Wall clock time and date at job start Mon Mar 8 2021 11:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86302 * 109.46973 * 2 1 4 4 H 1.48496 * 109.47642 * 300.00026 * 3 2 1 5 5 H 1.48504 * 109.46968 * 60.00234 * 3 2 1 6 6 H 1.48496 * 109.47031 * 179.97438 * 3 2 1 7 7 C 1.50697 * 109.47132 * 240.00495 * 2 1 3 8 8 C 1.33394 * 122.53597 * 284.99369 * 7 2 1 9 9 S 1.76196 * 125.20257 * 0.02562 * 8 7 2 10 10 O 1.42096 * 106.40370 * 66.17838 * 9 8 7 11 11 O 1.42105 * 106.40187 * 293.24970 * 9 8 7 12 12 N 1.65608 * 107.21523 * 179.71485 * 9 8 7 13 13 C 1.46090 * 122.76256 * 86.51311 * 12 9 8 14 14 C 1.46006 * 114.87651 * 78.53271 * 13 12 9 15 15 C 1.56518 * 108.97466 * 60.18331 * 14 13 12 16 16 Si 1.83376 * 108.24014 * 291.77235 * 15 14 13 17 17 C 1.88355 * 111.35698 * 322.39602 * 16 15 14 18 18 C 1.56242 * 99.09311 * 221.45564 * 17 16 15 19 19 C 1.53729 * 109.67990 * 39.76805 * 18 17 16 20 20 C 1.55527 * 111.35626 * 311.79516 * 19 18 17 21 21 C 1.87782 * 113.96012 * 86.63148 * 16 15 14 22 22 C 1.44796 * 122.76168 * 266.21344 * 12 9 8 23 23 S 1.75881 * 109.59109 * 179.75295 * 8 7 2 24 24 C 1.75879 * 90.97300 * 0.23266 * 23 8 7 25 25 C 1.33389 * 109.59567 * 359.97438 * 24 23 8 26 26 H 0.96699 * 113.99954 * 59.99930 * 1 2 3 27 27 H 1.08994 * 109.47328 * 120.00167 * 2 1 3 28 28 H 1.09003 * 108.39985 * 199.93337 * 13 12 9 29 29 H 1.09007 * 108.40131 * 317.30966 * 13 12 9 30 30 H 1.08999 * 109.55113 * 180.02562 * 14 13 12 31 31 H 1.08997 * 109.55560 * 300.22991 * 14 13 12 32 32 H 1.09007 * 109.71221 * 51.45808 * 15 14 13 33 33 H 1.09001 * 109.71194 * 172.03857 * 15 14 13 34 34 H 1.09005 * 111.47042 * 338.92939 * 17 16 15 35 35 H 1.09001 * 111.47117 * 103.98174 * 17 16 15 36 36 H 1.08995 * 109.44043 * 279.69711 * 18 17 16 37 37 H 1.08997 * 109.39647 * 159.80197 * 18 17 16 38 38 H 1.09004 * 109.11049 * 191.29899 * 19 18 17 39 39 H 1.08995 * 109.02764 * 72.24299 * 19 18 17 40 40 H 1.09005 * 111.11155 * 270.26283 * 20 19 18 41 41 H 1.09000 * 111.15290 * 146.14439 * 20 19 18 42 42 H 1.08994 * 110.14025 * 80.06555 * 21 16 15 43 43 H 1.09003 * 110.13686 * 201.81735 * 21 16 15 44 44 H 1.09003 * 110.03250 * 50.61548 * 22 12 9 45 45 H 1.08999 * 110.03171 * 172.10310 * 22 12 9 46 46 H 1.08009 * 125.20493 * 179.97438 * 24 23 8 47 47 H 1.08001 * 122.54587 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 1 1.5550 2.4566 -1.2124 5 1 1.5549 2.4565 1.2126 6 1 3.5349 1.7565 0.0006 7 6 1.9313 -0.7103 -1.2305 8 6 1.8961 -2.0377 -1.3572 9 16 1.2753 -3.1575 -0.1468 10 8 -0.1206 -2.9102 -0.0498 11 8 2.1580 -3.0776 0.9640 12 7 1.4376 -4.6858 -0.7639 13 6 2.6628 -5.4690 -0.6235 14 6 2.8439 -6.0972 0.6820 15 6 1.6490 -7.0725 0.9477 16 14 0.1284 -6.0712 1.1660 17 6 0.4850 -4.4784 2.1061 18 6 -0.7719 -4.4526 3.0339 19 6 -1.0818 -5.8758 3.5255 20 6 -1.0774 -6.8945 2.3503 21 6 -0.7515 -5.6604 -0.4412 22 6 0.3748 -5.3580 -1.4816 23 16 2.5571 -2.4986 -2.9206 24 6 2.8592 -0.8134 -3.3233 25 6 2.4669 -0.0349 -2.3136 26 1 -0.3933 0.4417 -0.7650 27 1 1.7923 -0.5138 0.8899 28 1 2.6609 -6.2500 -1.3839 29 1 3.5136 -4.8131 -0.8081 30 1 3.7798 -6.6559 0.6913 31 1 2.8694 -5.3298 1.4557 32 1 1.5275 -7.7451 0.0985 33 1 1.8412 -7.6520 1.8507 34 1 1.4061 -4.5539 2.6840 35 1 0.5058 -3.6172 1.4383 36 1 -1.6259 -4.0671 2.4771 37 1 -0.5763 -3.8076 3.8905 38 1 -2.0628 -5.8835 4.0007 39 1 -0.3292 -6.1710 4.2565 40 1 -2.0678 -6.9829 1.9036 41 1 -0.7072 -7.8672 2.6742 42 1 -1.3481 -6.5111 -0.7705 43 1 -1.3863 -4.7843 -0.3083 44 1 -0.0143 -4.7092 -2.2663 45 1 0.7457 -6.2875 -1.9135 46 1 3.2957 -0.4625 -4.2468 47 1 2.5570 1.0410 -2.3406 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607860_13652106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:34:51 Heat of formation + Delta-G solvation = -54.394775 kcal Electronic energy + Delta-G solvation = -31015.580789 eV Core-core repulsion = 27156.681444 eV Total energy + Delta-G solvation = -3858.899346 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 375.095 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.13994 -39.17725 -38.34953 -37.62851 -37.16900 -36.09381 -34.05996 -31.54704 -30.43686 -29.81875 -28.10835 -26.77807 -25.25991 -24.37812 -23.70783 -22.57635 -21.65509 -20.89369 -19.91138 -19.12674 -18.77673 -17.99963 -17.39192 -17.02518 -16.60433 -16.24569 -16.05934 -15.93074 -15.75687 -15.63898 -15.32076 -14.90737 -14.66646 -14.55790 -14.29356 -14.10608 -14.05718 -13.84141 -13.63295 -13.29998 -13.11006 -13.06653 -12.92959 -12.68768 -12.62388 -12.56511 -12.46694 -12.41280 -12.19779 -12.05536 -11.75816 -11.67586 -11.51884 -11.47972 -11.31168 -10.66775 -10.57954 -10.45680 -10.44169 -10.18922 -10.08054 -9.67912 -0.79984 -0.71629 0.19226 0.60462 0.94639 1.18268 1.34191 1.43997 1.56383 1.74304 1.80268 1.90971 2.07399 2.61964 2.66888 3.26089 3.39346 3.47630 3.72894 3.95913 3.97209 4.01849 4.05201 4.10009 4.22161 4.24069 4.25263 4.42932 4.50258 4.60313 4.60936 4.63797 4.67660 4.79553 4.81362 4.82227 4.90351 4.92633 5.01016 5.01286 5.05869 5.13866 5.18388 5.22677 5.34492 5.42655 5.44652 5.55650 5.59669 5.66534 6.52234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.133 4.133 3 Si 0.998 3.002 4 H -0.216 1.216 5 H -0.266 1.266 6 H -0.244 1.244 7 C -0.010 4.010 8 C -0.807 4.807 9 S 2.735 3.265 10 O -0.949 6.949 11 O -0.972 6.972 12 N -0.999 5.999 13 C 0.103 3.897 14 C -0.149 4.149 15 C -0.394 4.394 16 Si 0.997 3.003 17 C -0.453 4.453 18 C -0.124 4.124 19 C -0.119 4.119 20 C -0.408 4.408 21 C -0.438 4.438 22 C 0.119 3.881 23 S 0.239 5.761 24 C -0.151 4.151 25 C -0.184 4.184 26 H 0.393 0.607 27 H 0.102 0.898 28 H 0.130 0.870 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.032 0.968 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.110 0.890 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.139 0.861 46 H 0.215 0.785 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.755 -2.861 -8.617 9.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.346 6.346 2 C -0.242 4.242 3 Si 0.816 3.184 4 H -0.138 1.138 5 H -0.190 1.190 6 H -0.167 1.167 7 C -0.028 4.028 8 C -1.008 5.008 9 S 2.823 3.177 10 O -0.939 6.939 11 O -0.962 6.962 12 N -0.839 5.839 13 C -0.021 4.021 14 C -0.188 4.188 15 C -0.484 4.484 16 Si 1.188 2.812 17 C -0.534 4.534 18 C -0.162 4.162 19 C -0.157 4.157 20 C -0.494 4.494 21 C -0.527 4.527 22 C -0.005 4.005 23 S 0.506 5.494 24 C -0.289 4.289 25 C -0.213 4.213 26 H 0.243 0.757 27 H 0.120 0.880 28 H 0.148 0.852 29 H 0.090 0.910 30 H 0.124 0.876 31 H 0.079 0.921 32 H 0.128 0.872 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.129 0.871 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.157 0.843 46 H 0.232 0.768 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.092 -3.463 -8.125 9.735 hybrid contribution -0.486 2.016 0.532 2.141 sum 3.606 -1.447 -7.594 8.530 Atomic orbital electron populations 1.86659 1.15798 1.82245 1.49922 1.25654 0.86514 1.15278 0.96762 0.85037 0.80396 0.70907 0.82106 1.13820 1.19024 1.16747 1.19231 0.94657 0.91664 0.97262 1.35845 1.27642 1.14907 1.22421 1.01416 0.73235 0.71658 0.71396 1.93589 1.30599 1.84492 1.85194 1.93626 1.68893 1.86402 1.47291 1.57558 1.24330 1.29965 1.72034 1.20300 0.84290 0.97131 1.00383 1.21180 1.00248 0.99285 0.98074 1.26184 1.09551 1.05876 1.06764 0.79907 0.68535 0.65746 0.66998 1.28413 0.99976 1.15416 1.09588 1.21990 0.97376 0.97799 0.99032 1.21815 1.01851 0.93158 0.98835 1.26594 1.11379 1.03141 1.08308 1.27606 1.05234 1.06585 1.13245 1.21791 0.85454 0.99821 0.93431 1.83799 1.55113 1.06508 1.04000 1.26628 1.01928 0.96155 1.04153 1.20509 1.04430 1.03186 0.93217 0.75738 0.87971 0.85174 0.91018 0.87597 0.92148 0.87200 0.89554 0.90223 0.94984 0.92472 0.93030 0.91840 0.91740 0.90053 0.89078 0.87130 0.90481 0.90444 0.84268 0.76819 0.80949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -4.54 12.27 -147.82 -1.81 -6.36 16 2 C -0.13 -0.91 2.33 71.23 0.17 -0.74 16 3 Si 1.00 0.83 25.70 68.60 1.76 2.60 16 4 H -0.22 0.85 6.85 99.48 0.68 1.53 16 5 H -0.27 -1.12 7.11 99.48 0.71 -0.41 16 6 H -0.24 -0.18 7.11 99.48 0.71 0.53 16 7 C -0.01 -0.05 5.13 -20.92 -0.11 -0.16 16 8 C -0.81 -5.02 6.48 66.72 0.43 -4.59 16 9 S 2.73 26.41 2.69 -56.49 -0.15 26.26 16 10 O -0.95 -14.00 12.99 -125.53 -1.63 -15.63 16 11 O -0.97 -14.18 12.88 -128.00 -1.65 -15.83 16 12 N -1.00 -0.56 1.59 -526.26 -0.84 -1.40 16 13 C 0.10 -0.43 4.93 84.31 0.42 -0.02 16 14 C -0.15 0.29 5.62 29.67 0.17 0.46 16 15 C -0.39 1.43 4.83 73.21 0.35 1.78 16 16 Si 1.00 1.65 8.60 68.60 0.59 2.24 16 17 C -0.45 -5.30 3.60 73.11 0.26 -5.03 16 18 C -0.12 -1.45 5.97 31.97 0.19 -1.26 16 19 C -0.12 -0.80 6.09 31.71 0.19 -0.61 16 20 C -0.41 -1.06 5.84 72.85 0.43 -0.63 16 21 C -0.44 -0.16 4.92 73.12 0.36 0.20 16 22 C 0.12 -0.44 5.97 87.84 0.52 0.09 16 23 S 0.24 -0.44 23.12 -56.49 -1.31 -1.75 16 24 C -0.15 0.65 11.23 66.72 0.75 1.40 16 25 C -0.18 0.15 8.74 21.22 0.19 0.33 16 26 H 0.39 -0.22 8.70 -74.06 -0.64 -0.86 16 27 H 0.10 1.05 7.26 -2.39 -0.02 1.03 16 28 H 0.13 -1.59 7.19 -2.39 -0.02 -1.61 16 29 H 0.07 -0.34 8.14 -2.38 -0.02 -0.36 16 30 H 0.11 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H 0.06 0.25 5.25 -2.39 -0.01 0.23 16 32 H 0.11 -1.00 7.93 -2.38 -0.02 -1.01 16 33 H 0.09 -0.33 7.95 -2.39 -0.02 -0.35 16 34 H 0.08 1.02 6.80 -2.38 -0.02 1.01 16 35 H 0.03 0.48 1.70 -31.92 -0.05 0.42 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.08 0.15 8.03 -2.38 -0.02 0.13 16 41 H 0.09 -0.03 8.03 -2.39 -0.02 -0.05 16 42 H 0.11 -0.52 8.00 -2.39 -0.02 -0.54 16 43 H 0.08 0.50 6.61 -2.39 -0.02 0.48 16 44 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 45 H 0.14 -1.69 7.19 -2.39 -0.02 -1.70 16 46 H 0.22 -2.56 8.06 -2.91 -0.02 -2.58 16 47 H 0.17 -0.98 5.56 -2.91 -0.02 -1.00 16 Total: 0.00 -23.01 363.83 0.31 -22.70 By element: Atomic # 1 Polarization: -5.07 SS G_CDS: 1.03 Total: -4.04 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 4.32 Total: -8.78 kcal Atomic # 7 Polarization: -0.56 SS G_CDS: -0.84 Total: -1.40 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -5.09 Total: -37.82 kcal Atomic # 14 Polarization: 2.49 SS G_CDS: 2.35 Total: 4.84 kcal Atomic # 16 Polarization: 25.96 SS G_CDS: -1.46 Total: 24.51 kcal Total: -23.01 0.31 -22.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607860_13652106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.695 kcal (2) G-P(sol) polarization free energy of solvation -23.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds