Wall clock time and date at job start Mon Mar 8 2021 11:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86302 * 109.47238 * 2 1 4 4 C 1.50703 * 109.46829 * 240.00445 * 2 1 3 5 5 C 1.38218 * 119.99412 * 282.22531 * 4 2 1 6 6 S 1.76200 * 120.00214 * 359.97438 * 5 4 2 7 7 O 1.42101 * 106.40317 * 315.49026 * 6 5 4 8 8 O 1.42099 * 106.40249 * 182.57519 * 6 5 4 9 9 N 1.65595 * 107.21916 * 69.03191 * 6 5 4 10 10 C 1.46500 * 120.00069 * 64.50022 * 9 6 5 11 11 H 1.08997 * 109.47194 * 334.58418 * 10 9 6 12 12 C 1.53000 * 109.46933 * 94.58184 * 10 9 6 13 13 C 1.53004 * 109.46865 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47283 * 299.99928 * 13 12 10 15 15 H 1.08997 * 109.47308 * 300.00279 * 14 13 12 16 16 C 1.50703 * 109.47373 * 180.02562 * 14 13 12 17 17 N 1.30510 * 126.34705 * 94.68826 * 16 14 13 18 18 N 1.28597 * 109.67752 * 179.82782 * 17 16 14 19 19 C 1.30523 * 109.66552 * 0.44747 * 18 17 16 20 20 N 1.35487 * 107.31178 * 359.72970 * 19 18 17 21 21 C 1.53000 * 109.47111 * 60.00223 * 14 13 12 22 22 C 1.52999 * 109.46977 * 214.58323 * 10 9 6 23 23 C 1.38264 * 119.99668 * 180.25257 * 5 4 2 24 24 C 1.38216 * 119.99792 * 359.51980 * 23 5 4 25 25 C 1.38251 * 119.99878 * 0.45606 * 24 23 5 26 26 C 1.38218 * 120.00478 * 359.77286 * 25 24 23 27 27 H 0.96694 * 114.00290 * 184.56885 * 1 2 3 28 28 H 1.08998 * 109.47398 * 119.99934 * 2 1 3 29 29 H 1.48496 * 109.99819 * 58.68027 * 3 2 1 30 30 H 1.48498 * 109.99790 * 180.02562 * 3 2 1 31 31 H 0.96998 * 120.00038 * 244.50216 * 9 6 5 32 32 H 1.08992 * 109.47619 * 300.00053 * 12 10 9 33 33 H 1.08998 * 109.47061 * 60.00661 * 12 10 9 34 34 H 1.08997 * 109.47176 * 60.00287 * 13 12 10 35 35 H 1.09000 * 109.46805 * 180.02562 * 13 12 10 36 36 H 1.08006 * 126.34192 * 179.73059 * 19 18 17 37 37 H 0.96995 * 126.98591 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.47399 * 179.97438 * 21 14 13 39 39 H 1.08997 * 109.47509 * 59.99937 * 21 14 13 40 40 H 1.08997 * 109.46914 * 299.99629 * 22 10 9 41 41 H 1.09000 * 109.47416 * 60.00214 * 22 10 9 42 42 H 1.08000 * 119.99810 * 179.71987 * 23 5 4 43 43 H 1.07995 * 119.99808 * 180.25335 * 24 23 5 44 44 H 1.07999 * 119.99771 * 179.79388 * 25 24 23 45 45 H 1.07998 * 120.00064 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 1.9226 -2.0915 -1.2831 6 16 1.3249 -3.0216 0.0889 7 8 1.8862 -2.4276 1.2514 8 8 1.5020 -4.3909 -0.2469 9 7 -0.3093 -2.7694 0.1775 10 6 -1.1814 -3.2297 -0.9059 11 1 -0.6101 -3.2876 -1.8324 12 6 -1.7357 -4.6135 -0.5614 13 6 -2.6469 -5.0940 -1.6927 14 6 -3.8051 -4.1098 -1.8676 15 1 -4.3760 -4.0520 -0.9409 16 6 -4.7030 -4.5833 -2.9814 17 7 -5.7830 -5.3043 -2.8508 18 7 -6.3017 -5.5207 -4.0075 19 6 -5.5707 -4.9555 -4.9294 20 7 -4.5353 -4.3445 -4.3046 21 6 -3.2508 -2.7260 -2.2122 22 6 -2.3395 -2.2455 -1.0815 23 6 2.3882 -2.7434 -2.4100 24 6 2.8532 -2.0137 -3.4878 25 6 2.8613 -0.6322 -3.4354 26 6 2.4003 0.0195 -2.3070 27 1 -0.3933 -0.8805 0.0704 28 1 1.7924 -0.5138 0.8900 29 1 1.5355 2.4771 1.1921 30 1 3.5350 1.7701 -0.0006 31 1 -0.6893 -2.3169 0.9468 32 1 -0.9107 -5.3147 -0.4363 33 1 -2.3070 -4.5557 0.3651 34 1 -2.0760 -5.1518 -2.6194 35 1 -3.0422 -6.0797 -1.4470 36 1 -5.7568 -4.9719 -5.9932 37 1 -3.8192 -3.8392 -4.7201 38 1 -4.0759 -2.0248 -2.3372 39 1 -2.6799 -2.7836 -3.1389 40 1 -2.9108 -2.1878 -0.1550 41 1 -1.9446 -1.2597 -1.3270 42 1 2.3856 -3.8226 -2.4492 43 1 3.2131 -2.5228 -4.3696 44 1 3.2277 -0.0621 -4.2763 45 1 2.4071 1.0986 -2.2660 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607854_2726874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:33:01 Heat of formation + Delta-G solvation = 4.906464 kcal Electronic energy + Delta-G solvation = -32262.421064 eV Core-core repulsion = 27988.880055 eV Total energy + Delta-G solvation = -4273.541008 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.124 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.14792 -40.95640 -40.33443 -38.78362 -37.70911 -37.11185 -36.12017 -34.59570 -33.01081 -32.61612 -32.24364 -32.09002 -29.41378 -27.10251 -24.82262 -24.61166 -24.20634 -23.43189 -23.01595 -22.24259 -21.47596 -20.71609 -19.61290 -19.42211 -18.83388 -18.36842 -17.62207 -17.38247 -16.91489 -16.86248 -16.43185 -16.21377 -16.06890 -15.83346 -15.52605 -15.45294 -15.24749 -15.12632 -14.56928 -14.52335 -14.23724 -13.88162 -13.70911 -13.55180 -13.51041 -13.29579 -13.27136 -13.03254 -12.84117 -12.65811 -12.47862 -12.38029 -12.26443 -12.09697 -11.94315 -11.82536 -11.71434 -11.55747 -11.33438 -11.21772 -10.76741 -10.68608 -10.21726 -10.20110 -4.99727 -0.96933 -0.50236 -0.04868 0.79010 1.22334 1.53642 1.62222 1.73940 1.91060 1.92593 2.14369 2.44675 2.99686 3.06657 3.23087 3.23762 3.34414 3.48373 3.57638 3.60405 3.65827 3.71247 3.80542 3.84704 3.87522 3.97476 4.02803 4.07864 4.13546 4.16500 4.28999 4.31894 4.38177 4.43240 4.49923 4.58369 4.59061 4.71124 4.76064 4.79373 4.85728 4.95517 4.95787 5.04856 5.06896 5.10012 5.14178 5.47749 5.51486 6.00826 6.17563 7.74309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.146 4.146 3 Si 0.755 3.245 4 C -0.006 4.006 5 C -0.675 4.675 6 S 2.685 3.315 7 O -0.951 6.951 8 O -0.943 6.943 9 N -1.115 6.115 10 C 0.149 3.851 11 H 0.089 0.911 12 C -0.139 4.139 13 C -0.109 4.109 14 C -0.005 4.005 15 H 0.112 0.888 16 C 0.186 3.814 17 N -0.290 5.290 18 N -0.295 5.295 19 C 0.154 3.846 20 N -0.582 5.582 21 C -0.114 4.114 22 C -0.130 4.130 23 C -0.018 4.018 24 C -0.136 4.136 25 C -0.052 4.052 26 C -0.129 4.129 27 H 0.353 0.647 28 H 0.119 0.881 29 H -0.248 1.248 30 H -0.248 1.248 31 H 0.422 0.578 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.222 0.778 37 H 0.428 0.572 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.147 0.853 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.016 4.734 -6.719 8.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.254 4.254 3 Si 0.651 3.349 4 C -0.008 4.008 5 C -0.762 4.762 6 S 2.775 3.225 7 O -0.941 6.941 8 O -0.933 6.933 9 N -0.879 5.879 10 C 0.043 3.957 11 H 0.107 0.893 12 C -0.178 4.178 13 C -0.148 4.148 14 C -0.026 4.026 15 H 0.130 0.870 16 C -0.083 4.083 17 N -0.131 5.131 18 N -0.135 5.135 19 C -0.135 4.135 20 N -0.195 5.195 21 C -0.153 4.153 22 C -0.169 4.169 23 C -0.037 4.037 24 C -0.155 4.155 25 C -0.071 4.071 26 C -0.147 4.147 27 H 0.208 0.792 28 H 0.136 0.864 29 H -0.173 1.173 30 H -0.172 1.172 31 H 0.260 0.740 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.239 0.761 37 H 0.268 0.732 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.165 0.835 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.863 4.443 -5.217 7.102 hybrid contribution 1.176 -0.078 -0.719 1.381 sum 3.039 4.365 -5.937 7.971 Atomic orbital electron populations 1.86886 1.16081 1.34756 1.96809 1.26420 0.85521 1.16637 0.96791 0.93114 0.78964 0.74773 0.88005 1.20001 0.93122 0.91751 0.95890 1.30673 1.19731 1.06267 1.19541 1.02257 0.72303 0.74090 0.73807 1.93580 1.75897 1.78036 1.46589 1.93606 1.84531 1.30716 1.84466 1.56008 1.25894 1.74687 1.31348 1.20986 0.91785 0.94540 0.88384 0.89262 1.22101 1.00406 0.95939 0.99329 1.21574 0.94930 0.99129 0.99198 1.19816 0.93758 0.94767 0.94278 0.86981 1.24855 0.98158 1.00591 0.84672 1.74310 1.06685 1.14829 1.17234 1.74321 1.24095 1.20016 0.95035 1.26584 0.87414 0.97740 1.01773 1.44123 1.24392 1.43125 1.07816 1.21591 0.99557 0.95548 0.98640 1.21917 0.95857 0.98981 1.00157 1.21055 0.91331 1.00778 0.90575 1.21405 1.00630 0.94348 0.99140 1.21574 0.93303 0.94847 0.97329 1.21169 1.00229 0.99954 0.93347 0.79240 0.86368 1.17277 1.17205 0.73998 0.89411 0.90172 0.91500 0.90039 0.76132 0.73224 0.90203 0.91611 0.89847 0.89659 0.83542 0.84417 0.84303 0.84112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.05 12.60 -35.23 -0.44 -0.40 16 2 C -0.15 -0.11 2.08 36.01 0.07 -0.03 16 3 Si 0.75 -0.34 30.22 -169.99 -5.14 -5.47 16 4 C -0.01 0.00 5.25 -104.62 -0.55 -0.55 16 5 C -0.67 -0.06 5.71 -39.58 -0.23 -0.28 16 6 S 2.68 1.82 4.99 -107.50 -0.54 1.28 16 7 O -0.95 -3.44 15.17 -57.17 -0.87 -4.31 16 8 O -0.94 -2.57 16.20 -57.17 -0.93 -3.49 16 9 N -1.11 3.12 3.24 -4.89 -0.02 3.10 16 10 C 0.15 -0.58 2.64 -67.93 -0.18 -0.76 16 11 H 0.09 -0.41 7.82 -51.93 -0.41 -0.82 16 12 C -0.14 0.42 5.53 -26.73 -0.15 0.27 16 13 C -0.11 0.32 5.19 -26.73 -0.14 0.19 16 14 C -0.01 0.02 2.66 -91.77 -0.24 -0.23 16 15 H 0.11 -0.29 8.14 -51.93 -0.42 -0.71 16 16 C 0.19 -0.03 6.99 -154.99 -1.08 -1.11 16 17 N -0.29 -1.23 12.21 32.80 0.40 -0.83 16 18 N -0.30 -1.22 12.21 29.69 0.36 -0.86 16 19 C 0.15 -0.12 13.19 -89.95 -1.19 -1.31 16 20 N -0.58 1.56 5.96 -11.36 -0.07 1.49 16 21 C -0.11 0.57 4.97 -26.75 -0.13 0.44 16 22 C -0.13 0.66 5.01 -26.75 -0.13 0.52 16 23 C -0.02 0.02 9.55 -39.58 -0.38 -0.36 16 24 C -0.14 0.33 10.05 -39.58 -0.40 -0.07 16 25 C -0.05 0.14 10.05 -39.58 -0.40 -0.25 16 26 C -0.13 0.21 8.66 -39.58 -0.34 -0.13 16 27 H 0.35 -0.80 3.28 45.56 0.15 -0.65 16 28 H 0.12 0.23 5.04 -51.93 -0.26 -0.03 16 29 H -0.25 -0.54 7.11 56.52 0.40 -0.14 16 30 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 31 H 0.42 -1.89 7.72 -34.47 -0.27 -2.16 16 32 H 0.09 -0.13 7.59 -51.93 -0.39 -0.53 16 33 H 0.08 -0.28 8.14 -51.93 -0.42 -0.71 16 34 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 35 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 36 H 0.22 -1.13 8.06 -52.48 -0.42 -1.55 16 37 H 0.43 -2.71 8.29 -40.82 -0.34 -3.05 16 38 H 0.08 -0.37 8.14 -51.93 -0.42 -0.79 16 39 H 0.07 -0.41 7.52 -51.93 -0.39 -0.80 16 40 H 0.08 -0.46 8.14 -51.93 -0.42 -0.88 16 41 H 0.08 -0.43 7.36 -51.93 -0.38 -0.81 16 42 H 0.15 -0.29 7.34 -52.49 -0.39 -0.68 16 43 H 0.14 -0.63 8.06 -52.49 -0.42 -1.06 16 44 H 0.14 -0.74 8.06 -52.49 -0.42 -1.17 16 45 H 0.14 -0.56 5.23 -52.49 -0.27 -0.84 16 LS Contribution 364.74 15.07 5.50 5.50 Total: 0.00 -12.96 364.74 -13.15 -26.11 By element: Atomic # 1 Polarization: -12.49 SS G_CDS: -5.95 Total: -18.44 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -5.46 Total: -3.68 kcal Atomic # 7 Polarization: 2.22 SS G_CDS: 0.68 Total: 2.90 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -2.24 Total: -8.20 kcal Atomic # 14 Polarization: -0.34 SS G_CDS: -5.14 Total: -5.47 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -0.54 Total: 1.28 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -12.96 -13.15 -26.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607854_2726874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.012 kcal (2) G-P(sol) polarization free energy of solvation -12.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds