Wall clock time and date at job start Mon Mar 8 2021 11:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86302 * 109.47026 * 2 1 4 4 H 1.48505 * 109.46984 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47263 * 300.00150 * 3 2 1 6 6 H 1.48499 * 109.46564 * 60.00367 * 3 2 1 7 7 C 1.50694 * 109.47362 * 120.00381 * 2 1 3 8 8 C 1.38234 * 120.00117 * 64.99828 * 7 2 1 9 9 C 1.38236 * 120.00072 * 180.02562 * 8 7 2 10 10 C 1.38232 * 120.00326 * 0.02562 * 9 8 7 11 11 S 1.76193 * 120.00400 * 179.97438 * 10 9 8 12 12 O 1.42105 * 106.40403 * 203.53958 * 11 10 9 13 13 O 1.42098 * 106.40145 * 336.45887 * 11 10 9 14 14 N 1.65606 * 107.21910 * 90.00069 * 11 10 9 15 15 C 1.43971 * 122.79468 * 269.70738 * 14 11 10 16 16 C 1.55062 * 110.22801 * 291.39381 * 15 14 11 17 17 C 1.56823 * 111.16476 * 322.43972 * 16 15 14 18 18 Si 1.83045 * 113.77432 * 319.77953 * 17 16 15 19 19 C 1.87584 * 112.74856 * 208.05905 * 18 17 16 20 20 C 1.56446 * 98.93785 * 100.63237 * 19 18 17 21 21 C 1.53802 * 109.81241 * 39.21228 * 20 19 18 22 22 C 1.55749 * 111.39873 * 312.28748 * 21 20 19 23 23 C 1.88537 * 109.76779 * 84.96219 * 18 17 16 24 24 C 1.46418 * 104.57353 * 294.18544 * 23 18 17 25 25 C 1.38241 * 119.99609 * 0.24951 * 10 9 8 26 26 C 1.38235 * 120.00049 * 359.47361 * 25 10 9 27 27 H 0.96698 * 114.00270 * 299.99484 * 1 2 3 28 28 H 1.09004 * 109.47088 * 240.00543 * 2 1 3 29 29 H 1.08000 * 120.00363 * 359.97438 * 8 7 2 30 30 H 1.07999 * 119.99710 * 179.97438 * 9 8 7 31 31 H 1.09004 * 109.38450 * 51.30983 * 15 14 11 32 32 H 1.09000 * 109.38188 * 171.00074 * 15 14 11 33 33 H 1.08998 * 109.15451 * 202.02610 * 16 15 14 34 34 H 1.08992 * 109.14063 * 82.85333 * 16 15 14 35 35 H 1.09002 * 108.62739 * 198.66198 * 17 16 15 36 36 H 1.09008 * 108.50900 * 80.80658 * 17 16 15 37 37 H 1.09002 * 111.49795 * 218.05896 * 19 18 17 38 38 H 1.09000 * 111.50364 * 343.19336 * 19 18 17 39 39 H 1.08999 * 109.41088 * 279.10961 * 20 19 18 40 40 H 1.09001 * 109.36914 * 159.28817 * 20 19 18 41 41 H 1.08998 * 109.10567 * 191.77700 * 21 20 19 42 42 H 1.09000 * 109.01057 * 72.73959 * 21 20 19 43 43 H 1.08998 * 111.15291 * 270.11098 * 22 21 20 44 44 H 1.09000 * 111.19106 * 145.88710 * 22 21 20 45 45 H 1.09010 * 110.40719 * 175.43081 * 23 18 17 46 46 H 1.08995 * 110.41334 * 52.95408 * 23 18 17 47 47 H 1.09003 * 108.76632 * 296.84168 * 24 23 18 48 48 H 1.08994 * 108.76279 * 178.69647 * 24 23 18 49 49 H 1.08001 * 120.00131 * 179.72267 * 25 10 9 50 50 H 1.07997 * 120.00585 * 180.27286 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 1 3.5350 1.7565 0.0006 5 1 1.5549 2.4565 -1.2124 6 1 1.5549 2.4564 1.2126 7 6 1.9313 -0.7104 1.2303 8 6 1.6847 -2.0602 1.3982 9 6 2.1451 -2.7118 2.5271 10 6 2.8516 -2.0136 3.4884 11 16 3.4379 -2.8439 4.9276 12 8 3.6035 -1.8470 5.9266 13 8 2.6084 -3.9850 5.0983 14 7 4.9533 -3.4149 4.5811 15 6 5.1855 -4.7214 4.0226 16 6 4.8398 -5.8183 5.0626 17 6 5.2581 -5.3792 6.5089 18 14 6.8673 -4.5097 6.5796 19 6 7.7387 -4.7292 8.2262 20 6 8.7621 -5.8383 7.8137 21 6 9.2961 -5.5548 6.3994 22 6 8.1383 -5.2316 5.4091 23 6 6.6177 -2.6760 6.2192 24 6 6.1753 -2.6316 4.8242 25 6 3.0933 -0.6625 3.3233 26 6 2.6379 -0.0121 2.1917 27 1 -0.3933 0.4416 0.7650 28 1 1.7923 -0.5138 -0.8901 29 1 1.1317 -2.6056 0.6478 30 1 1.9521 -3.7663 2.6584 31 1 4.5573 -4.8552 3.1418 32 1 6.2330 -4.8109 3.7350 33 1 5.3660 -6.7366 4.8022 34 1 3.7660 -6.0042 5.0425 35 1 5.3138 -6.2664 7.1397 36 1 4.4876 -4.7184 6.9064 37 1 8.2442 -3.8145 8.5357 38 1 7.0539 -5.0840 8.9964 39 1 8.2681 -6.8098 7.8264 40 1 9.5923 -5.8448 8.5199 41 1 9.8384 -6.4297 6.0409 42 1 9.9777 -4.7052 6.4409 43 1 7.7642 -6.1375 4.9321 44 1 8.4493 -4.4981 4.6652 45 1 7.5561 -2.1341 6.3377 46 1 5.8519 -2.2606 6.8743 47 1 6.9726 -3.0205 4.1909 48 1 5.9869 -1.5939 4.5490 49 1 3.6414 -0.1160 4.0764 50 1 2.8305 1.0424 2.0605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607860_13421422.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:34:35 Heat of formation + Delta-G solvation = -106.119733 kcal Electronic energy + Delta-G solvation = -30727.902554 eV Core-core repulsion = 26777.608000 eV Total energy + Delta-G solvation = -3950.294555 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 369.139 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.71602 -38.91675 -38.48411 -37.71894 -37.01086 -36.12765 -33.76821 -33.05316 -32.24430 -30.93424 -29.72393 -27.22093 -26.84620 -24.87542 -24.17094 -23.49457 -22.99879 -22.38601 -20.95644 -20.13437 -18.98400 -18.34280 -18.25951 -17.43135 -16.99597 -16.47185 -16.17366 -16.08445 -15.87464 -15.71173 -15.64745 -15.42870 -15.24018 -15.12991 -14.66276 -14.55124 -14.21450 -14.11206 -13.95763 -13.87572 -13.67253 -13.28304 -13.19191 -13.16711 -12.66354 -12.59952 -12.58603 -12.50869 -12.37314 -12.23386 -12.19669 -12.06430 -11.91350 -11.74353 -11.68676 -11.46248 -11.29157 -10.61397 -10.46482 -10.40788 -10.28489 -10.20432 -10.14857 -9.97502 -0.80723 -0.40969 0.13909 1.09681 1.42100 1.48273 1.73914 1.83288 1.88025 1.92630 2.01647 2.32948 2.66419 2.67220 3.12142 3.39101 3.50911 3.70720 3.77981 3.80318 4.10362 4.13800 4.14654 4.17989 4.18999 4.28980 4.38062 4.43720 4.45252 4.58941 4.61270 4.66241 4.68405 4.74187 4.78045 4.79857 4.84425 4.90137 4.93952 4.95797 5.08545 5.11242 5.15930 5.18506 5.20641 5.27354 5.39008 5.40170 5.43388 5.55273 5.56361 5.65584 5.66570 5.72600 6.59059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.087 4.087 3 Si 0.977 3.023 4 H -0.250 1.250 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.065 4.065 8 C -0.115 4.115 9 C -0.028 4.028 10 C -0.682 4.682 11 S 2.700 3.300 12 O -0.980 6.980 13 O -0.974 6.974 14 N -0.987 5.987 15 C 0.098 3.902 16 C -0.137 4.137 17 C -0.429 4.429 18 Si 1.027 2.973 19 C -0.428 4.428 20 C -0.127 4.127 21 C -0.121 4.121 22 C -0.394 4.394 23 C -0.442 4.442 24 C 0.119 3.881 25 C -0.026 4.026 26 C -0.152 4.152 27 H 0.390 0.610 28 H 0.136 0.864 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.085 0.915 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.116 0.884 46 H 0.070 0.930 47 H 0.121 0.879 48 H 0.076 0.924 49 H 0.152 0.848 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.762 0.444 -5.136 7.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.197 4.197 3 Si 0.801 3.199 4 H -0.173 1.173 5 H -0.197 1.197 6 H -0.176 1.176 7 C -0.065 4.065 8 C -0.134 4.134 9 C -0.047 4.047 10 C -0.769 4.769 11 S 2.792 3.208 12 O -0.970 6.970 13 O -0.964 6.964 14 N -0.826 5.826 15 C -0.027 4.027 16 C -0.176 4.176 17 C -0.514 4.514 18 Si 1.218 2.782 19 C -0.513 4.513 20 C -0.165 4.165 21 C -0.158 4.158 22 C -0.482 4.482 23 C -0.528 4.528 24 C -0.004 4.004 25 C -0.045 4.045 26 C -0.171 4.171 27 H 0.239 0.761 28 H 0.154 0.846 29 H 0.170 0.830 30 H 0.169 0.831 31 H 0.103 0.897 32 H 0.145 0.855 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.109 0.891 44 H 0.119 0.881 45 H 0.134 0.866 46 H 0.089 0.911 47 H 0.139 0.861 48 H 0.094 0.906 49 H 0.169 0.831 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.614 0.879 -4.901 6.788 hybrid contribution -0.621 -0.046 0.556 0.835 sum 3.993 0.834 -4.344 5.959 Atomic orbital electron populations 1.86517 1.16979 1.81923 1.50104 1.25196 0.85236 1.11130 0.98117 0.85271 0.80169 0.74260 0.80222 1.17344 1.19745 1.17615 1.20889 0.94620 0.95043 0.95974 1.21395 0.99620 0.94188 0.98184 1.21206 0.91391 1.00701 0.91401 1.30984 1.16641 1.06731 1.22592 1.01576 0.72557 0.72770 0.73857 1.93546 1.85998 1.61367 1.56077 1.93555 1.67049 1.50311 1.85510 1.57260 1.21137 1.25010 1.79172 1.21799 1.05709 0.79543 0.95692 1.22759 1.02265 0.99432 0.93140 1.26802 1.16959 1.07764 0.99841 0.79247 0.65190 0.66453 0.67297 1.26861 1.06501 1.01920 1.15977 1.22109 0.98768 0.98538 0.97075 1.21864 0.98617 1.02050 0.93303 1.26522 1.08327 1.07624 1.05757 1.25675 1.05919 1.20625 1.00611 1.20031 0.86250 0.96539 0.97627 1.21088 0.94522 0.92101 0.96820 1.21425 1.00134 1.00981 0.94531 0.76061 0.84608 0.83006 0.83097 0.89663 0.85456 0.88747 0.92180 0.90717 0.94004 0.90100 0.91497 0.91977 0.92342 0.91781 0.91586 0.89145 0.88087 0.86614 0.91083 0.86125 0.90610 0.83071 0.83719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.02 12.83 -148.98 -1.91 -0.89 16 2 C -0.09 0.33 2.80 71.23 0.20 0.53 16 3 Si 0.98 -3.62 25.14 68.60 1.72 -1.90 16 4 H -0.25 0.83 7.11 99.48 0.71 1.53 16 5 H -0.27 -0.02 7.11 99.48 0.71 0.69 16 6 H -0.25 0.83 7.04 99.48 0.70 1.53 16 7 C -0.06 0.09 5.35 -19.87 -0.11 -0.02 16 8 C -0.12 0.08 9.69 22.27 0.22 0.30 16 9 C -0.03 -0.03 9.52 22.27 0.21 0.18 16 10 C -0.68 -1.88 5.97 22.27 0.13 -1.75 16 11 S 2.70 14.53 5.41 -56.49 -0.31 14.22 16 12 O -0.98 -10.39 15.70 -128.00 -2.01 -12.40 16 13 O -0.97 -9.99 14.83 -128.00 -1.90 -11.89 16 14 N -0.99 1.69 2.10 -527.19 -1.11 0.58 16 15 C 0.10 -0.52 5.36 87.56 0.47 -0.05 16 16 C -0.14 0.14 5.48 32.64 0.18 0.32 16 17 C -0.43 -0.58 4.43 73.32 0.32 -0.26 16 18 Si 1.03 -3.70 9.04 68.60 0.62 -3.08 16 19 C -0.43 0.02 5.94 73.18 0.44 0.46 16 20 C -0.13 0.09 5.97 32.07 0.19 0.28 16 21 C -0.12 0.43 6.10 31.81 0.19 0.62 16 22 C -0.39 2.73 4.74 72.93 0.35 3.08 16 23 C -0.44 1.27 5.15 69.95 0.36 1.63 16 24 C 0.12 -0.61 4.85 84.22 0.41 -0.20 16 25 C -0.03 -0.03 9.52 22.27 0.21 0.18 16 26 C -0.15 0.12 8.67 22.27 0.19 0.31 16 27 H 0.39 -2.98 8.70 -74.06 -0.64 -3.63 16 28 H 0.14 -0.88 7.96 -2.38 -0.02 -0.90 16 29 H 0.15 -0.57 8.06 -2.91 -0.02 -0.60 16 30 H 0.15 -0.20 7.62 -2.91 -0.02 -0.22 16 31 H 0.09 -0.66 8.14 -2.38 -0.02 -0.68 16 32 H 0.13 -1.49 5.63 -2.39 -0.01 -1.50 16 33 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 34 H 0.06 0.23 6.90 -2.39 -0.02 0.22 16 35 H 0.07 0.09 7.90 -2.39 -0.02 0.07 16 36 H 0.04 0.25 7.49 -2.38 -0.02 0.23 16 37 H 0.08 -0.03 8.04 -2.39 -0.02 -0.05 16 38 H 0.07 0.11 8.04 -2.39 -0.02 0.09 16 39 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 40 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 43 H 0.09 -0.74 8.01 -2.39 -0.02 -0.76 16 44 H 0.10 -1.06 7.19 -2.39 -0.02 -1.08 16 45 H 0.12 -0.76 8.02 -2.38 -0.02 -0.78 16 46 H 0.07 0.17 7.03 -2.39 -0.02 0.16 16 47 H 0.12 -1.45 6.01 -2.39 -0.01 -1.47 16 48 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 49 H 0.15 -0.17 7.61 -2.91 -0.02 -0.19 16 50 H 0.15 -0.63 4.87 -2.91 -0.01 -0.64 16 Total: 0.00 -19.46 387.91 0.12 -19.34 By element: Atomic # 1 Polarization: -10.65 SS G_CDS: 1.04 Total: -9.61 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 3.97 Total: 5.62 kcal Atomic # 7 Polarization: 1.69 SS G_CDS: -1.11 Total: 0.58 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -5.82 Total: -25.18 kcal Atomic # 14 Polarization: -7.33 SS G_CDS: 2.34 Total: -4.98 kcal Atomic # 16 Polarization: 14.53 SS G_CDS: -0.31 Total: 14.22 kcal Total: -19.46 0.12 -19.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607860_13421422.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.775 kcal (2) G-P(sol) polarization free energy of solvation -19.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds