43 16 21 C -0.11 0.42 5.18 -26.73 -0.14 0.28 16 22 C -0.13 0.56 5.45 -26.73 -0.15 0.41 16 23 S 0.20 -0.48 21.58 -107.50 -2.32 -2.80 16 24 C -0.16 0.46 11.23 29.04 0.33 0.78 16 25 C -0.16 0.29 8.74 -41.21 -0.36 -0.07 16 26 H 0.38 -0.42 8.70 45.56 0.40 -0.02 16 27 H 0.13 0.15 7.24 -51.93 -0.38 -0.23 16 28 H -0.25 0.18 6.81 56.52 0.38 0.57 16 29 H -0.25 -0.41 7.11 56.52 0.40 0.00 16 30 H 0.42 -1.61 8.84 -34.47 -0.30 -1.92 16 31 H 0.09 -0.12 7.64 -51.93 -0.40 -0.52 16 32 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 33 H 0.08 -0.26 8.14 -51.93 -0.42 -0.69 16 34 H 0.07 -0.34 7.52 -51.93 -0.39 -0.73 16 35 H 0.22 -1.12 8.06 -52.48 -0.42 -1.54 16 36 H 0.43 -2.61 8.29 -40.82 -0.34 -2.95 16 37 H 0.08 -0.23 8.14 -51.93 -0.42 -0.66 16 38 H 0.07 -0.31 8.14 -51.93 -0.42 -0.73 16 39 H 0.08 -0.40 8.14 -51.93 -0.42 -0.82 16 40 H 0.08 -0.38 8.14 -51.93 -0.42 -0.81 16 41 H 0.18 -0.98 8.06 -52.49 -0.42 -1.40 16 42 H 0.16 -0.55 5.53 -52.49 -0.29 -0.84 16 LS Contribution 366.64 15.07 5.53 5.53 Total: 0.00 -13.79 366.64 -12.88 -26.67 By element: Atomic # 1 Polarization: -10.29 SS G_CDS: -5.08 Total: -15.37 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -3.53 Total: -1.98 kcal Atomic # 7 Polarization: 1.34 SS G_CDS: 0.67 Total: 2.01 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -2.44 Total: -11.95 kcal Atomic # 14 Polarization: -1.04 SS G_CDS: -5.18 Total: -6.21 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -2.85 Total: 1.30 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -13.79 -12.88 -26.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607854_13652106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.721 kcal (2) G-P(sol) polarization free energy of solvation -13.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds