Wall clock time and date at job start Mon Mar 8 2021 11:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33398 * 125.19953 * 2 1 4 4 C 1.50697 * 122.54201 * 359.97058 * 3 2 1 5 5 O 1.42904 * 109.46623 * 82.99187 * 4 3 2 6 6 Si 1.86293 * 109.47133 * 322.99380 * 4 3 2 7 7 C 1.38421 * 114.91507 * 180.21090 * 3 2 1 8 8 S 1.76200 * 122.53695 * 179.76237 * 7 3 2 9 9 O 1.42104 * 106.40598 * 152.72637 * 8 7 3 10 10 O 1.42103 * 106.40173 * 19.80741 * 8 7 3 11 11 N 1.65606 * 107.21847 * 266.26635 * 8 7 3 12 12 C 1.46495 * 119.99610 * 64.99850 * 11 8 7 13 13 H 1.09001 * 109.47194 * 25.00221 * 12 11 8 14 14 C 1.53006 * 109.46793 * 145.00056 * 12 11 8 15 15 C 1.52998 * 109.47010 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47502 * 300.00182 * 15 14 12 17 17 H 1.09001 * 109.47020 * 299.99957 * 16 15 14 18 18 C 1.50697 * 109.47542 * 179.97438 * 16 15 14 19 19 N 1.30529 * 126.34530 * 95.02392 * 18 16 15 20 20 N 1.28596 * 109.67163 * 179.97438 * 19 18 16 21 21 C 1.30522 * 109.67370 * 359.97438 * 20 19 18 22 22 N 1.35490 * 126.34763 * 274.70937 * 18 16 15 23 23 C 1.53006 * 109.47137 * 59.99895 * 16 15 14 24 24 C 1.53002 * 109.47218 * 264.99818 * 12 11 8 25 25 C 1.33391 * 114.92332 * 359.49028 * 7 3 2 26 26 C 1.50706 * 125.20294 * 180.24911 * 25 7 3 27 27 S 1.75878 * 109.59332 * 0.27368 * 25 7 3 28 28 H 1.08999 * 109.47023 * 185.25555 * 1 2 3 29 29 H 1.09004 * 109.47143 * 305.25312 * 1 2 3 30 30 H 1.09000 * 109.47229 * 65.25766 * 1 2 3 31 31 H 1.08992 * 109.46823 * 202.99192 * 4 3 2 32 32 H 0.96695 * 114.00113 * 65.60292 * 5 4 3 33 33 H 1.48500 * 110.00191 * 186.41009 * 6 4 3 34 34 H 1.48502 * 110.00454 * 307.72687 * 6 4 3 35 35 H 0.96993 * 120.00205 * 244.99759 * 11 8 7 36 36 H 1.08999 * 109.46982 * 300.00037 * 14 12 11 37 37 H 1.09001 * 109.47116 * 60.00117 * 14 12 11 38 38 H 1.08999 * 109.47405 * 59.99925 * 15 14 12 39 39 H 1.08996 * 109.47227 * 180.02562 * 15 14 12 40 40 H 1.08003 * 126.34323 * 179.97438 * 21 20 19 41 41 H 0.96999 * 126.97766 * 0.04668 * 22 18 16 42 42 H 1.09001 * 109.47116 * 60.00120 * 23 16 15 43 43 H 1.08999 * 109.46982 * 180.02562 * 23 16 15 44 44 H 1.08999 * 109.46928 * 300.00588 * 24 12 11 45 45 H 1.08996 * 109.46700 * 60.00337 * 24 12 11 46 46 H 1.09000 * 109.46888 * 89.99774 * 26 25 7 47 47 H 1.08993 * 109.46975 * 210.00349 * 26 25 7 48 48 H 1.09007 * 109.47132 * 330.00318 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0901 0.0000 4 6 1.7051 2.4847 -0.0007 5 8 1.3720 2.8636 1.3364 6 14 0.1723 2.5279 -1.0585 7 6 3.6379 0.8429 -0.0046 8 16 4.8355 2.1353 -0.0116 9 8 5.9994 1.6074 0.6097 10 8 4.1693 3.3023 0.4505 11 7 5.2384 2.4218 -1.5922 12 6 4.2335 2.9452 -2.5208 13 1 3.4699 3.4868 -1.9625 14 6 4.9046 3.8925 -3.5175 15 6 3.8553 4.4387 -4.4878 16 6 3.2071 3.2777 -5.2447 17 1 3.9710 2.7362 -5.8027 18 6 2.1731 3.8156 -6.1999 19 7 2.3537 4.0848 -7.4643 20 7 1.2587 4.5265 -7.9736 21 6 0.3295 4.5587 -7.0575 22 7 0.8820 4.1039 -5.9069 23 6 2.5360 2.3304 -4.2480 24 6 3.5849 1.7845 -3.2778 25 6 3.9751 -0.4476 0.0024 26 6 5.3861 -0.9770 0.0048 27 16 2.5210 -1.4371 0.0077 28 1 -0.3633 -1.0233 0.0941 29 1 -0.3633 0.5932 0.8392 30 1 -0.3634 0.4301 -0.9333 31 1 2.4432 3.1791 -0.4019 32 1 2.1358 2.9464 1.9236 33 1 -0.3126 3.9250 -1.1935 34 1 0.4641 1.9598 -2.3992 35 1 6.1396 2.2430 -1.9031 36 1 5.3667 4.7193 -2.9782 37 1 5.6682 3.3509 -4.0759 38 1 3.0913 4.9801 -3.9298 39 1 4.3334 5.1131 -5.1981 40 1 -0.6913 4.8844 -7.1924 41 1 0.4430 4.0066 -5.0474 42 1 1.7721 2.8719 -3.6899 43 1 2.0746 1.5031 -4.7872 44 1 4.3485 1.2430 -3.8361 45 1 3.1069 1.1097 -2.5677 46 1 5.7267 -1.0988 1.0330 47 1 5.4135 -1.9406 -0.5038 48 1 6.0387 -0.2741 -0.5132 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607854_15065288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:32:55 Heat of formation + Delta-G solvation = -0.833585 kcal Electronic energy + Delta-G solvation = -35951.805584 eV Core-core repulsion = 31456.092676 eV Total energy + Delta-G solvation = -4495.712907 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.112 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -44.19591 -40.49117 -39.96214 -38.69063 -37.18520 -36.94111 -36.03653 -34.60571 -34.40298 -32.15676 -31.97524 -30.83627 -29.32106 -28.01610 -25.93208 -24.73626 -24.02184 -23.39555 -23.23794 -22.21981 -21.33223 -20.74105 -19.98965 -19.39577 -19.00447 -18.60925 -18.23306 -17.79412 -16.93847 -16.90459 -16.49765 -16.30866 -16.20096 -15.77788 -15.47850 -15.40505 -15.10211 -15.02668 -14.71743 -14.49354 -14.37795 -14.20221 -14.16632 -14.11285 -13.54121 -13.46007 -13.41275 -13.39904 -13.38289 -13.03545 -12.79788 -12.76483 -12.53297 -12.52159 -12.33597 -12.20562 -11.98576 -11.88877 -11.75549 -11.68552 -11.61265 -11.33332 -11.20787 -10.98386 -10.60501 -10.28467 -9.98789 -9.54593 -4.77792 -0.87419 -0.45087 0.38644 0.67713 0.80658 0.84393 1.33051 1.50708 1.80816 1.82546 1.90704 1.93157 2.52707 3.07557 3.12397 3.41933 3.47222 3.55255 3.69722 3.71680 3.85318 3.88368 3.97809 4.00541 4.04330 4.08320 4.19425 4.21659 4.27666 4.31406 4.32869 4.37782 4.46550 4.48521 4.50321 4.59498 4.66462 4.68204 4.77404 4.88707 4.90040 4.99147 4.99873 5.02924 5.04887 5.06492 5.12647 5.19430 5.25613 5.31452 5.94193 6.15244 6.54497 7.66286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.176 4.176 3 C -0.089 4.089 4 C -0.098 4.098 5 O -0.540 6.540 6 Si 0.739 3.261 7 C -0.692 4.692 8 S 2.710 3.290 9 O -0.977 6.977 10 O -0.978 6.978 11 N -1.099 6.099 12 C 0.142 3.858 13 H 0.082 0.918 14 C -0.117 4.117 15 C -0.108 4.108 16 C 0.001 3.999 17 H 0.114 0.886 18 C 0.191 3.809 19 N -0.338 5.338 20 N -0.352 5.352 21 C 0.170 3.830 22 N -0.573 5.573 23 C -0.116 4.116 24 C -0.139 4.139 25 C -0.057 4.057 26 C -0.117 4.117 27 S 0.190 5.810 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.369 0.631 33 H -0.283 1.283 34 H -0.222 1.222 35 H 0.431 0.569 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.262 0.738 41 H 0.442 0.558 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.103 0.897 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.934 -5.936 1.477 7.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.295 4.295 3 C -0.099 4.099 4 C -0.207 4.207 5 O -0.346 6.346 6 Si 0.637 3.363 7 C -0.793 4.793 8 S 2.800 3.200 9 O -0.967 6.967 10 O -0.968 6.968 11 N -0.861 5.861 12 C 0.035 3.965 13 H 0.100 0.900 14 C -0.156 4.156 15 C -0.147 4.147 16 C -0.019 4.019 17 H 0.132 0.868 18 C -0.080 4.080 19 N -0.178 5.178 20 N -0.190 5.190 21 C -0.120 4.120 22 N -0.187 5.187 23 C -0.154 4.154 24 C -0.178 4.178 25 C -0.178 4.178 26 C -0.176 4.176 27 S 0.457 5.543 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.217 0.783 33 H -0.210 1.210 34 H -0.146 1.146 35 H 0.269 0.731 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.278 0.722 41 H 0.284 0.716 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.114 0.886 45 H 0.092 0.908 46 H 0.115 0.885 47 H 0.122 0.878 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.273 -6.610 -0.189 7.873 hybrid contribution 1.166 1.410 1.683 2.485 sum -3.107 -5.200 1.494 6.239 Atomic orbital electron populations 1.20564 0.85711 1.05229 1.04396 1.24729 1.01500 0.94935 1.08296 1.18583 0.90255 0.97291 1.03775 1.25964 1.12234 0.90943 0.91582 1.86630 1.36830 1.91061 1.20031 0.92174 0.84305 0.82124 0.77689 1.29355 1.11814 1.13313 1.24854 1.01139 0.72680 0.73312 0.72826 1.93585 1.48057 1.80681 1.74373 1.93518 1.76087 1.47584 1.79618 1.55320 1.21608 1.80898 1.28294 1.21067 0.89777 0.94768 0.90872 0.90005 1.21781 0.98339 0.99301 0.96190 1.21556 0.98641 0.96614 0.97936 1.19846 0.93152 0.96553 0.92387 0.86761 1.25190 0.86280 1.01947 0.94587 1.74200 1.19403 1.17594 1.06596 1.74203 0.97364 1.19327 1.28140 1.27312 1.02949 1.00180 0.81531 1.44125 1.10518 1.49739 1.14345 1.21701 0.98212 0.99151 0.96376 1.22107 0.99195 0.97826 0.98701 1.24744 1.01698 0.95062 0.96341 1.20989 0.87632 1.03515 1.05436 1.84354 0.94067 1.07465 1.68406 0.87430 0.87626 0.87801 0.89706 0.78276 1.21006 1.14588 0.73064 0.90072 0.88682 0.91387 0.90680 0.72232 0.71559 0.91481 0.89945 0.88591 0.90787 0.88500 0.87804 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.88 8.21 71.24 0.58 1.47 16 2 C -0.18 0.56 6.14 24.59 0.15 0.71 16 3 C -0.09 0.01 4.22 -20.92 -0.09 -0.08 16 4 C -0.10 -0.17 1.94 71.23 0.14 -0.03 16 5 O -0.54 -2.66 12.63 -148.98 -1.88 -4.54 16 6 Si 0.74 -2.37 26.38 68.60 1.81 -0.56 16 7 C -0.69 -0.21 4.88 21.22 0.10 -0.10 16 8 S 2.71 5.70 5.23 -56.49 -0.30 5.40 16 9 O -0.98 -6.45 15.32 -128.00 -1.96 -8.41 16 10 O -0.98 -6.94 13.43 -127.34 -1.71 -8.65 16 11 N -1.10 5.11 5.47 -169.38 -0.93 4.18 16 12 C 0.14 -0.77 2.79 45.00 0.13 -0.65 16 13 H 0.08 -0.29 5.75 -2.39 -0.01 -0.30 16 14 C -0.12 0.81 5.45 30.60 0.17 0.98 16 15 C -0.11 0.55 5.19 30.59 0.16 0.71 16 16 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 17 H 0.11 -0.52 8.14 -2.39 -0.02 -0.54 16 18 C 0.19 0.26 6.99 137.98 0.96 1.22 16 19 N -0.34 -3.44 12.21 -50.15 -0.61 -4.05 16 20 N -0.35 -3.45 12.21 -59.98 -0.73 -4.18 16 21 C 0.17 -0.15 13.19 180.11 2.37 2.23 16 22 N -0.57 2.11 5.96 -189.85 -1.13 0.98 16 23 C -0.12 0.83 4.88 30.58 0.15 0.98 16 24 C -0.14 1.03 5.52 30.58 0.17 1.20 16 25 C -0.06 0.10 6.49 24.59 0.16 0.26 16 26 C -0.12 0.47 9.11 71.24 0.65 1.12 16 27 S 0.19 -0.80 23.31 -56.49 -1.32 -2.12 16 28 H 0.11 -1.29 8.14 -2.39 -0.02 -1.31 16 29 H 0.11 -0.92 7.45 -2.39 -0.02 -0.94 16 30 H 0.10 -1.21 4.51 -2.39 -0.01 -1.22 16 31 H 0.09 0.26 3.37 -2.39 -0.01 0.25 16 32 H 0.37 1.42 8.46 -74.06 -0.63 0.79 16 33 H -0.28 -0.76 7.11 99.48 0.71 -0.05 16 34 H -0.22 1.48 5.93 99.48 0.59 2.07 16 35 H 0.43 -3.87 8.84 -96.75 -0.85 -4.72 16 36 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 37 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 38 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 39 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H 0.26 -2.82 8.06 -2.91 -0.02 -2.84 16 41 H 0.44 -4.54 8.27 -92.71 -0.77 -5.30 16 42 H 0.07 -0.54 5.82 -2.39 -0.01 -0.55 16 43 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 44 H 0.10 -0.92 8.14 -2.39 -0.02 -0.94 16 45 H 0.07 -0.48 6.41 -2.39 -0.02 -0.49 16 46 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 47 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 48 H 0.09 -0.39 6.41 -2.38 -0.02 -0.40 16 Total: 0.00 -28.13 387.61 -4.25 -32.37 By element: Atomic # 1 Polarization: -19.12 SS G_CDS: -1.26 Total: -20.38 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 5.78 Total: 9.96 kcal Atomic # 7 Polarization: 0.33 SS G_CDS: -3.40 Total: -3.07 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -5.55 Total: -21.60 kcal Atomic # 14 Polarization: -2.37 SS G_CDS: 1.81 Total: -0.56 kcal Atomic # 16 Polarization: 4.89 SS G_CDS: -1.61 Total: 3.28 kcal Total: -28.13 -4.25 -32.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607854_15065288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.539 kcal (2) G-P(sol) polarization free energy of solvation -28.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds