Wall clock time and date at job start Mon Mar 8 2021 11:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86298 * 109.46929 * 2 1 4 4 C 1.50692 * 109.46755 * 120.00087 * 2 1 3 5 5 C 1.33386 * 125.20817 * 65.92585 * 4 2 1 6 6 S 1.76205 * 122.53838 * 0.02562 * 5 4 2 7 7 O 1.42109 * 106.40046 * 314.75380 * 6 5 4 8 8 O 1.42094 * 106.40688 * 181.83460 * 6 5 4 9 9 N 1.65602 * 107.21886 * 68.29096 * 6 5 4 10 10 C 1.46504 * 120.00057 * 64.14045 * 9 6 5 11 11 H 1.09007 * 109.46796 * 21.20168 * 10 9 6 12 12 C 1.52996 * 109.47031 * 141.20171 * 10 9 6 13 13 C 1.52996 * 109.46821 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47289 * 299.99930 * 13 12 10 15 15 H 1.08998 * 109.47343 * 300.00163 * 14 13 12 16 16 C 1.50704 * 109.47269 * 180.02562 * 14 13 12 17 17 N 1.30516 * 126.34341 * 94.68767 * 16 14 13 18 18 N 1.28601 * 109.67047 * 179.82702 * 17 16 14 19 19 C 1.30516 * 109.67450 * 0.44786 * 18 17 16 20 20 N 1.35495 * 126.34596 * 275.00364 * 16 14 13 21 21 C 1.53004 * 109.46754 * 60.00515 * 14 13 12 22 22 C 1.53001 * 109.47036 * 261.20847 * 10 9 6 23 23 C 1.38428 * 114.92736 * 180.28659 * 5 4 2 24 24 C 1.33389 * 114.91268 * 359.49661 * 23 5 4 25 25 S 1.75884 * 125.20181 * 245.94718 * 4 2 1 26 26 H 0.96695 * 114.00310 * 292.48191 * 1 2 3 27 27 H 1.09004 * 109.46622 * 239.99869 * 2 1 3 28 28 H 1.48503 * 110.00274 * 303.98766 * 3 2 1 29 29 H 1.48494 * 109.99984 * 65.31142 * 3 2 1 30 30 H 0.96996 * 120.00185 * 244.14731 * 9 6 5 31 31 H 1.08998 * 109.47086 * 60.00515 * 12 10 9 32 32 H 1.08993 * 109.47424 * 300.00183 * 12 10 9 33 33 H 1.08998 * 109.47803 * 60.00303 * 13 12 10 34 34 H 1.09004 * 109.47097 * 180.02562 * 13 12 10 35 35 H 1.07998 * 126.35203 * 179.72996 * 19 18 17 36 36 H 0.97000 * 126.98168 * 359.97438 * 20 16 14 37 37 H 1.09002 * 109.46851 * 180.02562 * 21 14 13 38 38 H 1.08998 * 109.47483 * 59.99734 * 21 14 13 39 39 H 1.08998 * 109.47051 * 299.99467 * 22 10 9 40 40 H 1.08990 * 109.47664 * 59.99837 * 22 10 9 41 41 H 1.07993 * 122.54016 * 179.72900 * 23 5 4 42 42 H 1.08003 * 125.19941 * 180.21308 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9312 -0.7104 1.2304 5 6 1.7684 -2.0088 1.4891 6 16 0.9194 -3.0946 0.3914 7 8 -0.2636 -2.4164 -0.0086 8 8 0.9099 -4.3706 1.0167 9 7 1.8534 -3.2467 -0.9675 10 6 3.1786 -3.8653 -0.8801 11 1 3.2325 -4.4837 0.0159 12 6 3.4176 -4.7356 -2.1156 13 6 4.8012 -5.3820 -2.0240 14 6 5.8708 -4.2901 -1.9546 15 1 5.8174 -3.6717 -2.8505 16 6 7.2338 -4.9270 -1.8650 17 7 8.0380 -5.1765 -2.8622 18 7 9.1169 -5.7209 -2.4224 19 6 9.0460 -5.8520 -1.1258 20 7 7.8488 -5.3519 -0.7349 21 6 5.6317 -3.4199 -0.7190 22 6 4.2477 -2.7730 -0.8109 23 6 2.3119 -2.4375 2.6879 24 6 2.9254 -1.4893 3.3977 25 16 2.8214 0.0458 2.5454 26 1 -0.3933 0.3378 0.8162 27 1 1.7923 -0.5139 -0.8900 28 1 1.4838 2.4954 -1.1570 29 1 1.6697 2.4295 1.2678 30 1 1.5232 -2.9261 -1.8214 31 1 3.3638 -4.1172 -3.0115 32 1 2.6560 -5.5136 -2.1648 33 1 4.8548 -6.0006 -1.1281 34 1 4.9718 -6.0017 -2.9044 35 1 9.8014 -6.2798 -0.4834 36 1 7.5026 -5.3069 0.1701 37 1 6.3934 -2.6418 -0.6698 38 1 5.6852 -4.0384 0.1769 39 1 4.1939 -2.1546 -1.7069 40 1 4.0774 -2.1531 0.0692 41 1 2.2476 -3.4627 3.0212 42 1 3.4081 -1.6401 4.3520 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607854_14772022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:32:46 Heat of formation + Delta-G solvation = 5.182078 kcal Electronic energy + Delta-G solvation = -30521.233713 eV Core-core repulsion = 26336.856902 eV Total energy + Delta-G solvation = -4184.376810 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.081 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.08294 -40.00066 -39.55613 -38.34698 -37.41624 -36.90661 -35.86793 -34.48180 -32.03130 -31.86935 -31.66636 -29.16968 -27.42250 -24.58341 -24.38651 -23.82777 -23.23809 -22.08427 -21.75063 -21.04929 -20.05623 -19.26118 -19.20270 -18.59439 -18.09693 -17.29570 -16.95457 -16.78505 -16.40612 -16.25283 -16.07876 -15.72278 -15.50766 -15.20604 -15.07842 -14.85349 -14.26075 -14.16054 -14.01881 -13.94239 -13.84868 -13.24908 -13.20489 -13.15423 -13.07027 -12.90472 -12.66331 -12.59927 -12.33253 -12.21138 -12.09451 -11.97490 -11.80427 -11.72781 -11.47564 -11.46289 -11.17486 -10.77560 -10.41025 -10.19039 -10.14918 -9.79260 -5.08413 -0.72933 -0.48321 0.39050 0.64320 0.92407 1.08658 1.15654 1.50928 1.89380 1.91100 1.96004 2.07189 2.71768 3.11973 3.23854 3.44078 3.48678 3.61971 3.75140 3.91289 3.99833 4.11549 4.19490 4.25215 4.25827 4.30950 4.33033 4.42667 4.45502 4.49597 4.52851 4.61296 4.75153 4.85282 4.94583 4.96013 5.11477 5.12029 5.15241 5.17594 5.23092 5.27233 5.37550 5.49929 6.09212 6.31576 6.39373 7.77210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.509 6.509 2 C -0.079 4.079 3 Si 0.728 3.272 4 C -0.104 4.104 5 C -0.661 4.661 6 S 2.708 3.292 7 O -0.961 6.961 8 O -0.992 6.992 9 N -1.101 6.101 10 C 0.145 3.855 11 H 0.091 0.909 12 C -0.119 4.119 13 C -0.105 4.105 14 C 0.001 3.999 15 H 0.108 0.892 16 C 0.194 3.806 17 N -0.346 5.346 18 N -0.357 5.357 19 C 0.168 3.832 20 N -0.568 5.568 21 C -0.110 4.110 22 C -0.138 4.138 23 C -0.093 4.093 24 C -0.204 4.204 25 S 0.181 5.819 26 H 0.384 0.616 27 H 0.148 0.852 28 H -0.272 1.272 29 H -0.258 1.258 30 H 0.429 0.571 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.260 0.740 36 H 0.446 0.554 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.158 0.842 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.398 3.168 6.023 8.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.317 6.317 2 C -0.190 4.190 3 Si 0.628 3.372 4 C -0.225 4.225 5 C -0.764 4.764 6 S 2.796 3.204 7 O -0.951 6.951 8 O -0.982 6.982 9 N -0.863 5.863 10 C 0.039 3.961 11 H 0.109 0.891 12 C -0.158 4.158 13 C -0.145 4.145 14 C -0.020 4.020 15 H 0.127 0.873 16 C -0.077 4.077 17 N -0.186 5.186 18 N -0.196 5.196 19 C -0.123 4.123 20 N -0.182 5.182 21 C -0.149 4.149 22 C -0.177 4.177 23 C -0.120 4.120 24 C -0.340 4.340 25 S 0.445 5.555 26 H 0.233 0.767 27 H 0.165 0.835 28 H -0.197 1.197 29 H -0.183 1.183 30 H 0.266 0.734 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.275 0.725 36 H 0.290 0.710 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.175 0.825 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 4.675 4.673 4.591 8.047 hybrid contribution -1.749 -1.259 1.925 2.890 sum 2.926 3.413 6.515 7.916 Atomic orbital electron populations 1.86874 1.15675 1.86168 1.42937 1.25195 0.85290 1.12203 0.96336 0.94703 0.90173 0.72184 0.80111 1.25032 1.00493 0.95979 1.01029 1.29713 1.22144 1.09279 1.15225 1.01319 0.72973 0.72979 0.73093 1.93679 1.44287 1.75298 1.81787 1.93546 1.86701 1.40753 1.77202 1.55385 1.30304 1.75933 1.24705 1.21046 0.80467 0.94158 1.00477 0.89115 1.21777 0.96419 0.99566 0.98070 1.21518 0.92942 0.96905 1.03096 1.19872 0.83617 0.96258 1.02277 0.87344 1.25253 0.98914 1.00889 0.82634 1.74190 1.00002 1.17230 1.27151 1.74192 1.17207 1.18121 1.10036 1.27261 0.90192 1.00472 0.94330 1.44068 1.15567 1.46543 1.12056 1.21602 0.97816 0.99248 0.96214 1.22115 0.92681 0.97951 1.04910 1.19835 0.97929 1.02069 0.92211 1.26222 1.06931 0.95062 1.05769 1.84508 1.49159 1.10997 1.10855 0.76671 0.83486 1.19698 1.18318 0.73370 0.89312 0.90890 0.90961 0.91669 0.72460 0.71030 0.89901 0.90243 0.88857 0.89987 0.82484 0.78659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -1.00 10.19 -127.13 -1.30 -2.30 16 2 C -0.08 0.30 2.22 71.23 0.16 0.46 16 3 Si 0.73 -3.70 31.10 68.60 2.13 -1.57 16 4 C -0.10 0.42 5.40 24.58 0.13 0.55 16 5 C -0.66 1.24 5.03 21.22 0.11 1.35 16 6 S 2.71 5.37 5.35 -56.49 -0.30 5.07 16 7 O -0.96 -8.15 14.98 -119.05 -1.78 -9.93 16 8 O -0.99 -8.16 16.73 -128.00 -2.14 -10.30 16 9 N -1.10 6.15 5.38 -169.38 -0.91 5.24 16 10 C 0.15 -1.18 2.79 44.99 0.13 -1.06 16 11 H 0.09 -0.66 7.52 -2.38 -0.02 -0.68 16 12 C -0.12 0.95 5.48 30.59 0.17 1.12 16 13 C -0.11 0.72 5.19 30.59 0.16 0.87 16 14 C 0.00 0.00 2.66 -11.54 -0.03 -0.04 16 15 H 0.11 -0.67 8.14 -2.39 -0.02 -0.69 16 16 C 0.19 -0.14 6.99 137.98 0.96 0.82 16 17 N -0.35 -3.18 12.21 -50.15 -0.61 -3.79 16 18 N -0.36 -3.19 12.21 -59.99 -0.73 -3.93 16 19 C 0.17 -0.40 13.19 180.11 2.37 1.98 16 20 N -0.57 3.68 5.96 -189.86 -1.13 2.55 16 21 C -0.11 1.30 4.98 30.61 0.15 1.46 16 22 C -0.14 1.62 5.53 30.61 0.17 1.79 16 23 C -0.09 0.31 9.70 21.22 0.21 0.52 16 24 C -0.20 1.35 11.23 66.72 0.75 2.10 16 25 S 0.18 -1.16 20.60 -56.49 -1.16 -2.33 16 26 H 0.38 -0.99 8.78 -74.06 -0.65 -1.64 16 27 H 0.15 -1.18 7.90 -2.38 -0.02 -1.19 16 28 H -0.27 -0.54 7.11 99.48 0.71 0.17 16 29 H -0.26 0.45 7.11 99.48 0.71 1.15 16 30 H 0.43 -3.76 8.88 -96.75 -0.86 -4.61 16 31 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 32 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H 0.07 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.06 -0.21 8.14 -2.38 -0.02 -0.23 16 35 H 0.26 -3.11 8.06 -2.91 -0.02 -3.14 16 36 H 0.45 -6.45 8.29 -92.71 -0.77 -7.22 16 37 H 0.08 -0.99 8.14 -2.39 -0.02 -1.01 16 38 H 0.08 -1.15 7.52 -2.39 -0.02 -1.17 16 39 H 0.09 -1.27 8.14 -2.39 -0.02 -1.29 16 40 H 0.08 -1.02 7.12 -2.39 -0.02 -1.03 16 41 H 0.16 -0.58 7.74 -2.91 -0.02 -0.61 16 42 H 0.20 -2.24 8.06 -2.91 -0.02 -2.26 16 Total: 0.00 -33.10 366.13 -3.65 -36.75 By element: Atomic # 1 Polarization: -26.24 SS G_CDS: -1.14 Total: -27.38 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 5.43 Total: 11.92 kcal Atomic # 7 Polarization: 3.46 SS G_CDS: -3.39 Total: 0.07 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -5.22 Total: -22.53 kcal Atomic # 14 Polarization: -3.70 SS G_CDS: 2.13 Total: -1.57 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.47 Total: 2.74 kcal Total: -33.10 -3.65 -36.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607854_14772022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.928 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds