Wall clock time and date at job start Mon Mar 8 2021 11:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86302 * 109.46973 * 2 1 4 4 H 1.48496 * 109.47642 * 300.00026 * 3 2 1 5 5 H 1.48504 * 109.46968 * 60.00234 * 3 2 1 6 6 H 1.48496 * 109.47031 * 179.97438 * 3 2 1 7 7 C 1.50697 * 109.47132 * 240.00495 * 2 1 3 8 8 C 1.33394 * 122.53597 * 284.99369 * 7 2 1 9 9 S 1.76196 * 125.20257 * 0.02562 * 8 7 2 10 10 O 1.42096 * 106.40370 * 66.17838 * 9 8 7 11 11 O 1.42105 * 106.40187 * 293.24970 * 9 8 7 12 12 N 1.65608 * 107.21523 * 179.71485 * 9 8 7 13 13 C 1.46090 * 122.76256 * 86.51311 * 12 9 8 14 14 C 1.46006 * 114.87651 * 78.53271 * 13 12 9 15 15 C 1.56518 * 108.97466 * 60.18331 * 14 13 12 16 16 Si 1.83376 * 108.24014 * 291.77235 * 15 14 13 17 17 C 1.88355 * 111.35698 * 322.39602 * 16 15 14 18 18 C 1.56242 * 99.09311 * 221.45564 * 17 16 15 19 19 C 1.53729 * 109.67990 * 39.76805 * 18 17 16 20 20 C 1.55527 * 111.35626 * 311.79516 * 19 18 17 21 21 C 1.87782 * 113.96012 * 86.63148 * 16 15 14 22 22 C 1.44796 * 122.76168 * 266.21344 * 12 9 8 23 23 S 1.75881 * 109.59109 * 179.75295 * 8 7 2 24 24 C 1.75879 * 90.97300 * 0.23266 * 23 8 7 25 25 C 1.33389 * 109.59567 * 359.97438 * 24 23 8 26 26 H 0.96699 * 113.99954 * 59.99930 * 1 2 3 27 27 H 1.08994 * 109.47328 * 120.00167 * 2 1 3 28 28 H 1.09003 * 108.39985 * 199.93337 * 13 12 9 29 29 H 1.09007 * 108.40131 * 317.30966 * 13 12 9 30 30 H 1.08999 * 109.55113 * 180.02562 * 14 13 12 31 31 H 1.08997 * 109.55560 * 300.22991 * 14 13 12 32 32 H 1.09007 * 109.71221 * 51.45808 * 15 14 13 33 33 H 1.09001 * 109.71194 * 172.03857 * 15 14 13 34 34 H 1.09005 * 111.47042 * 338.92939 * 17 16 15 35 35 H 1.09001 * 111.47117 * 103.98174 * 17 16 15 36 36 H 1.08995 * 109.44043 * 279.69711 * 18 17 16 37 37 H 1.08997 * 109.39647 * 159.80197 * 18 17 16 38 38 H 1.09004 * 109.11049 * 191.29899 * 19 18 17 39 39 H 1.08995 * 109.02764 * 72.24299 * 19 18 17 40 40 H 1.09005 * 111.11155 * 270.26283 * 20 19 18 41 41 H 1.09000 * 111.15290 * 146.14439 * 20 19 18 42 42 H 1.08994 * 110.14025 * 80.06555 * 21 16 15 43 43 H 1.09003 * 110.13686 * 201.81735 * 21 16 15 44 44 H 1.09003 * 110.03250 * 50.61548 * 22 12 9 45 45 H 1.08999 * 110.03171 * 172.10310 * 22 12 9 46 46 H 1.08009 * 125.20493 * 179.97438 * 24 23 8 47 47 H 1.08001 * 122.54587 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 1 1.5550 2.4566 -1.2124 5 1 1.5549 2.4565 1.2126 6 1 3.5349 1.7565 0.0006 7 6 1.9313 -0.7103 -1.2305 8 6 1.8961 -2.0377 -1.3572 9 16 1.2753 -3.1575 -0.1468 10 8 -0.1206 -2.9102 -0.0498 11 8 2.1580 -3.0776 0.9640 12 7 1.4376 -4.6858 -0.7639 13 6 2.6628 -5.4690 -0.6235 14 6 2.8439 -6.0972 0.6820 15 6 1.6490 -7.0725 0.9477 16 14 0.1284 -6.0712 1.1660 17 6 0.4850 -4.4784 2.1061 18 6 -0.7719 -4.4526 3.0339 19 6 -1.0818 -5.8758 3.5255 20 6 -1.0774 -6.8945 2.3503 21 6 -0.7515 -5.6604 -0.4412 22 6 0.3748 -5.3580 -1.4816 23 16 2.5571 -2.4986 -2.9206 24 6 2.8592 -0.8134 -3.3233 25 6 2.4669 -0.0349 -2.3136 26 1 -0.3933 0.4417 -0.7650 27 1 1.7923 -0.5138 0.8899 28 1 2.6609 -6.2500 -1.3839 29 1 3.5136 -4.8131 -0.8081 30 1 3.7798 -6.6559 0.6913 31 1 2.8694 -5.3298 1.4557 32 1 1.5275 -7.7451 0.0985 33 1 1.8412 -7.6520 1.8507 34 1 1.4061 -4.5539 2.6840 35 1 0.5058 -3.6172 1.4383 36 1 -1.6259 -4.0671 2.4771 37 1 -0.5763 -3.8076 3.8905 38 1 -2.0628 -5.8835 4.0007 39 1 -0.3292 -6.1710 4.2565 40 1 -2.0678 -6.9829 1.9036 41 1 -0.7072 -7.8672 2.6742 42 1 -1.3481 -6.5111 -0.7705 43 1 -1.3863 -4.7843 -0.3083 44 1 -0.0143 -4.7092 -2.2663 45 1 0.7457 -6.2875 -1.9135 46 1 3.2957 -0.4625 -4.2468 47 1 2.5570 1.0410 -2.3406 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607860_13652106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:34:52 Heat of formation + Delta-G solvation = -58.026205 kcal Electronic energy + Delta-G solvation = -31015.738260 eV Core-core repulsion = 27156.681444 eV Total energy + Delta-G solvation = -3859.056816 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 375.095 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.12267 -39.24705 -38.09835 -37.39398 -37.05340 -35.85712 -34.14779 -31.55780 -30.48487 -29.63403 -28.02613 -26.86799 -25.10356 -24.37986 -23.71243 -22.63349 -21.56775 -20.72906 -19.84226 -19.04735 -18.68897 -17.96697 -17.37659 -16.92238 -16.53421 -16.15220 -15.96671 -15.89888 -15.66417 -15.55863 -15.25721 -14.92586 -14.69482 -14.57014 -14.19407 -14.07209 -14.00828 -13.83853 -13.62543 -13.14722 -13.00214 -12.89524 -12.77833 -12.67867 -12.59087 -12.48877 -12.37361 -12.35739 -12.21874 -11.92179 -11.80437 -11.66327 -11.58869 -11.27081 -11.06836 -10.58139 -10.56466 -10.46322 -10.44203 -10.12352 -10.01839 -9.73621 -0.70507 -0.65740 0.18673 0.54165 0.98973 1.16164 1.33644 1.45557 1.67714 1.77989 1.82770 1.94573 2.02831 2.69845 2.77476 3.32553 3.40491 3.54867 3.59362 3.89123 3.91708 4.00813 4.11810 4.24675 4.29029 4.30112 4.32292 4.45695 4.47732 4.52297 4.58553 4.64880 4.71729 4.74197 4.76978 4.80450 4.84178 4.93501 4.97299 5.05516 5.07928 5.21406 5.28098 5.36561 5.41067 5.50333 5.54874 5.57593 5.59424 5.76222 6.47103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.516 6.516 2 C -0.112 4.112 3 Si 0.961 3.039 4 H -0.245 1.245 5 H -0.242 1.242 6 H -0.243 1.243 7 C 0.001 3.999 8 C -0.772 4.772 9 S 2.733 3.267 10 O -0.914 6.914 11 O -0.938 6.938 12 N -1.004 6.004 13 C 0.116 3.884 14 C -0.143 4.143 15 C -0.404 4.404 16 Si 0.963 3.037 17 C -0.416 4.416 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.401 4.401 21 C -0.432 4.432 22 C 0.127 3.873 23 S 0.207 5.793 24 C -0.162 4.162 25 C -0.168 4.168 26 H 0.379 0.621 27 H 0.126 0.874 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.180 0.820 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.546 -1.236 -5.401 6.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.321 6.321 2 C -0.224 4.224 3 Si 0.781 3.219 4 H -0.169 1.169 5 H -0.165 1.165 6 H -0.166 1.166 7 C -0.016 4.016 8 C -0.971 4.971 9 S 2.818 3.182 10 O -0.904 6.904 11 O -0.928 6.928 12 N -0.843 5.843 13 C -0.009 4.009 14 C -0.182 4.182 15 C -0.492 4.492 16 Si 1.157 2.843 17 C -0.502 4.502 18 C -0.155 4.155 19 C -0.154 4.154 20 C -0.488 4.488 21 C -0.520 4.520 22 C 0.003 3.997 23 S 0.473 5.527 24 C -0.300 4.300 25 C -0.198 4.198 26 H 0.226 0.774 27 H 0.144 0.856 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.123 0.877 44 H 0.092 0.908 45 H 0.115 0.885 46 H 0.197 0.803 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.913 -1.859 -4.941 6.029 hybrid contribution -0.102 1.471 -0.510 1.560 sum 2.811 -0.388 -5.451 6.145 Atomic orbital electron populations 1.86705 1.14981 1.81607 1.48769 1.25329 0.86828 1.13086 0.97135 0.85525 0.80989 0.73357 0.82071 1.16887 1.16496 1.16621 1.19023 0.94373 0.91453 0.96759 1.35946 1.25775 1.14656 1.20705 1.01964 0.74204 0.70752 0.71249 1.93643 1.28782 1.83575 1.84379 1.93679 1.68498 1.85633 1.45005 1.57776 1.23142 1.31242 1.72107 1.19980 0.85012 0.96247 0.99624 1.21124 0.99113 0.99599 0.98365 1.26334 1.11581 1.06078 1.05172 0.80202 0.67789 0.68660 0.67674 1.27987 1.01015 1.12332 1.08827 1.21934 0.97437 0.96673 0.99501 1.21812 1.01769 0.93839 0.98000 1.26488 1.10654 1.02942 1.08684 1.27600 1.04710 1.06934 1.12754 1.21464 0.86195 0.98106 0.93984 1.84053 1.56249 1.06015 1.06382 1.26122 1.03596 0.96772 1.03461 1.20337 1.03893 1.02013 0.93602 0.77392 0.85600 0.89254 0.91324 0.89564 0.89311 0.90218 0.89968 0.88833 0.93675 0.91276 0.91610 0.91903 0.92081 0.90414 0.90530 0.89449 0.87723 0.90777 0.88504 0.80288 0.82911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -1.29 12.27 -36.45 -0.45 -1.74 16 2 C -0.11 -0.22 2.33 36.00 0.08 -0.14 16 3 Si 0.96 -0.05 25.70 -169.99 -4.37 -4.42 16 4 H -0.25 0.30 6.85 56.52 0.39 0.69 16 5 H -0.24 -0.25 7.11 56.52 0.40 0.16 16 6 H -0.24 -0.04 7.11 56.52 0.40 0.36 16 7 C 0.00 0.00 5.13 -106.25 -0.55 -0.54 16 8 C -0.77 -1.85 6.48 29.04 0.19 -1.66 16 9 S 2.73 9.53 2.69 -107.50 -0.29 9.24 16 10 O -0.91 -4.95 12.99 -59.76 -0.78 -5.73 16 11 O -0.94 -4.86 12.88 -57.17 -0.74 -5.60 16 12 N -1.00 -0.24 1.59 -117.69 -0.19 -0.42 16 13 C 0.12 -0.17 4.93 -7.58 -0.04 -0.21 16 14 C -0.14 0.10 5.62 -28.15 -0.16 -0.06 16 15 C -0.40 0.38 4.83 39.05 0.19 0.57 16 16 Si 0.96 0.54 8.60 -169.99 -1.46 -0.93 16 17 C -0.42 -1.62 3.60 38.90 0.14 -1.48 16 18 C -0.12 -0.43 5.97 -24.61 -0.15 -0.58 16 19 C -0.12 -0.26 6.09 -25.01 -0.15 -0.41 16 20 C -0.40 -0.44 5.84 38.50 0.22 -0.21 16 21 C -0.43 -0.08 4.92 38.92 0.19 0.12 16 22 C 0.13 -0.15 5.97 -3.20 -0.02 -0.17 16 23 S 0.21 -0.09 23.12 -107.50 -2.49 -2.58 16 24 C -0.16 0.20 11.23 29.04 0.33 0.52 16 25 C -0.17 0.01 8.74 -41.21 -0.36 -0.35 16 26 H 0.38 -0.59 8.70 45.56 0.40 -0.19 16 27 H 0.13 0.32 7.26 -51.93 -0.38 -0.06 16 28 H 0.09 -0.36 7.19 -51.93 -0.37 -0.74 16 29 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 30 H 0.09 -0.18 8.14 -51.93 -0.42 -0.60 16 31 H 0.09 0.09 5.25 -51.93 -0.27 -0.18 16 32 H 0.08 -0.19 7.93 -51.92 -0.41 -0.60 16 33 H 0.08 -0.09 7.95 -51.93 -0.41 -0.50 16 34 H 0.09 0.36 6.80 -51.93 -0.35 0.01 16 35 H 0.05 0.23 1.70 -19.17 -0.03 0.20 16 36 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 39 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 40 H 0.08 0.06 8.03 -51.93 -0.42 -0.36 16 41 H 0.08 0.02 8.03 -51.93 -0.42 -0.40 16 42 H 0.09 -0.14 8.00 -51.93 -0.42 -0.55 16 43 H 0.10 0.22 6.61 -51.93 -0.34 -0.12 16 44 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 45 H 0.10 -0.39 7.19 -51.93 -0.37 -0.76 16 46 H 0.18 -0.76 8.06 -52.48 -0.42 -1.18 16 47 H 0.15 -0.32 5.56 -52.49 -0.29 -0.61 16 LS Contribution 363.83 15.07 5.48 5.48 Total: 0.00 -7.18 363.83 -11.63 -18.81 By element: Atomic # 1 Polarization: -1.24 SS G_CDS: -6.29 Total: -7.52 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.08 Total: -4.60 kcal Atomic # 7 Polarization: -0.24 SS G_CDS: -0.19 Total: -0.42 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -1.96 Total: -13.07 kcal Atomic # 14 Polarization: 0.49 SS G_CDS: -5.83 Total: -5.35 kcal Atomic # 16 Polarization: 9.44 SS G_CDS: -2.77 Total: 6.66 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -7.18 -11.63 -18.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607860_13652106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.212 kcal (2) G-P(sol) polarization free energy of solvation -7.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds