Wall clock time and date at job start Mon Mar 8 2021 11:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86301 * 109.46880 * 2 1 4 4 C 1.50694 * 109.47665 * 119.99919 * 2 1 3 5 5 C 1.33397 * 125.20165 * 65.28684 * 4 2 1 6 6 C 1.38417 * 114.92001 * 180.20979 * 5 4 2 7 7 S 1.76198 * 122.53964 * 179.76118 * 6 5 4 8 8 O 1.42100 * 106.40654 * 156.19527 * 7 6 5 9 9 O 1.42104 * 106.40203 * 23.27618 * 7 6 5 10 10 N 1.65601 * 107.21983 * 269.73708 * 7 6 5 11 11 C 1.46500 * 119.99880 * 64.99705 * 10 7 6 12 12 H 1.09002 * 109.47092 * 335.00170 * 11 10 7 13 13 C 1.52997 * 109.47007 * 95.00118 * 11 10 7 14 14 C 1.52999 * 109.47317 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47159 * 300.00546 * 14 13 11 16 16 H 1.09002 * 109.46935 * 299.99411 * 15 14 13 17 17 C 1.50699 * 109.47155 * 179.97438 * 15 14 13 18 18 N 1.30521 * 126.34898 * 144.68564 * 17 15 14 19 19 N 1.28597 * 109.67282 * 179.82495 * 18 17 15 20 20 C 1.30514 * 109.67299 * 0.44746 * 19 18 17 21 21 N 1.35492 * 107.31104 * 359.73264 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 15 14 13 23 23 C 1.53000 * 109.47023 * 214.99911 * 11 10 7 24 24 C 1.33384 * 114.92300 * 359.49258 * 6 5 4 25 25 S 1.75882 * 125.20669 * 244.97988 * 4 2 1 26 26 H 0.96705 * 113.99877 * 299.99691 * 1 2 3 27 27 H 1.09003 * 109.47289 * 240.00431 * 2 1 3 28 28 H 1.48499 * 110.00480 * 300.00237 * 3 2 1 29 29 H 1.48500 * 110.00181 * 61.32162 * 3 2 1 30 30 H 1.07999 * 122.54028 * 359.97335 * 5 4 2 31 31 H 0.96996 * 120.00261 * 245.00081 * 10 7 6 32 32 H 1.08996 * 109.47853 * 300.00060 * 13 11 10 33 33 H 1.09002 * 109.47153 * 60.00089 * 13 11 10 34 34 H 1.09000 * 109.47486 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.46716 * 60.00091 * 14 13 11 36 36 H 1.08007 * 126.34763 * 179.73227 * 20 19 18 37 37 H 0.96996 * 126.98551 * 179.97438 * 21 20 19 38 38 H 1.08993 * 109.47194 * 179.97438 * 22 15 14 39 39 H 1.09002 * 109.46695 * 59.99734 * 22 15 14 40 40 H 1.08992 * 109.47399 * 300.00063 * 23 11 10 41 41 H 1.09004 * 109.46724 * 60.00549 * 23 11 10 42 42 H 1.08009 * 125.20432 * 180.25025 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 1.2304 5 6 1.7581 -2.0063 1.4947 6 6 2.3057 -2.4358 2.6913 7 16 2.1896 -4.1056 3.2414 8 8 3.2722 -4.3086 4.1392 9 8 1.9845 -4.8976 2.0795 10 7 0.8056 -4.2299 4.1423 11 6 -0.5009 -4.0362 3.5083 12 1 -0.3858 -3.4118 2.6223 13 6 -1.0777 -5.3943 3.1038 14 6 -2.4424 -5.1922 2.4423 15 6 -3.3912 -4.5085 3.4289 16 1 -3.5059 -5.1330 4.3148 17 6 -4.7352 -4.3088 2.7771 18 7 -5.8985 -4.3835 3.3643 19 7 -6.8308 -4.1545 2.5087 20 6 -6.3052 -3.9328 1.3349 21 7 -4.9603 -4.0244 1.4716 22 6 -2.8144 -3.1504 3.8335 23 6 -1.4499 -3.3524 4.4946 24 6 2.9327 -1.4910 3.3936 25 16 2.8425 0.0408 2.5339 26 1 -0.3933 0.4417 0.7651 27 1 1.7923 -0.5138 -0.8900 28 1 1.5613 2.4680 -1.2084 29 1 1.5878 2.4586 1.2242 30 1 1.2274 -2.6694 0.8276 31 1 0.8599 -4.4308 5.0896 32 1 -0.4017 -5.8816 2.4012 33 1 -1.1928 -6.0187 3.9898 34 1 -2.8536 -6.1598 2.1544 35 1 -2.3278 -4.5676 1.5563 36 1 -6.8426 -3.7163 0.4234 37 1 -4.2939 -3.9100 0.7761 38 1 -3.4905 -2.6632 4.5359 39 1 -2.6997 -2.5259 2.9475 40 1 -1.5650 -3.9768 5.3805 41 1 -1.0390 -2.3848 4.7827 42 1 3.4209 -1.6432 4.3450 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607854_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:32:50 Heat of formation + Delta-G solvation = -2.664832 kcal Electronic energy + Delta-G solvation = -29863.304729 eV Core-core repulsion = 25678.587651 eV Total energy + Delta-G solvation = -4184.717078 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.081 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.13554 -40.02877 -39.49268 -38.35198 -37.65025 -37.00491 -35.91086 -34.52903 -32.06219 -31.85044 -31.80632 -29.22298 -27.20752 -24.95973 -24.62910 -23.88565 -23.29084 -22.12821 -21.46285 -21.03952 -20.10522 -19.29156 -19.19992 -18.53021 -17.94135 -17.77425 -17.30698 -16.83303 -16.39371 -16.38749 -16.21148 -15.71221 -15.46391 -15.27757 -14.94681 -14.90978 -14.34854 -14.24636 -14.16708 -13.98294 -13.85369 -13.38679 -13.32314 -13.25381 -13.14901 -12.95230 -12.73869 -12.53014 -12.39832 -12.34398 -12.15259 -12.03417 -11.85228 -11.78366 -11.53978 -11.50138 -11.21087 -10.81147 -10.48879 -10.23643 -10.20608 -9.82521 -5.08437 -0.78097 -0.46067 0.34919 0.60222 0.87258 0.98797 1.17431 1.47873 1.84046 1.85992 1.90646 2.05513 2.68831 3.17422 3.20879 3.33313 3.56095 3.60992 3.69425 3.84797 3.91597 3.96072 4.12167 4.18299 4.20889 4.25568 4.36443 4.39516 4.43977 4.47784 4.48844 4.55724 4.65457 4.79980 4.88817 4.90021 5.05919 5.06759 5.07354 5.11704 5.17631 5.22417 5.34322 5.43888 6.05709 6.25672 6.37310 7.71842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.035 4.035 3 Si 0.708 3.292 4 C -0.229 4.229 5 C -0.054 4.054 6 C -0.693 4.693 7 S 2.722 3.278 8 O -0.987 6.987 9 O -0.977 6.977 10 N -1.100 6.100 11 C 0.151 3.849 12 H 0.094 0.906 13 C -0.139 4.139 14 C -0.110 4.110 15 C 0.000 4.000 16 H 0.105 0.895 17 C 0.194 3.806 18 N -0.346 5.346 19 N -0.355 5.355 20 C 0.168 3.832 21 N -0.568 5.568 22 C -0.104 4.104 23 C -0.117 4.117 24 C -0.085 4.085 25 S 0.181 5.819 26 H 0.388 0.612 27 H 0.138 0.862 28 H -0.274 1.274 29 H -0.256 1.256 30 H 0.158 0.842 31 H 0.430 0.570 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.260 0.740 37 H 0.446 0.554 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.728 4.753 -2.020 6.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.147 4.147 3 Si 0.610 3.390 4 C -0.347 4.347 5 C -0.083 4.083 6 C -0.794 4.794 7 S 2.811 3.189 8 O -0.978 6.978 9 O -0.967 6.967 10 N -0.861 5.861 11 C 0.044 3.956 12 H 0.112 0.888 13 C -0.178 4.178 14 C -0.149 4.149 15 C -0.021 4.021 16 H 0.123 0.877 17 C -0.077 4.077 18 N -0.185 5.185 19 N -0.194 5.194 20 C -0.122 4.122 21 N -0.183 5.183 22 C -0.143 4.143 23 C -0.156 4.156 24 C -0.224 4.224 25 S 0.445 5.555 26 H 0.238 0.762 27 H 0.155 0.845 28 H -0.199 1.199 29 H -0.182 1.182 30 H 0.175 0.825 31 H 0.267 0.733 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.276 0.724 37 H 0.289 0.711 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.539 5.949 -1.470 7.076 hybrid contribution -0.671 -0.790 -0.819 1.321 sum 2.868 5.159 -2.289 6.330 Atomic orbital electron populations 1.86609 1.17428 1.80163 1.50123 1.24476 0.83674 1.10228 0.96315 0.94384 0.91117 0.73493 0.79983 1.25079 1.08724 0.98237 1.02634 1.19690 0.98700 0.95186 0.94759 1.29842 1.16792 1.25840 1.06925 1.00926 0.72118 0.73207 0.72665 1.93574 1.53015 1.85706 1.65461 1.93570 1.85703 1.66582 1.50854 1.55363 1.19606 1.87486 1.23683 1.20975 0.81638 0.96730 0.96266 0.88784 1.22069 0.96018 0.97529 1.02182 1.21587 0.94022 1.01405 0.97929 1.19866 0.84280 0.99267 0.98695 0.87718 1.25224 0.98436 1.01355 0.82709 1.74188 0.96759 1.20867 1.26714 1.74189 1.26105 1.19369 0.99748 1.27273 0.81676 1.01884 1.01385 1.44080 1.09583 1.53689 1.10912 1.21507 0.96287 0.94825 1.01681 1.21791 0.93197 1.02208 0.98453 1.26207 0.97259 0.95648 1.03335 1.84458 1.49433 1.09639 1.11968 0.76230 0.84475 1.19926 1.18155 0.82472 0.73272 0.90711 0.90073 0.90863 0.90039 0.72402 0.71073 0.91338 0.90555 0.89729 0.89564 0.78199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 2.04 12.88 -148.98 -1.92 0.13 16 2 C -0.03 0.18 2.96 71.23 0.21 0.39 16 3 Si 0.71 -3.58 30.98 68.60 2.13 -1.46 16 4 C -0.23 0.98 5.70 24.59 0.14 1.12 16 5 C -0.05 0.15 9.16 21.22 0.19 0.35 16 6 C -0.69 1.76 5.72 21.21 0.12 1.88 16 7 S 2.72 -0.46 5.71 -56.49 -0.32 -0.79 16 8 O -0.99 -5.86 17.64 -128.00 -2.26 -8.12 16 9 O -0.98 -5.51 16.89 -128.00 -2.16 -7.67 16 10 N -1.10 7.40 5.47 -169.39 -0.93 6.47 16 11 C 0.15 -1.21 2.65 44.99 0.12 -1.09 16 12 H 0.09 -0.88 7.41 -2.39 -0.02 -0.90 16 13 C -0.14 0.90 5.53 30.59 0.17 1.06 16 14 C -0.11 0.86 4.97 30.60 0.15 1.01 16 15 C 0.00 0.00 2.66 -11.54 -0.03 -0.03 16 16 H 0.10 -0.39 8.14 -2.39 -0.02 -0.40 16 17 C 0.19 0.16 6.99 137.98 0.96 1.13 16 18 N -0.35 -3.60 12.21 -50.15 -0.61 -4.21 16 19 N -0.36 -3.56 12.21 -59.99 -0.73 -4.30 16 20 C 0.17 -0.18 13.19 180.11 2.37 2.20 16 21 N -0.57 2.72 5.96 -189.86 -1.13 1.59 16 22 C -0.10 0.78 5.18 30.58 0.16 0.94 16 23 C -0.12 1.14 5.45 30.58 0.17 1.31 16 24 C -0.09 0.39 10.70 66.72 0.71 1.10 16 25 S 0.18 -1.01 20.60 -56.49 -1.16 -2.18 16 26 H 0.39 -3.70 8.70 -74.05 -0.64 -4.35 16 27 H 0.14 -0.91 7.96 -2.39 -0.02 -0.93 16 28 H -0.27 -0.50 7.11 99.48 0.71 0.20 16 29 H -0.26 0.57 7.11 99.48 0.71 1.28 16 30 H 0.16 -0.55 7.96 -2.91 -0.02 -0.58 16 31 H 0.43 -4.37 8.84 -96.75 -0.85 -5.23 16 32 H 0.07 -0.24 7.64 -2.39 -0.02 -0.25 16 33 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 34 H 0.07 -0.47 8.14 -2.39 -0.02 -0.49 16 35 H 0.08 -0.89 7.52 -2.39 -0.02 -0.90 16 36 H 0.26 -2.80 8.06 -2.91 -0.02 -2.82 16 37 H 0.45 -5.50 8.28 -92.71 -0.77 -6.27 16 38 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 39 H 0.08 -0.71 8.14 -2.39 -0.02 -0.73 16 40 H 0.08 -0.87 8.14 -2.39 -0.02 -0.89 16 41 H 0.09 -0.94 8.14 -2.39 -0.02 -0.96 16 42 H 0.20 -1.63 8.00 -2.91 -0.02 -1.65 16 Total: 0.00 -31.16 372.98 -4.78 -35.94 By element: Atomic # 1 Polarization: -25.64 SS G_CDS: -1.13 Total: -26.78 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 5.45 Total: 11.36 kcal Atomic # 7 Polarization: 2.95 SS G_CDS: -3.40 Total: -0.45 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -6.34 Total: -15.66 kcal Atomic # 14 Polarization: -3.58 SS G_CDS: 2.13 Total: -1.46 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -1.49 Total: -2.96 kcal Total: -31.16 -4.78 -35.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607854_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.277 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds