Wall clock time and date at job start Mon Mar 8 2021 11:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33398 * 125.19953 * 2 1 4 4 C 1.50697 * 122.54201 * 359.97058 * 3 2 1 5 5 O 1.42904 * 109.46623 * 82.99187 * 4 3 2 6 6 Si 1.86293 * 109.47133 * 322.99380 * 4 3 2 7 7 C 1.38421 * 114.91507 * 180.21090 * 3 2 1 8 8 S 1.76200 * 122.53695 * 179.76237 * 7 3 2 9 9 O 1.42104 * 106.40598 * 152.72637 * 8 7 3 10 10 O 1.42103 * 106.40173 * 19.80741 * 8 7 3 11 11 N 1.65606 * 107.21847 * 266.26635 * 8 7 3 12 12 C 1.46495 * 119.99610 * 64.99850 * 11 8 7 13 13 H 1.09001 * 109.47194 * 25.00221 * 12 11 8 14 14 C 1.53006 * 109.46793 * 145.00056 * 12 11 8 15 15 C 1.52998 * 109.47010 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47502 * 300.00182 * 15 14 12 17 17 H 1.09001 * 109.47020 * 299.99957 * 16 15 14 18 18 C 1.50697 * 109.47542 * 179.97438 * 16 15 14 19 19 N 1.30529 * 126.34530 * 95.02392 * 18 16 15 20 20 N 1.28596 * 109.67163 * 179.97438 * 19 18 16 21 21 C 1.30522 * 109.67370 * 359.97438 * 20 19 18 22 22 N 1.35490 * 126.34763 * 274.70937 * 18 16 15 23 23 C 1.53006 * 109.47137 * 59.99895 * 16 15 14 24 24 C 1.53002 * 109.47218 * 264.99818 * 12 11 8 25 25 C 1.33391 * 114.92332 * 359.49028 * 7 3 2 26 26 C 1.50706 * 125.20294 * 180.24911 * 25 7 3 27 27 S 1.75878 * 109.59332 * 0.27368 * 25 7 3 28 28 H 1.08999 * 109.47023 * 185.25555 * 1 2 3 29 29 H 1.09004 * 109.47143 * 305.25312 * 1 2 3 30 30 H 1.09000 * 109.47229 * 65.25766 * 1 2 3 31 31 H 1.08992 * 109.46823 * 202.99192 * 4 3 2 32 32 H 0.96695 * 114.00113 * 65.60292 * 5 4 3 33 33 H 1.48500 * 110.00191 * 186.41009 * 6 4 3 34 34 H 1.48502 * 110.00454 * 307.72687 * 6 4 3 35 35 H 0.96993 * 120.00205 * 244.99759 * 11 8 7 36 36 H 1.08999 * 109.46982 * 300.00037 * 14 12 11 37 37 H 1.09001 * 109.47116 * 60.00117 * 14 12 11 38 38 H 1.08999 * 109.47405 * 59.99925 * 15 14 12 39 39 H 1.08996 * 109.47227 * 180.02562 * 15 14 12 40 40 H 1.08003 * 126.34323 * 179.97438 * 21 20 19 41 41 H 0.96999 * 126.97766 * 0.04668 * 22 18 16 42 42 H 1.09001 * 109.47116 * 60.00120 * 23 16 15 43 43 H 1.08999 * 109.46982 * 180.02562 * 23 16 15 44 44 H 1.08999 * 109.46928 * 300.00588 * 24 12 11 45 45 H 1.08996 * 109.46700 * 60.00337 * 24 12 11 46 46 H 1.09000 * 109.46888 * 89.99774 * 26 25 7 47 47 H 1.08993 * 109.46975 * 210.00349 * 26 25 7 48 48 H 1.09007 * 109.47132 * 330.00318 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0901 0.0000 4 6 1.7051 2.4847 -0.0007 5 8 1.3720 2.8636 1.3364 6 14 0.1723 2.5279 -1.0585 7 6 3.6379 0.8429 -0.0046 8 16 4.8355 2.1353 -0.0116 9 8 5.9994 1.6074 0.6097 10 8 4.1693 3.3023 0.4505 11 7 5.2384 2.4218 -1.5922 12 6 4.2335 2.9452 -2.5208 13 1 3.4699 3.4868 -1.9625 14 6 4.9046 3.8925 -3.5175 15 6 3.8553 4.4387 -4.4878 16 6 3.2071 3.2777 -5.2447 17 1 3.9710 2.7362 -5.8027 18 6 2.1731 3.8156 -6.1999 19 7 2.3537 4.0848 -7.4643 20 7 1.2587 4.5265 -7.9736 21 6 0.3295 4.5587 -7.0575 22 7 0.8820 4.1039 -5.9069 23 6 2.5360 2.3304 -4.2480 24 6 3.5849 1.7845 -3.2778 25 6 3.9751 -0.4476 0.0024 26 6 5.3861 -0.9770 0.0048 27 16 2.5210 -1.4371 0.0077 28 1 -0.3633 -1.0233 0.0941 29 1 -0.3633 0.5932 0.8392 30 1 -0.3634 0.4301 -0.9333 31 1 2.4432 3.1791 -0.4019 32 1 2.1358 2.9464 1.9236 33 1 -0.3126 3.9250 -1.1935 34 1 0.4641 1.9598 -2.3992 35 1 6.1396 2.2430 -1.9031 36 1 5.3667 4.7193 -2.9782 37 1 5.6682 3.3509 -4.0759 38 1 3.0913 4.9801 -3.9298 39 1 4.3334 5.1131 -5.1981 40 1 -0.6913 4.8844 -7.1924 41 1 0.4430 4.0066 -5.0474 42 1 1.7721 2.8719 -3.6899 43 1 2.0746 1.5031 -4.7872 44 1 4.3485 1.2430 -3.8361 45 1 3.1069 1.1097 -2.5677 46 1 5.7267 -1.0988 1.0330 47 1 5.4135 -1.9406 -0.5038 48 1 6.0387 -0.2741 -0.5132 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607854_15065288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:32:56 Heat of formation + Delta-G solvation = 2.171941 kcal Electronic energy + Delta-G solvation = -35951.675254 eV Core-core repulsion = 31456.092676 eV Total energy + Delta-G solvation = -4495.582578 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.112 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -44.17688 -40.61425 -40.10623 -38.61192 -37.08936 -36.89430 -36.15014 -34.61865 -34.55298 -32.25333 -32.14752 -31.03304 -29.39741 -28.08104 -26.08004 -24.82281 -24.20513 -23.45930 -23.32495 -22.27478 -21.50239 -20.80809 -20.05069 -19.47014 -19.05815 -18.66325 -18.24268 -17.91935 -16.99148 -16.88502 -16.54969 -16.39391 -16.21720 -15.91722 -15.61638 -15.54505 -15.19672 -15.18056 -14.80758 -14.66874 -14.56078 -14.38063 -14.34931 -14.17352 -13.71238 -13.61117 -13.51346 -13.43452 -13.27763 -13.10253 -12.86241 -12.82704 -12.66445 -12.61172 -12.55454 -12.31195 -12.15246 -11.91031 -11.86154 -11.79060 -11.74046 -11.35045 -11.24654 -10.97311 -10.77467 -10.23215 -10.11938 -9.66589 -4.89396 -0.89158 -0.54566 0.25522 0.57225 0.75876 0.76853 1.26080 1.40231 1.70228 1.82366 1.84205 1.87857 2.52398 2.96540 3.09428 3.21503 3.33243 3.34261 3.51626 3.57629 3.69005 3.78369 3.81679 3.82247 3.88346 3.90900 3.98837 4.02610 4.08238 4.10535 4.16035 4.18374 4.27161 4.31917 4.36790 4.41636 4.45197 4.50834 4.57959 4.66885 4.68258 4.75439 4.78842 4.81022 4.85776 4.92443 4.97092 5.05784 5.07243 5.10918 5.67658 5.96581 6.60777 7.71061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.175 4.175 3 C -0.074 4.074 4 C -0.078 4.078 5 O -0.527 6.527 6 Si 0.694 3.306 7 C -0.687 4.687 8 S 2.703 3.297 9 O -0.950 6.950 10 O -0.951 6.951 11 N -1.110 6.110 12 C 0.145 3.855 13 H 0.090 0.910 14 C -0.121 4.121 15 C -0.112 4.112 16 C -0.004 4.004 17 H 0.113 0.887 18 C 0.185 3.815 19 N -0.288 5.288 20 N -0.294 5.294 21 C 0.155 3.845 22 N -0.583 5.583 23 C -0.119 4.119 24 C -0.141 4.141 25 C -0.049 4.049 26 C -0.111 4.111 27 S 0.166 5.834 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.370 0.630 33 H -0.247 1.247 34 H -0.242 1.242 35 H 0.422 0.578 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.223 0.777 41 H 0.427 0.573 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.102 0.898 47 H 0.083 0.917 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.893 -4.505 1.599 5.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.293 4.293 3 C -0.085 4.085 4 C -0.189 4.189 5 O -0.332 6.332 6 Si 0.593 3.407 7 C -0.786 4.786 8 S 2.791 3.209 9 O -0.940 6.940 10 O -0.941 6.941 11 N -0.869 5.869 12 C 0.038 3.962 13 H 0.108 0.892 14 C -0.160 4.160 15 C -0.151 4.151 16 C -0.024 4.024 17 H 0.131 0.869 18 C -0.084 4.084 19 N -0.129 5.129 20 N -0.134 5.134 21 C -0.134 4.134 22 N -0.196 5.196 23 C -0.158 4.158 24 C -0.180 4.180 25 C -0.170 4.170 26 C -0.170 4.170 27 S 0.433 5.567 28 H 0.108 0.892 29 H 0.121 0.879 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.218 0.782 33 H -0.171 1.171 34 H -0.167 1.167 35 H 0.257 0.743 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.240 0.760 41 H 0.266 0.734 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.120 0.880 47 H 0.102 0.898 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.272 -5.171 -0.080 6.120 hybrid contribution 0.868 0.952 1.588 2.045 sum -2.404 -4.219 1.508 5.084 Atomic orbital electron populations 1.20362 0.87314 1.03894 1.03499 1.24377 1.00245 0.95076 1.09612 1.18634 0.90153 0.97345 1.02373 1.25598 1.10736 0.90555 0.92038 1.86663 1.36515 1.90826 1.19209 0.92660 0.86148 0.83972 0.77959 1.29516 1.11929 1.13361 1.23828 1.01670 0.73199 0.73648 0.72384 1.93624 1.46854 1.80319 1.73199 1.93550 1.75683 1.46178 1.78644 1.55593 1.20921 1.81081 1.29349 1.20990 0.89919 0.94337 0.90979 0.89213 1.21800 0.98333 0.99353 0.96495 1.21604 0.98495 0.96869 0.98119 1.19789 0.93643 0.96350 0.92668 0.86865 1.24834 0.85250 1.03120 0.95211 1.74315 1.18412 1.15530 1.04605 1.74316 0.96263 1.16872 1.25916 1.26603 1.02263 1.02344 0.82154 1.44153 1.11154 1.50415 1.13834 1.21718 0.98136 0.99297 0.96673 1.22113 0.98938 0.98156 0.98816 1.24556 1.00775 0.95050 0.96623 1.20885 0.88168 1.02457 1.05440 1.84452 0.94964 1.08207 1.69088 0.89237 0.87904 0.89380 0.88871 0.78182 1.17136 1.16653 0.74294 0.89917 0.90077 0.91454 0.89757 0.76043 0.73352 0.91922 0.90324 0.89817 0.90675 0.88002 0.89781 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.33 8.21 36.01 0.30 0.62 16 2 C -0.18 0.19 6.14 -36.00 -0.22 -0.03 16 3 C -0.07 0.00 4.22 -106.25 -0.45 -0.45 16 4 C -0.08 -0.05 1.94 36.00 0.07 0.02 16 5 O -0.53 -0.98 12.63 -35.23 -0.45 -1.42 16 6 Si 0.69 -0.91 26.38 -169.99 -4.49 -5.40 16 7 C -0.69 -0.02 4.88 -41.21 -0.20 -0.22 16 8 S 2.70 1.48 5.23 -107.50 -0.56 0.92 16 9 O -0.95 -2.56 15.32 -57.17 -0.88 -3.44 16 10 O -0.95 -2.58 13.43 -57.86 -0.78 -3.35 16 11 N -1.11 2.72 5.47 -4.89 -0.03 2.70 16 12 C 0.14 -0.38 2.79 -67.93 -0.19 -0.57 16 13 H 0.09 -0.18 5.75 -51.93 -0.30 -0.48 16 14 C -0.12 0.41 5.45 -26.73 -0.15 0.26 16 15 C -0.11 0.29 5.19 -26.73 -0.14 0.15 16 16 C 0.00 0.01 2.66 -91.77 -0.24 -0.24 16 17 H 0.11 -0.25 8.14 -51.93 -0.42 -0.67 16 18 C 0.18 0.11 6.99 -154.98 -1.08 -0.97 16 19 N -0.29 -1.31 12.21 32.80 0.40 -0.91 16 20 N -0.29 -1.32 12.21 29.69 0.36 -0.95 16 21 C 0.16 -0.02 13.19 -89.94 -1.19 -1.21 16 22 N -0.58 0.87 5.96 -11.36 -0.07 0.80 16 23 C -0.12 0.36 4.88 -26.75 -0.13 0.23 16 24 C -0.14 0.45 5.52 -26.75 -0.15 0.31 16 25 C -0.05 0.04 6.49 -36.00 -0.23 -0.20 16 26 C -0.11 0.21 9.11 36.01 0.33 0.54 16 27 S 0.17 -0.26 23.31 -107.50 -2.51 -2.76 16 28 H 0.09 -0.43 8.14 -51.93 -0.42 -0.86 16 29 H 0.10 -0.39 7.45 -51.93 -0.39 -0.78 16 30 H 0.09 -0.42 4.51 -51.93 -0.23 -0.65 16 31 H 0.09 0.09 3.37 -51.93 -0.18 -0.09 16 32 H 0.37 0.33 8.46 45.56 0.39 0.72 16 33 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 34 H -0.24 0.54 5.93 56.52 0.34 0.87 16 35 H 0.42 -1.90 8.84 -34.48 -0.30 -2.20 16 36 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 37 H 0.08 -0.36 8.14 -51.93 -0.42 -0.78 16 38 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 39 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 40 H 0.22 -1.00 8.06 -52.48 -0.42 -1.43 16 41 H 0.43 -1.90 8.27 -40.82 -0.34 -2.24 16 42 H 0.06 -0.21 5.82 -51.93 -0.30 -0.51 16 43 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 44 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 45 H 0.07 -0.20 6.41 -51.93 -0.33 -0.53 16 46 H 0.10 -0.17 8.14 -51.93 -0.42 -0.59 16 47 H 0.08 -0.31 8.14 -51.93 -0.42 -0.74 16 48 H 0.09 -0.20 6.41 -51.93 -0.33 -0.53 16 LS Contribution 387.61 15.07 5.84 5.84 Total: 0.00 -11.27 387.61 -13.05 -24.32 By element: Atomic # 1 Polarization: -8.37 SS G_CDS: -6.23 Total: -14.60 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -3.68 Total: -1.75 kcal Atomic # 7 Polarization: 0.97 SS G_CDS: 0.67 Total: 1.64 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -2.10 Total: -8.21 kcal Atomic # 14 Polarization: -0.91 SS G_CDS: -4.49 Total: -5.40 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -3.07 Total: -1.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -11.27 -13.05 -24.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607854_15065288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.493 kcal (2) G-P(sol) polarization free energy of solvation -11.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds