Wall clock time and date at job start Mon Mar 8 2021 11:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86302 * 109.47238 * 2 1 4 4 C 1.50703 * 109.46829 * 240.00445 * 2 1 3 5 5 C 1.38218 * 119.99412 * 282.22531 * 4 2 1 6 6 S 1.76200 * 120.00214 * 359.97438 * 5 4 2 7 7 O 1.42101 * 106.40317 * 315.49026 * 6 5 4 8 8 O 1.42099 * 106.40249 * 182.57519 * 6 5 4 9 9 N 1.65595 * 107.21916 * 69.03191 * 6 5 4 10 10 C 1.46500 * 120.00069 * 64.50022 * 9 6 5 11 11 H 1.08997 * 109.47194 * 334.58418 * 10 9 6 12 12 C 1.53000 * 109.46933 * 94.58184 * 10 9 6 13 13 C 1.53004 * 109.46865 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47283 * 299.99928 * 13 12 10 15 15 H 1.08997 * 109.47308 * 300.00279 * 14 13 12 16 16 C 1.50703 * 109.47373 * 180.02562 * 14 13 12 17 17 N 1.30510 * 126.34705 * 94.68826 * 16 14 13 18 18 N 1.28597 * 109.67752 * 179.82782 * 17 16 14 19 19 C 1.30523 * 109.66552 * 0.44747 * 18 17 16 20 20 N 1.35487 * 107.31178 * 359.72970 * 19 18 17 21 21 C 1.53000 * 109.47111 * 60.00223 * 14 13 12 22 22 C 1.52999 * 109.46977 * 214.58323 * 10 9 6 23 23 C 1.38264 * 119.99668 * 180.25257 * 5 4 2 24 24 C 1.38216 * 119.99792 * 359.51980 * 23 5 4 25 25 C 1.38251 * 119.99878 * 0.45606 * 24 23 5 26 26 C 1.38218 * 120.00478 * 359.77286 * 25 24 23 27 27 H 0.96694 * 114.00290 * 184.56885 * 1 2 3 28 28 H 1.08998 * 109.47398 * 119.99934 * 2 1 3 29 29 H 1.48496 * 109.99819 * 58.68027 * 3 2 1 30 30 H 1.48498 * 109.99790 * 180.02562 * 3 2 1 31 31 H 0.96998 * 120.00038 * 244.50216 * 9 6 5 32 32 H 1.08992 * 109.47619 * 300.00053 * 12 10 9 33 33 H 1.08998 * 109.47061 * 60.00661 * 12 10 9 34 34 H 1.08997 * 109.47176 * 60.00287 * 13 12 10 35 35 H 1.09000 * 109.46805 * 180.02562 * 13 12 10 36 36 H 1.08006 * 126.34192 * 179.73059 * 19 18 17 37 37 H 0.96995 * 126.98591 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.47399 * 179.97438 * 21 14 13 39 39 H 1.08997 * 109.47509 * 59.99937 * 21 14 13 40 40 H 1.08997 * 109.46914 * 299.99629 * 22 10 9 41 41 H 1.09000 * 109.47416 * 60.00214 * 22 10 9 42 42 H 1.08000 * 119.99810 * 179.71987 * 23 5 4 43 43 H 1.07995 * 119.99808 * 180.25335 * 24 23 5 44 44 H 1.07999 * 119.99771 * 179.79388 * 25 24 23 45 45 H 1.07998 * 120.00064 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 1.9226 -2.0915 -1.2831 6 16 1.3249 -3.0216 0.0889 7 8 1.8862 -2.4276 1.2514 8 8 1.5020 -4.3909 -0.2469 9 7 -0.3093 -2.7694 0.1775 10 6 -1.1814 -3.2297 -0.9059 11 1 -0.6101 -3.2876 -1.8324 12 6 -1.7357 -4.6135 -0.5614 13 6 -2.6469 -5.0940 -1.6927 14 6 -3.8051 -4.1098 -1.8676 15 1 -4.3760 -4.0520 -0.9409 16 6 -4.7030 -4.5833 -2.9814 17 7 -5.7830 -5.3043 -2.8508 18 7 -6.3017 -5.5207 -4.0075 19 6 -5.5707 -4.9555 -4.9294 20 7 -4.5353 -4.3445 -4.3046 21 6 -3.2508 -2.7260 -2.2122 22 6 -2.3395 -2.2455 -1.0815 23 6 2.3882 -2.7434 -2.4100 24 6 2.8532 -2.0137 -3.4878 25 6 2.8613 -0.6322 -3.4354 26 6 2.4003 0.0195 -2.3070 27 1 -0.3933 -0.8805 0.0704 28 1 1.7924 -0.5138 0.8900 29 1 1.5355 2.4771 1.1921 30 1 3.5350 1.7701 -0.0006 31 1 -0.6893 -2.3169 0.9468 32 1 -0.9107 -5.3147 -0.4363 33 1 -2.3070 -4.5557 0.3651 34 1 -2.0760 -5.1518 -2.6194 35 1 -3.0422 -6.0797 -1.4470 36 1 -5.7568 -4.9719 -5.9932 37 1 -3.8192 -3.8392 -4.7201 38 1 -4.0759 -2.0248 -2.3372 39 1 -2.6799 -2.7836 -3.1389 40 1 -2.9108 -2.1878 -0.1550 41 1 -1.9446 -1.2597 -1.3270 42 1 2.3856 -3.8226 -2.4492 43 1 3.2131 -2.5228 -4.3696 44 1 3.2277 -0.0621 -4.2763 45 1 2.4071 1.0986 -2.2660 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607854_2726874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:33:00 Heat of formation + Delta-G solvation = 1.379761 kcal Electronic energy + Delta-G solvation = -32262.573993 eV Core-core repulsion = 27988.880055 eV Total energy + Delta-G solvation = -4273.693938 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.124 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.11333 -40.80516 -40.10200 -38.85150 -37.67393 -37.24209 -35.97630 -34.53297 -32.86801 -32.44312 -32.12472 -31.83775 -29.29383 -27.01970 -24.67468 -24.44992 -23.96384 -23.31292 -22.89914 -22.13005 -21.27502 -20.63096 -19.52314 -19.28250 -18.80706 -18.26886 -17.54386 -17.23998 -16.85110 -16.78603 -16.35350 -16.14271 -15.93859 -15.68985 -15.35054 -15.23509 -15.03740 -15.02162 -14.51018 -14.37988 -14.05120 -13.79544 -13.61390 -13.50948 -13.41847 -13.36400 -13.22736 -12.84185 -12.73997 -12.52596 -12.33611 -12.18485 -12.11810 -12.09217 -11.79931 -11.71829 -11.52943 -11.44992 -11.27966 -11.19279 -10.58811 -10.51366 -10.21357 -10.06338 -4.98651 -0.95315 -0.37799 0.12130 0.89640 1.23806 1.55771 1.69614 1.88627 1.91809 1.93655 2.26199 2.50540 3.08426 3.18321 3.31962 3.52854 3.53109 3.65438 3.75039 3.85339 3.88308 3.96411 4.06720 4.13618 4.15705 4.17351 4.26152 4.33510 4.36964 4.39937 4.45630 4.46449 4.54828 4.56078 4.77607 4.78961 4.83347 4.95115 5.06818 5.07891 5.10004 5.15866 5.17847 5.23062 5.28437 5.30964 5.40330 5.72797 5.73841 6.28532 6.30098 7.74749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.538 6.538 2 C -0.162 4.162 3 Si 0.831 3.169 4 C -0.023 4.023 5 C -0.681 4.681 6 S 2.691 3.309 7 O -0.988 6.988 8 O -0.972 6.972 9 N -1.105 6.105 10 C 0.148 3.852 11 H 0.101 0.899 12 C -0.138 4.138 13 C -0.103 4.103 14 C -0.001 4.001 15 H 0.104 0.896 16 C 0.194 3.806 17 N -0.348 5.348 18 N -0.357 5.357 19 C 0.169 3.831 20 N -0.566 5.566 21 C -0.108 4.108 22 C -0.126 4.126 23 C -0.031 4.031 24 C -0.135 4.135 25 C -0.048 4.048 26 C -0.136 4.136 27 H 0.361 0.639 28 H 0.100 0.900 29 H -0.290 1.290 30 H -0.268 1.268 31 H 0.429 0.571 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.261 0.739 37 H 0.447 0.553 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.150 0.850 43 H 0.163 0.837 44 H 0.171 0.829 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.775 6.308 -9.335 11.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.268 4.268 3 Si 0.731 3.269 4 C -0.025 4.025 5 C -0.771 4.771 6 S 2.784 3.216 7 O -0.979 6.979 8 O -0.961 6.961 9 N -0.872 5.872 10 C 0.042 3.958 11 H 0.119 0.881 12 C -0.177 4.177 13 C -0.142 4.142 14 C -0.022 4.022 15 H 0.123 0.877 16 C -0.077 4.077 17 N -0.187 5.187 18 N -0.196 5.196 19 C -0.121 4.121 20 N -0.181 5.181 21 C -0.147 4.147 22 C -0.165 4.165 23 C -0.050 4.050 24 C -0.154 4.154 25 C -0.065 4.065 26 C -0.154 4.154 27 H 0.216 0.784 28 H 0.118 0.882 29 H -0.217 1.217 30 H -0.194 1.194 31 H 0.269 0.731 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.277 0.723 37 H 0.291 0.709 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.167 0.833 43 H 0.180 0.820 44 H 0.189 0.811 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.615 5.989 -7.826 10.196 hybrid contribution 0.963 -0.575 0.063 1.123 sum 3.578 5.414 -7.762 10.118 Atomic orbital electron populations 1.86835 1.15795 1.35547 1.96813 1.26581 0.85939 1.17533 0.96792 0.92362 0.76422 0.72272 0.85863 1.20019 0.94437 0.91815 0.96259 1.30421 1.20990 1.06284 1.19407 1.01713 0.72887 0.73499 0.73480 1.93533 1.77161 1.78470 1.48688 1.93566 1.85283 1.32459 1.84815 1.55750 1.24694 1.74624 1.32134 1.21137 0.92115 0.94242 0.88318 0.88126 1.22066 0.99831 0.96217 0.99579 1.21491 0.94911 0.98203 0.99627 1.19864 0.93131 0.95923 0.93240 0.87749 1.25178 0.97225 0.99213 0.86087 1.74187 1.09011 1.17313 1.18237 1.74197 1.26561 1.22859 0.95986 1.27288 0.86465 0.95610 1.02736 1.44039 1.24505 1.42693 1.06850 1.21576 0.99739 0.93882 0.99484 1.21901 0.95231 0.98767 1.00557 1.21247 0.91717 1.01219 0.90827 1.21756 0.99562 0.94759 0.99288 1.21985 0.91941 0.94921 0.97689 1.21500 0.99675 1.01108 0.93105 0.78356 0.88246 1.21726 1.19385 0.73079 0.91100 0.89946 0.90410 0.91926 0.72291 0.70925 0.89887 0.89538 0.89373 0.88863 0.83250 0.81982 0.81132 0.82000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.08 12.60 -148.98 -1.88 -1.79 16 2 C -0.16 -0.31 2.08 71.24 0.15 -0.16 16 3 Si 0.83 -0.66 30.22 68.60 2.07 1.41 16 4 C -0.02 0.00 5.25 -19.87 -0.10 -0.10 16 5 C -0.68 -0.21 5.71 22.27 0.13 -0.08 16 6 S 2.69 7.42 4.99 -56.49 -0.28 7.14 16 7 O -0.99 -9.37 15.17 -128.00 -1.94 -11.31 16 8 O -0.97 -6.90 16.20 -128.00 -2.07 -8.98 16 9 N -1.11 5.35 3.24 -169.39 -0.55 4.81 16 10 C 0.15 -1.17 2.64 44.99 0.12 -1.06 16 11 H 0.10 -1.01 7.82 -2.39 -0.02 -1.03 16 12 C -0.14 0.73 5.53 30.60 0.17 0.90 16 13 C -0.10 0.56 5.19 30.59 0.16 0.72 16 14 C 0.00 0.00 2.66 -11.54 -0.03 -0.03 16 15 H 0.10 -0.45 8.14 -2.39 -0.02 -0.46 16 16 C 0.19 -0.02 6.99 137.98 0.96 0.94 16 17 N -0.35 -3.49 12.21 -50.15 -0.61 -4.11 16 18 N -0.36 -3.36 12.21 -59.99 -0.73 -4.10 16 19 C 0.17 -0.39 13.19 180.11 2.37 1.98 16 20 N -0.57 3.69 5.96 -189.86 -1.13 2.56 16 21 C -0.11 1.23 4.97 30.58 0.15 1.38 16 22 C -0.13 1.40 5.01 30.58 0.15 1.55 16 23 C -0.03 0.08 9.55 22.27 0.21 0.30 16 24 C -0.14 0.95 10.05 22.27 0.22 1.17 16 25 C -0.05 0.39 10.05 22.27 0.22 0.62 16 26 C -0.14 0.69 8.66 22.27 0.19 0.88 16 27 H 0.36 -1.59 3.28 -74.06 -0.24 -1.83 16 28 H 0.10 0.56 5.04 -2.39 -0.01 0.55 16 29 H -0.29 -1.67 7.11 99.48 0.71 -0.96 16 30 H -0.27 -0.60 7.11 99.48 0.71 0.11 16 31 H 0.43 -3.46 7.72 -96.75 -0.75 -4.20 16 32 H 0.07 -0.10 7.59 -2.39 -0.02 -0.12 16 33 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 34 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 35 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.26 -3.18 8.06 -2.91 -0.02 -3.21 16 37 H 0.45 -6.69 8.29 -92.71 -0.77 -7.46 16 38 H 0.08 -0.91 8.14 -2.39 -0.02 -0.93 16 39 H 0.09 -1.32 7.52 -2.39 -0.02 -1.34 16 40 H 0.09 -1.03 8.14 -2.39 -0.02 -1.05 16 41 H 0.09 -1.10 7.36 -2.39 -0.02 -1.12 16 42 H 0.15 -0.60 7.34 -2.91 -0.02 -0.62 16 43 H 0.16 -1.99 8.06 -2.91 -0.02 -2.01 16 44 H 0.17 -2.53 8.06 -2.91 -0.02 -2.55 16 45 H 0.16 -1.66 5.23 -2.91 -0.02 -1.67 16 Total: 0.00 -33.80 364.74 -2.69 -36.49 By element: Atomic # 1 Polarization: -30.49 SS G_CDS: -0.65 Total: -31.14 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 5.08 Total: 9.02 kcal Atomic # 7 Polarization: 2.18 SS G_CDS: -3.03 Total: -0.84 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -5.89 Total: -22.08 kcal Atomic # 14 Polarization: -0.66 SS G_CDS: 2.07 Total: 1.41 kcal Atomic # 16 Polarization: 7.42 SS G_CDS: -0.28 Total: 7.14 kcal Total: -33.80 -2.69 -36.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607854_2726874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.873 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds