Wall clock time and date at job start Mon Mar 8 2021 11:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86299 * 109.46894 * 2 1 4 4 C 1.50702 * 109.47293 * 240.00057 * 2 1 3 5 5 C 1.33384 * 122.54036 * 285.00301 * 4 2 1 6 6 S 1.76204 * 125.20337 * 359.97122 * 5 4 2 7 7 O 1.42100 * 106.40390 * 293.54681 * 6 5 4 8 8 O 1.42098 * 106.39941 * 66.46497 * 6 5 4 9 9 N 1.65593 * 107.22100 * 180.02562 * 6 5 4 10 10 C 1.46504 * 119.99835 * 65.00082 * 9 6 5 11 11 H 1.09000 * 109.47269 * 334.99715 * 10 9 6 12 12 C 1.53002 * 109.47175 * 95.00200 * 10 9 6 13 13 C 1.53002 * 109.47114 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46930 * 299.99668 * 13 12 10 15 15 H 1.08994 * 109.47321 * 300.00211 * 14 13 12 16 16 C 1.50705 * 109.47135 * 179.97438 * 14 13 12 17 17 N 1.30519 * 126.34564 * 145.02494 * 16 14 13 18 18 N 1.28596 * 109.67175 * 179.97438 * 17 16 14 19 19 C 1.30520 * 109.67254 * 359.97438 * 18 17 16 20 20 N 1.35495 * 107.31007 * 359.77783 * 19 18 17 21 21 C 1.53002 * 109.46951 * 60.00232 * 14 13 12 22 22 C 1.52998 * 109.47458 * 299.99691 * 21 14 13 23 23 S 1.75886 * 109.59693 * 179.97438 * 5 4 2 24 24 C 1.75891 * 90.96733 * 359.97438 * 23 5 4 25 25 C 1.33386 * 109.59176 * 0.23276 * 24 23 5 26 26 H 0.96698 * 113.99936 * 59.99949 * 1 2 3 27 27 H 1.08998 * 109.47160 * 119.99676 * 2 1 3 28 28 H 1.48504 * 110.00050 * 298.68016 * 3 2 1 29 29 H 1.48500 * 110.00042 * 60.00196 * 3 2 1 30 30 H 0.96994 * 120.00330 * 245.00198 * 9 6 5 31 31 H 1.09000 * 109.46548 * 300.00056 * 12 10 9 32 32 H 1.08994 * 109.47125 * 59.99903 * 12 10 9 33 33 H 1.09002 * 109.47060 * 179.97438 * 13 12 10 34 34 H 1.08994 * 109.47291 * 59.99897 * 13 12 10 35 35 H 1.08003 * 126.34674 * 180.02562 * 19 18 17 36 36 H 0.96999 * 126.98432 * 180.22672 * 20 19 18 37 37 H 1.09005 * 109.46869 * 179.97438 * 21 14 13 38 38 H 1.09000 * 109.47419 * 60.00157 * 21 14 13 39 39 H 1.09006 * 109.46808 * 300.00420 * 22 21 14 40 40 H 1.09002 * 109.47404 * 180.02562 * 22 21 14 41 41 H 1.08002 * 125.19914 * 179.97438 * 24 23 5 42 42 H 1.08001 * 122.53761 * 179.75296 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.8961 -2.0377 -1.3573 6 16 1.2763 -3.1577 -0.1464 7 8 2.1559 -3.0727 0.9665 8 8 -0.1207 -2.9149 -0.0531 9 7 1.4458 -4.6863 -0.7600 10 6 2.7826 -5.2314 -1.0096 11 1 3.4850 -4.4130 -1.1679 12 6 3.2288 -6.0603 0.1966 13 6 4.6251 -6.6290 -0.0638 14 6 4.5898 -7.5179 -1.3085 15 1 3.8877 -8.3365 -1.1506 16 6 5.9653 -8.0776 -1.5654 17 7 6.2424 -9.2597 -2.0442 18 7 7.5173 -9.4029 -2.1329 19 6 8.1113 -8.3184 -1.7151 20 7 7.1433 -7.4443 -1.3480 21 6 4.1437 -6.6890 -2.5147 22 6 2.7473 -6.1203 -2.2544 23 16 2.5630 -2.4992 -2.9180 24 6 2.8603 -0.8135 -3.3228 25 6 2.4676 -0.0351 -2.3133 26 1 -0.3933 0.4417 -0.7650 27 1 1.7923 -0.5138 0.8900 28 1 1.5878 2.4586 -1.2243 29 1 1.5614 2.4679 1.2085 30 1 0.6602 -5.2209 -0.9543 31 1 3.2543 -5.4269 1.0833 32 1 2.5265 -6.8787 0.3548 33 1 4.9431 -7.2192 0.7957 34 1 5.3272 -5.8104 -0.2217 35 1 9.1770 -8.1476 -1.6739 36 1 7.2682 -6.5482 -0.9985 37 1 4.1189 -7.3222 -3.4016 38 1 4.8458 -5.8703 -2.6727 39 1 2.0453 -6.9390 -2.0964 40 1 2.4293 -5.5301 -3.1139 41 1 3.2981 -0.4627 -4.2457 42 1 2.5589 1.0407 -2.3398 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607854_13652106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:32:41 Heat of formation + Delta-G solvation = 2.349298 kcal Electronic energy + Delta-G solvation = -29986.817465 eV Core-core repulsion = 25802.317816 eV Total energy + Delta-G solvation = -4184.499649 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.081 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.10107 -40.15354 -40.00070 -38.33865 -37.28711 -37.04029 -35.99383 -34.50969 -32.08129 -31.84401 -31.44560 -29.24684 -28.10888 -24.63034 -24.36241 -23.90271 -23.28990 -22.13412 -21.86003 -20.89224 -19.95627 -19.71119 -19.24728 -18.71337 -18.03215 -17.63430 -16.85511 -16.80375 -16.41081 -16.27501 -16.22814 -15.96410 -15.65673 -15.31207 -15.28201 -14.94307 -14.37164 -14.24357 -14.05962 -14.03272 -13.62453 -13.46006 -13.32719 -13.27625 -13.17668 -12.79540 -12.72806 -12.56645 -12.39299 -12.36563 -12.15726 -12.04847 -11.83463 -11.75624 -11.61921 -11.50972 -11.21089 -10.80917 -10.60233 -10.40515 -10.19807 -9.62143 -4.99554 -0.81181 -0.66847 0.21831 0.65622 0.90821 1.13854 1.25290 1.52900 1.84585 1.89721 1.90665 1.95059 2.50546 3.18991 3.20336 3.42326 3.50015 3.53842 3.67397 3.81960 3.95952 3.99917 4.09948 4.14083 4.14920 4.20800 4.29389 4.34624 4.39771 4.45932 4.48993 4.57365 4.70313 4.78606 4.85973 4.89342 5.07410 5.07518 5.08771 5.11966 5.17033 5.22097 5.32605 5.41856 5.93569 6.30189 6.35164 7.75623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.134 4.134 3 Si 0.802 3.198 4 C 0.001 3.999 5 C -0.796 4.796 6 S 2.721 3.279 7 O -0.974 6.974 8 O -0.975 6.975 9 N -1.104 6.104 10 C 0.142 3.858 11 H 0.094 0.906 12 C -0.139 4.139 13 C -0.110 4.110 14 C -0.001 4.001 15 H 0.105 0.895 16 C 0.194 3.806 17 N -0.345 5.345 18 N -0.357 5.357 19 C 0.169 3.831 20 N -0.568 5.568 21 C -0.104 4.104 22 C -0.121 4.121 23 S 0.238 5.762 24 C -0.152 4.152 25 C -0.175 4.175 26 H 0.390 0.610 27 H 0.112 0.888 28 H -0.252 1.252 29 H -0.297 1.297 30 H 0.432 0.568 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.261 0.739 36 H 0.447 0.553 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.211 0.789 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.917 5.819 -4.853 9.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.242 4.242 3 Si 0.702 3.298 4 C -0.017 4.017 5 C -0.998 4.998 6 S 2.809 3.191 7 O -0.964 6.964 8 O -0.965 6.965 9 N -0.867 5.867 10 C 0.036 3.964 11 H 0.112 0.888 12 C -0.178 4.178 13 C -0.149 4.149 14 C -0.022 4.022 15 H 0.123 0.877 16 C -0.077 4.077 17 N -0.185 5.185 18 N -0.195 5.195 19 C -0.121 4.121 20 N -0.182 5.182 21 C -0.143 4.143 22 C -0.160 4.160 23 S 0.505 5.495 24 C -0.289 4.289 25 C -0.204 4.204 26 H 0.240 0.760 27 H 0.130 0.870 28 H -0.177 1.177 29 H -0.224 1.224 30 H 0.270 0.730 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.276 0.724 36 H 0.290 0.710 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.228 0.772 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.652 3.690 -4.887 8.333 hybrid contribution -1.204 2.456 0.482 2.777 sum 4.448 6.146 -4.406 8.773 Atomic orbital electron populations 1.86741 1.16916 1.80725 1.50064 1.25796 0.84960 1.16029 0.97411 0.93649 0.89400 0.68779 0.77999 1.19099 0.94212 0.91440 0.96942 1.35498 1.27983 1.14458 1.21846 1.00952 0.72648 0.72376 0.73169 1.93574 1.67988 1.86546 1.48252 1.93609 1.32005 1.84744 1.86102 1.55441 1.15380 1.31682 1.84244 1.21169 0.81376 0.97546 0.96303 0.88836 1.22058 0.97080 1.00551 0.98096 1.21590 0.97684 0.99071 0.96592 1.19858 0.86548 0.98831 0.96938 0.87710 1.25167 0.91169 0.90691 1.00645 1.74192 1.07856 1.16624 1.19845 1.74195 1.00254 1.23806 1.21258 1.27276 0.99163 0.86457 0.99208 1.44069 1.05782 1.18341 1.50023 1.21539 0.96789 0.99427 0.96589 1.21872 0.97703 0.99837 0.96601 1.83886 1.55011 1.06444 1.04205 1.26628 1.01983 0.96238 1.04056 1.20472 1.03894 1.03189 0.92877 0.75991 0.87027 1.17697 1.22446 0.73031 0.91010 0.89936 0.90699 0.89727 0.72361 0.70982 0.90789 0.89975 0.89416 0.89213 0.77175 0.80766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -3.76 12.30 -148.11 -1.82 -5.58 16 2 C -0.13 -0.40 2.33 71.24 0.17 -0.24 16 3 Si 0.80 -2.33 30.45 68.60 2.09 -0.24 16 4 C 0.00 0.00 5.13 -20.92 -0.11 -0.11 16 5 C -0.80 -0.85 6.33 66.72 0.42 -0.43 16 6 S 2.72 13.71 4.98 -56.49 -0.28 13.43 16 7 O -0.97 -9.31 16.76 -128.00 -2.14 -11.45 16 8 O -0.97 -12.45 17.44 -125.70 -2.19 -14.64 16 9 N -1.10 3.78 5.29 -169.37 -0.90 2.88 16 10 C 0.14 -0.96 2.06 44.99 0.09 -0.87 16 11 H 0.09 -0.78 6.89 -2.39 -0.02 -0.80 16 12 C -0.14 0.78 5.53 30.60 0.17 0.95 16 13 C -0.11 0.90 4.98 30.59 0.15 1.05 16 14 C 0.00 0.00 2.66 -11.54 -0.03 -0.03 16 15 H 0.10 -0.45 8.14 -2.39 -0.02 -0.47 16 16 C 0.19 -0.06 6.98 137.98 0.96 0.90 16 17 N -0.35 -3.24 12.21 -50.15 -0.61 -3.86 16 18 N -0.36 -3.20 12.21 -59.99 -0.73 -3.93 16 19 C 0.17 -0.40 13.19 180.11 2.37 1.97 16 20 N -0.57 3.56 5.96 -189.85 -1.13 2.42 16 21 C -0.10 0.91 5.18 30.59 0.16 1.07 16 22 C -0.12 1.19 5.45 30.59 0.17 1.35 16 23 S 0.24 -1.52 21.58 -56.49 -1.22 -2.74 16 24 C -0.15 1.27 11.23 66.72 0.75 2.02 16 25 C -0.18 0.93 8.74 21.22 0.19 1.12 16 26 H 0.39 -0.25 8.70 -74.06 -0.64 -0.90 16 27 H 0.11 0.57 7.24 -2.39 -0.02 0.55 16 28 H -0.25 0.79 6.81 99.48 0.68 1.46 16 29 H -0.30 -1.48 7.11 99.48 0.71 -0.77 16 30 H 0.43 -2.99 8.84 -96.75 -0.86 -3.84 16 31 H 0.07 -0.12 7.64 -2.39 -0.02 -0.14 16 32 H 0.08 -0.52 8.14 -2.39 -0.02 -0.53 16 33 H 0.07 -0.51 8.14 -2.39 -0.02 -0.53 16 34 H 0.08 -1.00 7.52 -2.39 -0.02 -1.02 16 35 H 0.26 -3.16 8.06 -2.91 -0.02 -3.18 16 36 H 0.45 -6.34 8.29 -92.71 -0.77 -7.11 16 37 H 0.07 -0.46 8.14 -2.38 -0.02 -0.48 16 38 H 0.08 -0.93 8.14 -2.39 -0.02 -0.95 16 39 H 0.09 -0.91 8.14 -2.38 -0.02 -0.93 16 40 H 0.09 -1.03 8.14 -2.39 -0.02 -1.05 16 41 H 0.21 -3.19 8.06 -2.91 -0.02 -3.21 16 42 H 0.18 -1.66 5.53 -2.91 -0.02 -1.68 16 Total: 0.00 -35.91 366.64 -4.63 -40.54 By element: Atomic # 1 Polarization: -24.44 SS G_CDS: -1.15 Total: -25.59 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 5.46 Total: 8.75 kcal Atomic # 7 Polarization: 0.90 SS G_CDS: -3.37 Total: -2.48 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -6.16 Total: -31.67 kcal Atomic # 14 Polarization: -2.33 SS G_CDS: 2.09 Total: -0.24 kcal Atomic # 16 Polarization: 12.19 SS G_CDS: -1.50 Total: 10.69 kcal Total: -35.91 -4.63 -40.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607854_13652106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.891 kcal (2) G-P(sol) polarization free energy of solvation -35.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds