Wall clock time and date at job start Mon Mar 8 2021 11:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86301 * 109.46880 * 2 1 4 4 C 1.50694 * 109.47665 * 119.99919 * 2 1 3 5 5 C 1.33397 * 125.20165 * 65.28684 * 4 2 1 6 6 C 1.38417 * 114.92001 * 180.20979 * 5 4 2 7 7 S 1.76198 * 122.53964 * 179.76118 * 6 5 4 8 8 O 1.42100 * 106.40654 * 156.19527 * 7 6 5 9 9 O 1.42104 * 106.40203 * 23.27618 * 7 6 5 10 10 N 1.65601 * 107.21983 * 269.73708 * 7 6 5 11 11 C 1.46500 * 119.99880 * 64.99705 * 10 7 6 12 12 H 1.09002 * 109.47092 * 335.00170 * 11 10 7 13 13 C 1.52997 * 109.47007 * 95.00118 * 11 10 7 14 14 C 1.52999 * 109.47317 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47159 * 300.00546 * 14 13 11 16 16 H 1.09002 * 109.46935 * 299.99411 * 15 14 13 17 17 C 1.50699 * 109.47155 * 179.97438 * 15 14 13 18 18 N 1.30521 * 126.34898 * 144.68564 * 17 15 14 19 19 N 1.28597 * 109.67282 * 179.82495 * 18 17 15 20 20 C 1.30514 * 109.67299 * 0.44746 * 19 18 17 21 21 N 1.35492 * 107.31104 * 359.73264 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 15 14 13 23 23 C 1.53000 * 109.47023 * 214.99911 * 11 10 7 24 24 C 1.33384 * 114.92300 * 359.49258 * 6 5 4 25 25 S 1.75882 * 125.20669 * 244.97988 * 4 2 1 26 26 H 0.96705 * 113.99877 * 299.99691 * 1 2 3 27 27 H 1.09003 * 109.47289 * 240.00431 * 2 1 3 28 28 H 1.48499 * 110.00480 * 300.00237 * 3 2 1 29 29 H 1.48500 * 110.00181 * 61.32162 * 3 2 1 30 30 H 1.07999 * 122.54028 * 359.97335 * 5 4 2 31 31 H 0.96996 * 120.00261 * 245.00081 * 10 7 6 32 32 H 1.08996 * 109.47853 * 300.00060 * 13 11 10 33 33 H 1.09002 * 109.47153 * 60.00089 * 13 11 10 34 34 H 1.09000 * 109.47486 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.46716 * 60.00091 * 14 13 11 36 36 H 1.08007 * 126.34763 * 179.73227 * 20 19 18 37 37 H 0.96996 * 126.98551 * 179.97438 * 21 20 19 38 38 H 1.08993 * 109.47194 * 179.97438 * 22 15 14 39 39 H 1.09002 * 109.46695 * 59.99734 * 22 15 14 40 40 H 1.08992 * 109.47399 * 300.00063 * 23 11 10 41 41 H 1.09004 * 109.46724 * 60.00549 * 23 11 10 42 42 H 1.08009 * 125.20432 * 180.25025 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 1.2304 5 6 1.7581 -2.0063 1.4947 6 6 2.3057 -2.4358 2.6913 7 16 2.1896 -4.1056 3.2414 8 8 3.2722 -4.3086 4.1392 9 8 1.9845 -4.8976 2.0795 10 7 0.8056 -4.2299 4.1423 11 6 -0.5009 -4.0362 3.5083 12 1 -0.3858 -3.4118 2.6223 13 6 -1.0777 -5.3943 3.1038 14 6 -2.4424 -5.1922 2.4423 15 6 -3.3912 -4.5085 3.4289 16 1 -3.5059 -5.1330 4.3148 17 6 -4.7352 -4.3088 2.7771 18 7 -5.8985 -4.3835 3.3643 19 7 -6.8308 -4.1545 2.5087 20 6 -6.3052 -3.9328 1.3349 21 7 -4.9603 -4.0244 1.4716 22 6 -2.8144 -3.1504 3.8335 23 6 -1.4499 -3.3524 4.4946 24 6 2.9327 -1.4910 3.3936 25 16 2.8425 0.0408 2.5339 26 1 -0.3933 0.4417 0.7651 27 1 1.7923 -0.5138 -0.8900 28 1 1.5613 2.4680 -1.2084 29 1 1.5878 2.4586 1.2242 30 1 1.2274 -2.6694 0.8276 31 1 0.8599 -4.4308 5.0896 32 1 -0.4017 -5.8816 2.4012 33 1 -1.1928 -6.0187 3.9898 34 1 -2.8536 -6.1598 2.1544 35 1 -2.3278 -4.5676 1.5563 36 1 -6.8426 -3.7163 0.4234 37 1 -4.2939 -3.9100 0.7761 38 1 -3.4905 -2.6632 4.5359 39 1 -2.6997 -2.5259 2.9475 40 1 -1.5650 -3.9768 5.3805 41 1 -1.0390 -2.3848 4.7827 42 1 3.4209 -1.6432 4.3450 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607854_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:32:51 Heat of formation + Delta-G solvation = 2.313411 kcal Electronic energy + Delta-G solvation = -29863.088857 eV Core-core repulsion = 25678.587651 eV Total energy + Delta-G solvation = -4184.501205 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.081 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -44.13107 -40.25599 -39.64723 -38.27779 -37.80837 -36.92235 -36.06740 -34.56136 -32.13433 -32.09013 -31.98487 -29.33127 -27.37026 -25.09210 -24.74356 -24.10456 -23.39553 -22.20820 -21.60349 -21.26262 -20.20514 -19.39806 -19.34985 -18.59435 -18.07854 -17.91567 -17.45377 -16.83124 -16.56808 -16.44300 -16.28769 -15.86880 -15.57346 -15.54424 -15.13351 -15.05954 -14.52507 -14.38349 -14.32903 -14.16659 -13.96844 -13.51088 -13.42686 -13.21955 -13.10451 -13.02308 -12.78916 -12.58006 -12.52986 -12.47815 -12.44057 -12.20399 -12.04846 -11.81979 -11.69571 -11.62015 -11.28465 -10.97508 -10.69655 -10.37251 -10.18990 -9.99423 -5.26067 -0.85029 -0.59501 0.18533 0.44532 0.80614 0.86529 1.00152 1.33770 1.70514 1.75866 1.91806 1.92761 2.63319 3.02798 3.04003 3.18614 3.30895 3.42383 3.46892 3.60322 3.69970 3.75590 3.88269 3.93003 3.93557 4.08414 4.10177 4.17379 4.22515 4.27656 4.32555 4.45396 4.50049 4.53063 4.65215 4.74727 4.80065 4.82212 4.90469 4.91998 4.93453 5.05884 5.13152 5.16370 5.75253 6.02810 6.06504 7.75326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.522 6.522 2 C -0.033 4.033 3 Si 0.650 3.350 4 C -0.227 4.227 5 C -0.045 4.045 6 C -0.689 4.689 7 S 2.707 3.293 8 O -0.955 6.955 9 O -0.946 6.946 10 N -1.111 6.111 11 C 0.153 3.847 12 H 0.086 0.914 13 C -0.138 4.138 14 C -0.117 4.117 15 C -0.005 4.005 16 H 0.111 0.889 17 C 0.186 3.814 18 N -0.291 5.291 19 N -0.296 5.296 20 C 0.154 3.846 21 N -0.581 5.581 22 C -0.109 4.109 23 C -0.124 4.124 24 C -0.081 4.081 25 S 0.162 5.838 26 H 0.377 0.623 27 H 0.131 0.869 28 H -0.232 1.232 29 H -0.239 1.239 30 H 0.156 0.844 31 H 0.421 0.579 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.222 0.778 37 H 0.429 0.571 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.104 3.990 -1.554 5.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.329 6.329 2 C -0.146 4.146 3 Si 0.549 3.451 4 C -0.344 4.344 5 C -0.074 4.074 6 C -0.788 4.788 7 S 2.794 3.206 8 O -0.945 6.945 9 O -0.936 6.936 10 N -0.870 5.870 11 C 0.046 3.954 12 H 0.104 0.896 13 C -0.177 4.177 14 C -0.156 4.156 15 C -0.025 4.025 16 H 0.129 0.871 17 C -0.083 4.083 18 N -0.132 5.132 19 N -0.135 5.135 20 C -0.135 4.135 21 N -0.194 5.194 22 C -0.148 4.148 23 C -0.163 4.163 24 C -0.220 4.220 25 S 0.425 5.575 26 H 0.225 0.775 27 H 0.148 0.852 28 H -0.155 1.155 29 H -0.163 1.163 30 H 0.174 0.826 31 H 0.256 0.744 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.239 0.761 37 H 0.269 0.731 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 2.900 5.214 -1.023 6.054 hybrid contribution -0.455 -0.622 -0.915 1.197 sum 2.445 4.592 -1.938 5.552 Atomic orbital electron populations 1.86636 1.17130 1.79888 1.49203 1.24395 0.83854 1.10231 0.96111 0.95089 0.91913 0.74872 0.83264 1.25009 1.08759 0.98304 1.02367 1.19617 0.98304 0.94856 0.94647 1.30056 1.15773 1.26514 1.06489 1.01702 0.72277 0.73195 0.73467 1.93622 1.51184 1.84938 1.64738 1.93611 1.85226 1.65176 1.49587 1.55645 1.20314 1.87673 1.23384 1.20867 0.82037 0.96811 0.95706 0.89582 1.22077 0.96105 0.97208 1.02305 1.21633 0.94784 1.01416 0.97734 1.19803 0.85303 0.98605 0.98824 0.87062 1.24865 0.98541 1.02882 0.82014 1.74308 0.95307 1.18450 1.25103 1.74308 1.24688 1.16615 0.97926 1.26583 0.81085 1.04373 1.01461 1.44137 1.09566 1.54510 1.11178 1.21559 0.96242 0.95534 1.01494 1.21836 0.94085 1.01713 0.98650 1.25931 0.97765 0.95583 1.02767 1.84501 1.50062 1.10294 1.12595 0.77543 0.85172 1.15491 1.16278 0.82630 0.74370 0.89435 0.90328 0.90422 0.91631 0.76136 0.73123 0.90179 0.91516 0.90210 0.90490 0.79652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 0.76 12.88 -35.23 -0.45 0.31 16 2 C -0.03 0.07 2.96 36.00 0.11 0.18 16 3 Si 0.65 -1.55 30.98 -169.99 -5.27 -6.81 16 4 C -0.23 0.38 5.70 -36.00 -0.21 0.17 16 5 C -0.05 0.05 9.16 -41.21 -0.38 -0.33 16 6 C -0.69 0.70 5.72 -41.21 -0.24 0.46 16 7 S 2.71 -0.45 5.71 -107.50 -0.61 -1.07 16 8 O -0.95 -2.63 17.64 -57.17 -1.01 -3.64 16 9 O -0.95 -2.41 16.89 -57.17 -0.97 -3.38 16 10 N -1.11 3.54 5.47 -4.89 -0.03 3.52 16 11 C 0.15 -0.56 2.65 -67.93 -0.18 -0.74 16 12 H 0.09 -0.35 7.41 -51.93 -0.38 -0.74 16 13 C -0.14 0.43 5.53 -26.73 -0.15 0.28 16 14 C -0.12 0.42 4.97 -26.73 -0.13 0.29 16 15 C 0.00 0.01 2.66 -91.77 -0.24 -0.23 16 16 H 0.11 -0.24 8.14 -51.93 -0.42 -0.66 16 17 C 0.19 0.05 6.99 -154.98 -1.08 -1.03 16 18 N -0.29 -1.31 12.21 32.80 0.40 -0.91 16 19 N -0.30 -1.32 12.21 29.69 0.36 -0.96 16 20 C 0.15 -0.05 13.19 -89.95 -1.19 -1.23 16 21 N -0.58 1.18 5.96 -11.36 -0.07 1.11 16 22 C -0.11 0.38 5.18 -26.76 -0.14 0.24 16 23 C -0.12 0.54 5.45 -26.75 -0.15 0.40 16 24 C -0.08 0.15 10.70 29.04 0.31 0.46 16 25 S 0.16 -0.36 20.60 -107.50 -2.21 -2.58 16 26 H 0.38 -1.60 8.70 45.56 0.40 -1.21 16 27 H 0.13 -0.37 7.96 -51.93 -0.41 -0.79 16 28 H -0.23 -0.11 7.11 56.52 0.40 0.30 16 29 H -0.24 0.20 7.11 56.52 0.40 0.60 16 30 H 0.16 -0.24 7.96 -52.49 -0.42 -0.66 16 31 H 0.42 -2.05 8.84 -34.47 -0.30 -2.36 16 32 H 0.09 -0.15 7.64 -51.93 -0.40 -0.54 16 33 H 0.08 -0.27 8.14 -51.93 -0.42 -0.70 16 34 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 35 H 0.06 -0.31 7.52 -51.93 -0.39 -0.70 16 36 H 0.22 -1.01 8.06 -52.48 -0.42 -1.43 16 37 H 0.43 -2.31 8.28 -40.82 -0.34 -2.65 16 38 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 39 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 40 H 0.08 -0.38 8.14 -51.93 -0.42 -0.80 16 41 H 0.08 -0.36 8.14 -51.93 -0.42 -0.78 16 42 H 0.19 -0.67 8.00 -52.48 -0.42 -1.09 16 LS Contribution 372.98 15.07 5.62 5.62 Total: 0.00 -12.89 372.98 -13.14 -26.03 By element: Atomic # 1 Polarization: -10.91 SS G_CDS: -5.25 Total: -16.16 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -3.66 Total: -1.08 kcal Atomic # 7 Polarization: 2.10 SS G_CDS: 0.67 Total: 2.76 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -2.43 Total: -6.72 kcal Atomic # 14 Polarization: -1.55 SS G_CDS: -5.27 Total: -6.81 kcal Atomic # 16 Polarization: -0.82 SS G_CDS: -2.83 Total: -3.64 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -12.89 -13.14 -26.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607854_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.341 kcal (2) G-P(sol) polarization free energy of solvation -12.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds