Wall clock time and date at job start Mon Mar 8 2021 11:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86298 * 109.46929 * 2 1 4 4 C 1.50692 * 109.46755 * 120.00087 * 2 1 3 5 5 C 1.33386 * 125.20817 * 65.92585 * 4 2 1 6 6 S 1.76205 * 122.53838 * 0.02562 * 5 4 2 7 7 O 1.42109 * 106.40046 * 314.75380 * 6 5 4 8 8 O 1.42094 * 106.40688 * 181.83460 * 6 5 4 9 9 N 1.65602 * 107.21886 * 68.29096 * 6 5 4 10 10 C 1.46504 * 120.00057 * 64.14045 * 9 6 5 11 11 H 1.09007 * 109.46796 * 21.20168 * 10 9 6 12 12 C 1.52996 * 109.47031 * 141.20171 * 10 9 6 13 13 C 1.52996 * 109.46821 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47289 * 299.99930 * 13 12 10 15 15 H 1.08998 * 109.47343 * 300.00163 * 14 13 12 16 16 C 1.50704 * 109.47269 * 180.02562 * 14 13 12 17 17 N 1.30516 * 126.34341 * 94.68767 * 16 14 13 18 18 N 1.28601 * 109.67047 * 179.82702 * 17 16 14 19 19 C 1.30516 * 109.67450 * 0.44786 * 18 17 16 20 20 N 1.35495 * 126.34596 * 275.00364 * 16 14 13 21 21 C 1.53004 * 109.46754 * 60.00515 * 14 13 12 22 22 C 1.53001 * 109.47036 * 261.20847 * 10 9 6 23 23 C 1.38428 * 114.92736 * 180.28659 * 5 4 2 24 24 C 1.33389 * 114.91268 * 359.49661 * 23 5 4 25 25 S 1.75884 * 125.20181 * 245.94718 * 4 2 1 26 26 H 0.96695 * 114.00310 * 292.48191 * 1 2 3 27 27 H 1.09004 * 109.46622 * 239.99869 * 2 1 3 28 28 H 1.48503 * 110.00274 * 303.98766 * 3 2 1 29 29 H 1.48494 * 109.99984 * 65.31142 * 3 2 1 30 30 H 0.96996 * 120.00185 * 244.14731 * 9 6 5 31 31 H 1.08998 * 109.47086 * 60.00515 * 12 10 9 32 32 H 1.08993 * 109.47424 * 300.00183 * 12 10 9 33 33 H 1.08998 * 109.47803 * 60.00303 * 13 12 10 34 34 H 1.09004 * 109.47097 * 180.02562 * 13 12 10 35 35 H 1.07998 * 126.35203 * 179.72996 * 19 18 17 36 36 H 0.97000 * 126.98168 * 359.97438 * 20 16 14 37 37 H 1.09002 * 109.46851 * 180.02562 * 21 14 13 38 38 H 1.08998 * 109.47483 * 59.99734 * 21 14 13 39 39 H 1.08998 * 109.47051 * 299.99467 * 22 10 9 40 40 H 1.08990 * 109.47664 * 59.99837 * 22 10 9 41 41 H 1.07993 * 122.54016 * 179.72900 * 23 5 4 42 42 H 1.08003 * 125.19941 * 180.21308 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9312 -0.7104 1.2304 5 6 1.7684 -2.0088 1.4891 6 16 0.9194 -3.0946 0.3914 7 8 -0.2636 -2.4164 -0.0086 8 8 0.9099 -4.3706 1.0167 9 7 1.8534 -3.2467 -0.9675 10 6 3.1786 -3.8653 -0.8801 11 1 3.2325 -4.4837 0.0159 12 6 3.4176 -4.7356 -2.1156 13 6 4.8012 -5.3820 -2.0240 14 6 5.8708 -4.2901 -1.9546 15 1 5.8174 -3.6717 -2.8505 16 6 7.2338 -4.9270 -1.8650 17 7 8.0380 -5.1765 -2.8622 18 7 9.1169 -5.7209 -2.4224 19 6 9.0460 -5.8520 -1.1258 20 7 7.8488 -5.3519 -0.7349 21 6 5.6317 -3.4199 -0.7190 22 6 4.2477 -2.7730 -0.8109 23 6 2.3119 -2.4375 2.6879 24 6 2.9254 -1.4893 3.3977 25 16 2.8214 0.0458 2.5454 26 1 -0.3933 0.3378 0.8162 27 1 1.7923 -0.5139 -0.8900 28 1 1.4838 2.4954 -1.1570 29 1 1.6697 2.4295 1.2678 30 1 1.5232 -2.9261 -1.8214 31 1 3.3638 -4.1172 -3.0115 32 1 2.6560 -5.5136 -2.1648 33 1 4.8548 -6.0006 -1.1281 34 1 4.9718 -6.0017 -2.9044 35 1 9.8014 -6.2798 -0.4834 36 1 7.5026 -5.3069 0.1701 37 1 6.3934 -2.6418 -0.6698 38 1 5.6852 -4.0384 0.1769 39 1 4.1939 -2.1546 -1.7069 40 1 4.0774 -2.1531 0.0692 41 1 2.2476 -3.4627 3.0212 42 1 3.4081 -1.6401 4.3520 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607854_14772022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:32:47 Heat of formation + Delta-G solvation = 9.541107 kcal Electronic energy + Delta-G solvation = -30521.044691 eV Core-core repulsion = 26336.856902 eV Total energy + Delta-G solvation = -4184.187789 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.081 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -44.13667 -40.26639 -39.68962 -38.26810 -37.45777 -36.76562 -36.04295 -34.56573 -32.15570 -32.13566 -31.85709 -29.31923 -27.55675 -24.75263 -24.52997 -24.10070 -23.38671 -22.21824 -21.87308 -21.32341 -20.12732 -19.40810 -19.32669 -18.65442 -18.20168 -17.45560 -17.04066 -16.83498 -16.52264 -16.35443 -16.11387 -15.93378 -15.63203 -15.53347 -15.21479 -15.08170 -14.47707 -14.30238 -14.24799 -14.05795 -13.95262 -13.49253 -13.30355 -13.08152 -12.95815 -12.94114 -12.74583 -12.68400 -12.51186 -12.46780 -12.24134 -12.17512 -12.01225 -11.82933 -11.67634 -11.59940 -11.30214 -10.88933 -10.62926 -10.33107 -10.19236 -9.97720 -5.24946 -0.78863 -0.58108 0.21876 0.47649 0.79968 0.93057 1.00651 1.36319 1.74771 1.75678 1.91689 1.97112 2.70546 2.97379 3.03009 3.29785 3.33150 3.39218 3.44780 3.63197 3.74163 3.85481 3.90538 3.95633 4.03178 4.05693 4.10111 4.15516 4.17086 4.23250 4.33238 4.44655 4.51048 4.57281 4.66026 4.73732 4.76473 4.83077 4.89189 4.94370 4.98724 5.05377 5.10421 5.17223 5.82291 6.01869 6.23676 7.74992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.486 6.486 2 C -0.066 4.066 3 Si 0.652 3.348 4 C -0.102 4.102 5 C -0.660 4.660 6 S 2.698 3.302 7 O -0.925 6.925 8 O -0.956 6.956 9 N -1.112 6.112 10 C 0.148 3.852 11 H 0.094 0.906 12 C -0.122 4.122 13 C -0.110 4.110 14 C -0.004 4.004 15 H 0.112 0.888 16 C 0.186 3.814 17 N -0.290 5.290 18 N -0.296 5.296 19 C 0.154 3.846 20 N -0.581 5.581 21 C -0.116 4.116 22 C -0.139 4.139 23 C -0.077 4.077 24 C -0.211 4.211 25 S 0.158 5.842 26 H 0.378 0.622 27 H 0.131 0.869 28 H -0.228 1.228 29 H -0.236 1.236 30 H 0.421 0.579 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.222 0.778 36 H 0.428 0.572 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.157 0.843 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.454 2.498 4.463 6.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.291 6.291 2 C -0.178 4.178 3 Si 0.549 3.451 4 C -0.223 4.223 5 C -0.760 4.760 6 S 2.784 3.216 7 O -0.914 6.914 8 O -0.946 6.946 9 N -0.871 5.871 10 C 0.041 3.959 11 H 0.112 0.888 12 C -0.161 4.161 13 C -0.150 4.150 14 C -0.025 4.025 15 H 0.130 0.870 16 C -0.083 4.083 17 N -0.131 5.131 18 N -0.135 5.135 19 C -0.135 4.135 20 N -0.194 5.194 21 C -0.155 4.155 22 C -0.178 4.178 23 C -0.105 4.105 24 C -0.347 4.347 25 S 0.422 5.578 26 H 0.226 0.774 27 H 0.149 0.851 28 H -0.151 1.151 29 H -0.160 1.160 30 H 0.256 0.744 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.238 0.762 36 H 0.268 0.732 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.175 0.825 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.745 4.033 3.029 6.282 hybrid contribution -1.464 -1.083 2.363 2.984 sum 2.281 2.950 5.393 6.556 Atomic orbital electron populations 1.86902 1.14215 1.85834 1.42196 1.24891 0.86272 1.11226 0.95444 0.95480 0.91583 0.74381 0.83668 1.25030 1.00379 0.96191 1.00663 1.30010 1.21553 1.09325 1.15090 1.02039 0.73117 0.73659 0.72818 1.93726 1.41823 1.74836 1.81057 1.93593 1.85992 1.38810 1.76246 1.55677 1.30142 1.75927 1.25359 1.20920 0.80784 0.93638 1.00607 0.88838 1.21807 0.97061 0.99642 0.97601 1.21589 0.92750 0.97012 1.03606 1.19796 0.85152 0.96254 1.01265 0.87019 1.24874 0.98654 1.02064 0.82700 1.74312 0.98862 1.15065 1.24851 1.74313 1.16088 1.15677 1.07427 1.26581 0.89459 1.02315 0.95163 1.44133 1.16267 1.47454 1.11596 1.21619 0.97792 0.99289 0.96766 1.22110 0.93450 0.98334 1.03943 1.19765 0.97073 1.01583 0.92058 1.25939 1.07866 0.95564 1.05296 1.84542 1.50109 1.11368 1.11744 0.77399 0.85144 1.15083 1.16031 0.74382 0.90297 0.90126 0.91408 0.90099 0.76157 0.73193 0.90432 0.91690 0.89991 0.90699 0.82513 0.80796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.49 -0.34 10.19 -58.08 -0.59 -0.93 16 2 C -0.07 0.12 2.22 36.00 0.08 0.20 16 3 Si 0.65 -1.54 31.10 -169.99 -5.29 -6.83 16 4 C -0.10 0.16 5.40 -36.01 -0.19 -0.03 16 5 C -0.66 0.51 5.03 -41.21 -0.21 0.30 16 6 S 2.70 1.82 5.35 -107.50 -0.58 1.25 16 7 O -0.92 -3.38 14.98 -66.54 -1.00 -4.38 16 8 O -0.96 -3.43 16.73 -57.17 -0.96 -4.39 16 9 N -1.11 3.09 5.38 -4.89 -0.03 3.07 16 10 C 0.15 -0.56 2.79 -67.93 -0.19 -0.75 16 11 H 0.09 -0.32 7.52 -51.93 -0.39 -0.71 16 12 C -0.12 0.48 5.48 -26.74 -0.15 0.34 16 13 C -0.11 0.38 5.19 -26.73 -0.14 0.24 16 14 C 0.00 0.01 2.66 -91.77 -0.24 -0.23 16 15 H 0.11 -0.34 8.14 -51.93 -0.42 -0.77 16 16 C 0.19 -0.07 6.99 -154.99 -1.08 -1.16 16 17 N -0.29 -1.14 12.21 32.80 0.40 -0.74 16 18 N -0.30 -1.17 12.21 29.69 0.36 -0.81 16 19 C 0.15 -0.14 13.19 -89.94 -1.19 -1.32 16 20 N -0.58 1.60 5.96 -11.36 -0.07 1.54 16 21 C -0.12 0.59 4.98 -26.70 -0.13 0.46 16 22 C -0.14 0.71 5.53 -26.70 -0.15 0.56 16 23 C -0.08 0.10 9.70 -41.21 -0.40 -0.30 16 24 C -0.21 0.51 11.23 29.04 0.33 0.84 16 25 S 0.16 -0.38 20.60 -107.50 -2.21 -2.60 16 26 H 0.38 -0.64 8.78 45.56 0.40 -0.24 16 27 H 0.13 -0.48 7.90 -51.93 -0.41 -0.89 16 28 H -0.23 -0.12 7.11 56.52 0.40 0.28 16 29 H -0.24 0.15 7.11 56.52 0.40 0.55 16 30 H 0.42 -1.84 8.88 -34.47 -0.31 -2.14 16 31 H 0.08 -0.37 8.14 -51.93 -0.42 -0.80 16 32 H 0.08 -0.26 8.14 -51.93 -0.42 -0.69 16 33 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 34 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 35 H 0.22 -1.13 8.06 -52.49 -0.42 -1.56 16 36 H 0.43 -2.69 8.29 -40.82 -0.34 -3.03 16 37 H 0.08 -0.38 8.14 -51.93 -0.42 -0.81 16 38 H 0.06 -0.40 7.52 -51.93 -0.39 -0.79 16 39 H 0.08 -0.48 8.14 -51.93 -0.42 -0.90 16 40 H 0.07 -0.39 7.12 -51.93 -0.37 -0.76 16 41 H 0.16 -0.28 7.74 -52.49 -0.41 -0.68 16 42 H 0.17 -0.78 8.06 -52.48 -0.42 -1.20 16 LS Contribution 366.13 15.07 5.52 5.52 Total: 0.00 -13.24 366.13 -13.31 -26.55 By element: Atomic # 1 Polarization: -11.17 SS G_CDS: -5.21 Total: -16.38 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -3.66 Total: -0.86 kcal Atomic # 7 Polarization: 2.38 SS G_CDS: 0.67 Total: 3.05 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -2.55 Total: -9.70 kcal Atomic # 14 Polarization: -1.54 SS G_CDS: -5.29 Total: -6.83 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.79 Total: -1.35 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -13.24 -13.31 -26.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607854_14772022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.089 kcal (2) G-P(sol) polarization free energy of solvation -13.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds