Wall clock time and date at job start Mon Mar 8 2021 11:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86296 * 109.47215 * 2 1 4 4 H 1.48503 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47432 * 300.00169 * 3 2 1 6 6 H 1.48493 * 109.47251 * 60.00463 * 3 2 1 7 7 C 1.50697 * 109.47241 * 120.00429 * 2 1 3 8 8 C 1.33388 * 125.20637 * 38.87236 * 7 2 1 9 9 S 1.76202 * 122.53588 * 0.02615 * 8 7 2 10 10 O 1.42104 * 106.40318 * 50.99763 * 9 8 7 11 11 O 1.42105 * 106.40152 * 278.07424 * 9 8 7 12 12 N 1.65606 * 107.21826 * 164.53878 * 9 8 7 13 13 C 1.43957 * 122.79303 * 266.56817 * 12 9 8 14 14 C 1.55550 * 110.01729 * 291.08749 * 13 12 9 15 15 C 1.56829 * 111.25873 * 322.51966 * 14 13 12 16 16 Si 1.83029 * 113.74434 * 319.77670 * 15 14 13 17 17 C 1.87575 * 112.77245 * 208.10336 * 16 15 14 18 18 C 1.56449 * 98.93775 * 100.63427 * 17 16 15 19 19 C 1.53773 * 109.81640 * 39.20375 * 18 17 16 20 20 C 1.55737 * 111.40479 * 312.28439 * 19 18 17 21 21 C 1.88535 * 109.77137 * 84.97313 * 16 15 14 22 22 C 1.46411 * 104.59194 * 294.13932 * 21 16 15 23 23 C 1.38417 * 114.92132 * 179.75429 * 8 7 2 24 24 C 1.33390 * 114.92332 * 0.24845 * 23 8 7 25 25 S 1.75885 * 109.59248 * 359.97438 * 24 23 8 26 26 H 0.96707 * 113.99844 * 305.70097 * 1 2 3 27 27 H 1.09005 * 109.46743 * 240.00310 * 2 1 3 28 28 H 1.09006 * 109.38001 * 51.25169 * 13 12 9 29 29 H 1.08993 * 109.37866 * 171.03133 * 13 12 9 30 30 H 1.08996 * 109.12004 * 82.98580 * 14 13 12 31 31 H 1.09003 * 109.11925 * 202.12361 * 14 13 12 32 32 H 1.09004 * 108.63018 * 80.88274 * 15 14 13 33 33 H 1.08998 * 108.63205 * 198.81108 * 15 14 13 34 34 H 1.08995 * 111.49556 * 218.07165 * 17 16 15 35 35 H 1.08997 * 111.50031 * 343.20066 * 17 16 15 36 36 H 1.09000 * 109.41380 * 279.09311 * 18 17 16 37 37 H 1.09007 * 109.36317 * 159.27195 * 18 17 16 38 38 H 1.08998 * 109.10061 * 191.77303 * 19 18 17 39 39 H 1.08997 * 109.01337 * 72.73607 * 19 18 17 40 40 H 1.08998 * 111.15512 * 270.12146 * 20 19 18 41 41 H 1.09001 * 111.19205 * 145.90399 * 20 19 18 42 42 H 1.08998 * 110.40271 * 175.37375 * 21 16 15 43 43 H 1.08993 * 110.40514 * 52.90285 * 21 16 15 44 44 H 1.08995 * 108.75438 * 178.70671 * 22 21 16 45 45 H 1.09003 * 108.75075 * 296.95399 * 22 21 16 46 46 H 1.08004 * 122.54035 * 180.22281 * 23 8 7 47 47 H 1.07997 * 125.20194 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 3.5350 1.7563 -0.0006 5 1 1.5550 2.4565 -1.2125 6 1 1.5551 2.4564 1.2125 7 6 1.9313 -0.7105 1.2304 8 6 1.3877 -1.8068 1.7611 9 16 -0.0314 -2.5905 1.0706 10 8 0.2465 -2.7793 -0.3102 11 8 -1.1594 -1.8678 1.5446 12 7 -0.1303 -4.1025 1.7388 13 6 0.4429 -5.2682 1.1183 14 6 -0.3413 -5.6214 -0.1778 15 6 -1.8784 -5.3666 0.0003 16 14 -2.5238 -5.8689 1.6377 17 6 -4.3339 -6.3581 1.5858 18 6 -4.1652 -7.9134 1.5743 19 6 -3.0185 -8.3203 2.5146 20 6 -1.7491 -7.4515 2.2721 21 6 -2.2655 -4.4746 2.8802 22 6 -0.8118 -4.3665 3.0163 23 6 2.0263 -2.2856 2.8920 24 6 3.0854 -1.5751 3.2827 25 16 3.3226 -0.2193 2.1878 26 1 -0.3933 0.5156 0.7174 27 1 1.7922 -0.5138 -0.8901 28 1 1.4849 -5.0691 0.8676 29 1 0.3916 -6.1085 1.8105 30 1 0.0299 -5.0072 -0.9982 31 1 -0.1798 -6.6724 -0.4175 32 1 -2.0737 -4.3034 -0.1397 33 1 -2.4150 -5.9224 -0.7686 34 1 -4.8646 -6.0203 2.4759 35 1 -4.8180 -6.0020 0.6765 36 1 -3.9383 -8.2457 0.5613 37 1 -5.0915 -8.3799 1.9096 38 1 -2.7717 -9.3681 2.3434 39 1 -3.3446 -8.1951 3.5471 40 1 -1.1019 -7.9019 1.5195 41 1 -1.2063 -7.2788 3.2014 42 1 -2.7189 -4.7302 3.8379 43 1 -2.6817 -3.5428 2.4976 44 1 -0.5840 -3.5564 3.7091 45 1 -0.4283 -5.2991 3.4301 46 1 1.6920 -3.1674 3.4185 47 1 3.7029 -1.7983 4.1402 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607860_14772022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:35:05 Heat of formation + Delta-G solvation = -100.892661 kcal Electronic energy + Delta-G solvation = -30208.802478 eV Core-core repulsion = 26347.886832 eV Total energy + Delta-G solvation = -3860.915645 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 375.095 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.66245 -39.00514 -37.95948 -37.64958 -36.46628 -36.20259 -33.79213 -31.86144 -30.97108 -29.80725 -27.55711 -26.85711 -24.95591 -24.44072 -23.56916 -22.38321 -21.66407 -21.01362 -19.56699 -18.95341 -18.43498 -17.84122 -17.25735 -17.13337 -16.57846 -16.08054 -15.87873 -15.76201 -15.71934 -15.61372 -15.29460 -15.11612 -14.69589 -14.65316 -14.24954 -14.18249 -14.01781 -13.94282 -13.54774 -13.23871 -12.81559 -12.80415 -12.72876 -12.65732 -12.60259 -12.55443 -12.38690 -12.29715 -12.25382 -12.12214 -12.09449 -11.78848 -11.60377 -11.46998 -11.38255 -11.04102 -10.48411 -10.36054 -10.23781 -10.14141 -10.04586 -9.81235 -0.58818 -0.50569 0.30226 0.58597 0.87595 1.12557 1.25388 1.34551 1.67744 1.73472 1.77312 1.97351 2.06582 2.61852 2.89691 3.14127 3.30723 3.56368 3.76429 3.94304 4.08714 4.10258 4.11299 4.11719 4.13377 4.28511 4.36191 4.38516 4.47032 4.52964 4.60754 4.62958 4.64516 4.69294 4.74166 4.81022 4.82910 5.02628 5.06208 5.07663 5.09329 5.13696 5.18970 5.31893 5.40659 5.44434 5.46722 5.51055 5.56410 5.66126 6.26955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.082 4.082 3 Si 0.912 3.088 4 H -0.226 1.226 5 H -0.219 1.219 6 H -0.233 1.233 7 C -0.101 4.101 8 C -0.665 4.665 9 S 2.725 3.275 10 O -0.935 6.935 11 O -0.942 6.942 12 N -0.998 5.998 13 C 0.107 3.893 14 C -0.132 4.132 15 C -0.412 4.412 16 Si 0.987 3.013 17 C -0.408 4.408 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.403 4.403 21 C -0.434 4.434 22 C 0.129 3.871 23 C -0.084 4.084 24 C -0.207 4.207 25 S 0.141 5.859 26 H 0.388 0.612 27 H 0.150 0.850 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.153 0.847 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.008 -1.444 3.335 4.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.194 4.194 3 Si 0.729 3.271 4 H -0.149 1.149 5 H -0.141 1.141 6 H -0.155 1.155 7 C -0.222 4.222 8 C -0.762 4.762 9 S 2.810 3.190 10 O -0.925 6.925 11 O -0.932 6.932 12 N -0.836 5.836 13 C -0.020 4.020 14 C -0.171 4.171 15 C -0.498 4.498 16 Si 1.181 2.819 17 C -0.495 4.495 18 C -0.160 4.160 19 C -0.155 4.155 20 C -0.490 4.490 21 C -0.520 4.520 22 C 0.005 3.995 23 C -0.112 4.112 24 C -0.343 4.343 25 S 0.405 5.595 26 H 0.237 0.763 27 H 0.167 0.833 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.170 0.830 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.993 0.654 2.146 4.581 hybrid contribution -0.525 -1.449 1.161 1.930 sum 3.468 -0.795 3.308 4.858 Atomic orbital electron populations 1.86581 1.15965 1.75634 1.55511 1.25036 0.85893 1.12002 0.96473 0.86079 0.82292 0.74126 0.84596 1.14926 1.14062 1.15528 1.25000 0.99182 0.97742 1.00238 1.30070 1.26189 1.09788 1.10191 1.01513 0.73209 0.71156 0.73129 1.93564 1.85299 1.84780 1.28861 1.93556 1.47055 1.70741 1.81851 1.57627 1.68206 1.23229 1.34548 1.21609 0.96977 0.87916 0.95455 1.22775 0.93788 1.02383 0.98168 1.26478 1.00114 1.05588 1.17644 0.79867 0.67811 0.67187 0.67062 1.26650 1.18428 0.99807 1.04580 1.22043 0.98598 0.95451 0.99877 1.21832 0.93884 0.99956 0.99826 1.26578 1.01143 1.15116 1.06149 1.25566 0.98755 1.14949 1.12759 1.19773 0.93203 1.02988 0.83529 1.19722 0.95333 1.01187 0.94972 1.25839 1.03518 0.99930 1.04998 1.84475 1.27171 1.28012 1.19822 0.76287 0.83285 0.90859 0.88753 0.89729 0.90776 0.91506 0.90330 0.90046 0.90388 0.91895 0.91705 0.91941 0.91985 0.90163 0.90221 0.88425 0.88473 0.91225 0.89672 0.82972 0.80701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.35 9.69 -60.48 -0.59 -1.94 16 2 C -0.08 -0.10 2.36 36.00 0.09 -0.01 16 3 Si 0.91 -0.40 26.38 -169.99 -4.48 -4.88 16 4 H -0.23 0.19 7.11 56.52 0.40 0.59 16 5 H -0.22 0.00 7.11 56.52 0.40 0.40 16 6 H -0.23 0.10 7.11 56.52 0.40 0.50 16 7 C -0.10 -0.18 5.77 -36.00 -0.21 -0.39 16 8 C -0.67 -1.38 5.72 -41.21 -0.24 -1.62 16 9 S 2.72 8.73 3.85 -107.50 -0.41 8.32 16 10 O -0.93 -5.08 14.60 -62.85 -0.92 -6.00 16 11 O -0.94 -4.80 15.32 -64.75 -0.99 -5.79 16 12 N -1.00 -0.02 1.53 -117.69 -0.18 -0.20 16 13 C 0.11 -0.14 5.36 -4.04 -0.02 -0.16 16 14 C -0.13 -0.03 5.53 -23.30 -0.13 -0.15 16 15 C -0.41 -0.29 4.44 39.23 0.17 -0.12 16 16 Si 0.99 -1.22 9.04 -169.99 -1.54 -2.76 16 17 C -0.41 0.07 5.94 39.01 0.23 0.30 16 18 C -0.12 0.03 5.97 -24.47 -0.15 -0.12 16 19 C -0.12 0.10 6.10 -24.87 -0.15 -0.05 16 20 C -0.40 0.77 4.73 38.62 0.18 0.96 16 21 C -0.43 0.35 5.14 34.02 0.17 0.53 16 22 C 0.13 -0.20 4.53 -6.81 -0.03 -0.23 16 23 C -0.08 0.00 9.74 -41.21 -0.40 -0.41 16 24 C -0.21 0.12 11.23 29.04 0.33 0.45 16 25 S 0.14 0.04 20.87 -107.50 -2.24 -2.21 16 26 H 0.39 -0.16 8.50 45.56 0.39 0.22 16 27 H 0.15 0.06 7.96 -51.93 -0.41 -0.35 16 28 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 29 H 0.09 -0.36 5.61 -51.93 -0.29 -0.65 16 30 H 0.08 0.18 6.93 -51.93 -0.36 -0.18 16 31 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 32 H 0.07 0.16 7.57 -51.93 -0.39 -0.23 16 33 H 0.08 0.01 7.90 -51.93 -0.41 -0.40 16 34 H 0.08 -0.03 8.04 -51.93 -0.42 -0.45 16 35 H 0.08 0.01 8.04 -51.93 -0.42 -0.41 16 36 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 37 H 0.06 0.00 8.14 -51.93 -0.42 -0.43 16 38 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 39 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 40 H 0.08 -0.18 8.01 -51.93 -0.42 -0.59 16 41 H 0.08 -0.24 7.18 -51.93 -0.37 -0.61 16 42 H 0.10 -0.23 8.02 -51.93 -0.42 -0.64 16 43 H 0.10 0.11 6.95 -51.93 -0.36 -0.25 16 44 H 0.07 -0.15 7.90 -51.93 -0.41 -0.56 16 45 H 0.09 -0.36 5.99 -51.93 -0.31 -0.68 16 46 H 0.15 -0.39 7.16 -52.48 -0.38 -0.76 16 47 H 0.18 -0.56 8.06 -52.49 -0.42 -0.98 16 LS Contribution 373.83 15.07 5.63 5.63 Total: 0.00 -7.24 373.83 -12.60 -19.85 By element: Atomic # 1 Polarization: -2.25 SS G_CDS: -6.73 Total: -8.99 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -0.15 Total: -1.04 kcal Atomic # 7 Polarization: -0.02 SS G_CDS: -0.18 Total: -0.20 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -2.50 Total: -13.73 kcal Atomic # 14 Polarization: -1.62 SS G_CDS: -6.02 Total: -7.64 kcal Atomic # 16 Polarization: 8.77 SS G_CDS: -2.66 Total: 6.11 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -7.24 -12.60 -19.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607860_14772022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.045 kcal (2) G-P(sol) polarization free energy of solvation -7.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds