Wall clock time and date at job start Mon Mar 8 2021 11:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86302 * 109.47026 * 2 1 4 4 H 1.48505 * 109.46984 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47263 * 300.00150 * 3 2 1 6 6 H 1.48499 * 109.46564 * 60.00367 * 3 2 1 7 7 C 1.50694 * 109.47362 * 120.00381 * 2 1 3 8 8 C 1.38234 * 120.00117 * 64.99828 * 7 2 1 9 9 C 1.38236 * 120.00072 * 180.02562 * 8 7 2 10 10 C 1.38232 * 120.00326 * 0.02562 * 9 8 7 11 11 S 1.76193 * 120.00400 * 179.97438 * 10 9 8 12 12 O 1.42105 * 106.40403 * 203.53958 * 11 10 9 13 13 O 1.42098 * 106.40145 * 336.45887 * 11 10 9 14 14 N 1.65606 * 107.21910 * 90.00069 * 11 10 9 15 15 C 1.43971 * 122.79468 * 269.70738 * 14 11 10 16 16 C 1.55062 * 110.22801 * 291.39381 * 15 14 11 17 17 C 1.56823 * 111.16476 * 322.43972 * 16 15 14 18 18 Si 1.83045 * 113.77432 * 319.77953 * 17 16 15 19 19 C 1.87584 * 112.74856 * 208.05905 * 18 17 16 20 20 C 1.56446 * 98.93785 * 100.63237 * 19 18 17 21 21 C 1.53802 * 109.81241 * 39.21228 * 20 19 18 22 22 C 1.55749 * 111.39873 * 312.28748 * 21 20 19 23 23 C 1.88537 * 109.76779 * 84.96219 * 18 17 16 24 24 C 1.46418 * 104.57353 * 294.18544 * 23 18 17 25 25 C 1.38241 * 119.99609 * 0.24951 * 10 9 8 26 26 C 1.38235 * 120.00049 * 359.47361 * 25 10 9 27 27 H 0.96698 * 114.00270 * 299.99484 * 1 2 3 28 28 H 1.09004 * 109.47088 * 240.00543 * 2 1 3 29 29 H 1.08000 * 120.00363 * 359.97438 * 8 7 2 30 30 H 1.07999 * 119.99710 * 179.97438 * 9 8 7 31 31 H 1.09004 * 109.38450 * 51.30983 * 15 14 11 32 32 H 1.09000 * 109.38188 * 171.00074 * 15 14 11 33 33 H 1.08998 * 109.15451 * 202.02610 * 16 15 14 34 34 H 1.08992 * 109.14063 * 82.85333 * 16 15 14 35 35 H 1.09002 * 108.62739 * 198.66198 * 17 16 15 36 36 H 1.09008 * 108.50900 * 80.80658 * 17 16 15 37 37 H 1.09002 * 111.49795 * 218.05896 * 19 18 17 38 38 H 1.09000 * 111.50364 * 343.19336 * 19 18 17 39 39 H 1.08999 * 109.41088 * 279.10961 * 20 19 18 40 40 H 1.09001 * 109.36914 * 159.28817 * 20 19 18 41 41 H 1.08998 * 109.10567 * 191.77700 * 21 20 19 42 42 H 1.09000 * 109.01057 * 72.73959 * 21 20 19 43 43 H 1.08998 * 111.15291 * 270.11098 * 22 21 20 44 44 H 1.09000 * 111.19106 * 145.88710 * 22 21 20 45 45 H 1.09010 * 110.40719 * 175.43081 * 23 18 17 46 46 H 1.08995 * 110.41334 * 52.95408 * 23 18 17 47 47 H 1.09003 * 108.76632 * 296.84168 * 24 23 18 48 48 H 1.08994 * 108.76279 * 178.69647 * 24 23 18 49 49 H 1.08001 * 120.00131 * 179.72267 * 25 10 9 50 50 H 1.07997 * 120.00585 * 180.27286 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 1 3.5350 1.7565 0.0006 5 1 1.5549 2.4565 -1.2124 6 1 1.5549 2.4564 1.2126 7 6 1.9313 -0.7104 1.2303 8 6 1.6847 -2.0602 1.3982 9 6 2.1451 -2.7118 2.5271 10 6 2.8516 -2.0136 3.4884 11 16 3.4379 -2.8439 4.9276 12 8 3.6035 -1.8470 5.9266 13 8 2.6084 -3.9850 5.0983 14 7 4.9533 -3.4149 4.5811 15 6 5.1855 -4.7214 4.0226 16 6 4.8398 -5.8183 5.0626 17 6 5.2581 -5.3792 6.5089 18 14 6.8673 -4.5097 6.5796 19 6 7.7387 -4.7292 8.2262 20 6 8.7621 -5.8383 7.8137 21 6 9.2961 -5.5548 6.3994 22 6 8.1383 -5.2316 5.4091 23 6 6.6177 -2.6760 6.2192 24 6 6.1753 -2.6316 4.8242 25 6 3.0933 -0.6625 3.3233 26 6 2.6379 -0.0121 2.1917 27 1 -0.3933 0.4416 0.7650 28 1 1.7923 -0.5138 -0.8901 29 1 1.1317 -2.6056 0.6478 30 1 1.9521 -3.7663 2.6584 31 1 4.5573 -4.8552 3.1418 32 1 6.2330 -4.8109 3.7350 33 1 5.3660 -6.7366 4.8022 34 1 3.7660 -6.0042 5.0425 35 1 5.3138 -6.2664 7.1397 36 1 4.4876 -4.7184 6.9064 37 1 8.2442 -3.8145 8.5357 38 1 7.0539 -5.0840 8.9964 39 1 8.2681 -6.8098 7.8264 40 1 9.5923 -5.8448 8.5199 41 1 9.8384 -6.4297 6.0409 42 1 9.9777 -4.7052 6.4409 43 1 7.7642 -6.1375 4.9321 44 1 8.4493 -4.4981 4.6652 45 1 7.5561 -2.1341 6.3377 46 1 5.8519 -2.2606 6.8743 47 1 6.9726 -3.0205 4.1909 48 1 5.9869 -1.5939 4.5490 49 1 3.6414 -0.1160 4.0764 50 1 2.8305 1.0424 2.0605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607860_13421422.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:34:37 Heat of formation + Delta-G solvation = -110.625549 kcal Electronic energy + Delta-G solvation = -30728.097941 eV Core-core repulsion = 26777.608000 eV Total energy + Delta-G solvation = -3950.489941 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 369.139 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.75815 -39.03693 -38.28912 -37.80593 -36.80234 -36.23379 -33.88084 -33.08731 -32.27571 -31.02226 -29.84409 -27.28777 -26.94495 -24.99145 -24.20591 -23.61553 -23.04144 -22.45575 -21.05505 -20.09651 -18.96935 -18.37284 -18.29070 -17.44176 -17.07466 -16.55901 -16.24365 -16.14440 -15.96666 -15.75175 -15.68930 -15.43514 -15.31504 -15.21372 -14.75828 -14.60505 -14.30894 -14.17242 -14.05214 -13.90286 -13.66785 -13.31367 -13.03093 -12.98242 -12.70132 -12.69790 -12.62675 -12.57913 -12.46608 -12.34981 -12.29764 -12.16149 -11.91417 -11.84248 -11.77134 -11.56954 -11.41601 -10.68494 -10.53912 -10.47098 -10.40548 -10.26742 -10.20157 -10.08668 -0.74811 -0.38101 0.11783 0.96086 1.28997 1.36833 1.62736 1.71439 1.77026 1.86931 1.92148 2.31692 2.57068 2.74037 3.18532 3.24105 3.40933 3.60228 3.66520 3.72019 3.99594 4.04139 4.06898 4.07422 4.08813 4.21634 4.25770 4.32134 4.35080 4.44141 4.52155 4.56258 4.57166 4.58726 4.63819 4.67522 4.72469 4.76934 4.87759 4.91283 4.96367 5.02709 5.05461 5.08886 5.15119 5.16576 5.28669 5.34422 5.37424 5.42032 5.47258 5.50378 5.58661 5.62742 6.34514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.090 4.090 3 Si 0.948 3.052 4 H -0.247 1.247 5 H -0.250 1.250 6 H -0.249 1.249 7 C -0.065 4.065 8 C -0.111 4.111 9 C -0.019 4.019 10 C -0.676 4.676 11 S 2.695 3.305 12 O -0.948 6.948 13 O -0.944 6.944 14 N -0.993 5.993 15 C 0.107 3.893 16 C -0.132 4.132 17 C -0.411 4.411 18 Si 0.986 3.014 19 C -0.408 4.408 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.403 4.403 23 C -0.434 4.434 24 C 0.132 3.868 25 C -0.015 4.015 26 C -0.147 4.147 27 H 0.379 0.621 28 H 0.124 0.876 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.070 0.930 49 H 0.144 0.856 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.400 0.335 -3.154 4.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.200 4.200 3 Si 0.770 3.230 4 H -0.171 1.171 5 H -0.173 1.173 6 H -0.172 1.172 7 C -0.065 4.065 8 C -0.130 4.130 9 C -0.038 4.038 10 C -0.763 4.763 11 S 2.785 3.215 12 O -0.938 6.938 13 O -0.934 6.934 14 N -0.830 5.830 15 C -0.019 4.019 16 C -0.171 4.171 17 C -0.497 4.497 18 Si 1.180 2.820 19 C -0.494 4.494 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.489 4.489 23 C -0.520 4.520 24 C 0.008 3.992 25 C -0.034 4.034 26 C -0.166 4.166 27 H 0.226 0.774 28 H 0.142 0.858 29 H 0.157 0.843 30 H 0.161 0.839 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.117 0.883 46 H 0.113 0.887 47 H 0.104 0.896 48 H 0.088 0.912 49 H 0.162 0.838 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.273 0.783 -2.974 4.491 hybrid contribution -0.154 -0.007 -0.113 0.191 sum 3.119 0.776 -3.087 4.456 Atomic orbital electron populations 1.86546 1.16538 1.81614 1.49180 1.25148 0.85599 1.11121 0.98145 0.85682 0.80754 0.74893 0.81662 1.17093 1.17320 1.17248 1.20717 0.95057 0.95032 0.95713 1.21196 0.99716 0.93903 0.98147 1.21025 0.91387 1.00136 0.91272 1.31150 1.15791 1.06401 1.22917 1.02054 0.72074 0.73517 0.73807 1.93594 1.85380 1.60538 1.54307 1.93598 1.65651 1.49378 1.84804 1.57481 1.21900 1.24387 1.79223 1.21527 1.03504 0.80955 0.95961 1.22706 1.03485 0.97818 0.93123 1.26483 1.15989 1.07972 0.99294 0.79886 0.66758 0.67220 0.68178 1.26652 1.06092 1.01852 1.14850 1.22046 0.99016 0.98606 0.96294 1.21840 0.98110 1.01776 0.93781 1.26575 1.09746 1.06752 1.05874 1.25578 1.05843 1.20237 1.00386 1.19722 0.86062 0.95884 0.97499 1.20886 0.94148 0.92147 0.96207 1.21217 1.00310 1.00222 0.94811 0.77380 0.85814 0.84282 0.83854 0.90979 0.88633 0.90702 0.89724 0.90291 0.91563 0.90055 0.90407 0.91893 0.91688 0.91918 0.91979 0.90171 0.90219 0.88331 0.88655 0.89621 0.91209 0.83837 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.31 12.83 -35.23 -0.45 -0.14 16 2 C -0.09 0.13 2.80 36.00 0.10 0.23 16 3 Si 0.95 -1.48 25.14 -169.99 -4.27 -5.76 16 4 H -0.25 0.29 7.11 56.52 0.40 0.69 16 5 H -0.25 0.01 7.11 56.52 0.40 0.41 16 6 H -0.25 0.33 7.04 56.52 0.40 0.73 16 7 C -0.06 0.02 5.35 -104.63 -0.56 -0.54 16 8 C -0.11 0.01 9.69 -39.58 -0.38 -0.37 16 9 C -0.02 -0.01 9.52 -39.58 -0.38 -0.39 16 10 C -0.68 -0.75 5.97 -39.58 -0.24 -0.98 16 11 S 2.70 5.30 5.41 -107.50 -0.58 4.72 16 12 O -0.95 -4.01 15.70 -57.17 -0.90 -4.91 16 13 O -0.94 -3.78 14.83 -57.17 -0.85 -4.63 16 14 N -0.99 0.80 2.10 -117.98 -0.25 0.55 16 15 C 0.11 -0.23 5.36 -4.30 -0.02 -0.25 16 16 C -0.13 0.09 5.48 -23.57 -0.13 -0.04 16 17 C -0.41 0.01 4.43 39.22 0.17 0.19 16 18 Si 0.99 -1.71 9.04 -169.99 -1.54 -3.25 16 19 C -0.41 0.22 5.94 39.01 0.23 0.45 16 20 C -0.12 0.06 5.97 -24.46 -0.15 -0.09 16 21 C -0.12 0.13 6.10 -24.85 -0.15 -0.02 16 22 C -0.40 0.90 4.74 38.62 0.18 1.09 16 23 C -0.43 0.59 5.15 34.02 0.18 0.76 16 24 C 0.13 -0.27 4.85 -6.81 -0.03 -0.30 16 25 C -0.01 -0.01 9.52 -39.58 -0.38 -0.39 16 26 C -0.15 0.02 8.67 -39.58 -0.34 -0.32 16 27 H 0.38 -1.36 8.70 45.56 0.40 -0.96 16 28 H 0.12 -0.32 7.96 -51.93 -0.41 -0.73 16 29 H 0.14 -0.20 8.06 -52.49 -0.42 -0.63 16 30 H 0.14 -0.14 7.62 -52.49 -0.40 -0.54 16 31 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 32 H 0.10 -0.41 5.63 -51.93 -0.29 -0.70 16 33 H 0.07 -0.17 8.14 -51.93 -0.42 -0.60 16 34 H 0.08 0.08 6.90 -51.93 -0.36 -0.28 16 35 H 0.08 -0.03 7.90 -51.93 -0.41 -0.44 16 36 H 0.07 0.10 7.49 -51.92 -0.39 -0.29 16 37 H 0.08 -0.05 8.04 -51.93 -0.42 -0.47 16 38 H 0.08 -0.02 8.04 -51.93 -0.42 -0.44 16 39 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 40 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 41 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 42 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 43 H 0.08 -0.20 8.01 -51.93 -0.42 -0.62 16 44 H 0.08 -0.25 7.19 -51.93 -0.37 -0.63 16 45 H 0.10 -0.27 8.02 -51.92 -0.42 -0.68 16 46 H 0.09 0.04 7.03 -51.93 -0.36 -0.33 16 47 H 0.09 -0.37 6.01 -51.93 -0.31 -0.68 16 48 H 0.07 -0.18 8.14 -51.93 -0.42 -0.61 16 49 H 0.14 -0.12 7.61 -52.49 -0.40 -0.52 16 50 H 0.13 -0.23 4.87 -52.49 -0.26 -0.49 16 LS Contribution 387.91 15.07 5.85 5.85 Total: 0.00 -7.58 387.91 -12.31 -19.88 By element: Atomic # 1 Polarization: -3.94 SS G_CDS: -7.42 Total: -11.36 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.89 Total: -0.96 kcal Atomic # 7 Polarization: 0.80 SS G_CDS: -0.25 Total: 0.55 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -2.20 Total: -9.68 kcal Atomic # 14 Polarization: -3.20 SS G_CDS: -5.81 Total: -9.01 kcal Atomic # 16 Polarization: 5.30 SS G_CDS: -0.58 Total: 4.72 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -7.58 -12.31 -19.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607860_13421422.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.743 kcal (2) G-P(sol) polarization free energy of solvation -7.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds